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.venv_haddock/lib/python3.12/site-packages/pandas/compat/numpy/__init__.py

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+""" support numpy compatibility across versions """
+import warnings
+
+import numpy as np
+
+from pandas.util.version import Version
+
+# numpy versioning
+_np_version = np.__version__
+_nlv = Version(_np_version)
+np_version_lt1p23 = _nlv < Version("1.23")
+np_version_gte1p24 = _nlv >= Version("1.24")
+np_version_gte1p24p3 = _nlv >= Version("1.24.3")
+np_version_gte1p25 = _nlv >= Version("1.25")
+np_version_gt2 = _nlv >= Version("2.0.0")
+is_numpy_dev = _nlv.dev is not None
+_min_numpy_ver = "1.22.4"
+
+
+if _nlv < Version(_min_numpy_ver):
+    raise ImportError(
+        f"this version of pandas is incompatible with numpy < {_min_numpy_ver}\n"
+        f"your numpy version is {_np_version}.\n"
+        f"Please upgrade numpy to >= {_min_numpy_ver} to use this pandas version"
+    )
+
+
+np_long: type
+np_ulong: type
+
+if np_version_gt2:
+    try:
+        with warnings.catch_warnings():
+            warnings.filterwarnings(
+                "ignore",
+                r".*In the future `np\.long` will be defined as.*",
+                FutureWarning,
+            )
+            np_long = np.long  # type: ignore[attr-defined]
+            np_ulong = np.ulong  # type: ignore[attr-defined]
+    except AttributeError:
+        np_long = np.int_
+        np_ulong = np.uint
+else:
+    np_long = np.int_
+    np_ulong = np.uint
+
+
+__all__ = [
+    "np",
+    "_np_version",
+    "is_numpy_dev",
+]

.venv_haddock/lib/python3.12/site-packages/pandas/compat/numpy/function.py

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+"""
+For compatibility with numpy libraries, pandas functions or methods have to
+accept '*args' and '**kwargs' parameters to accommodate numpy arguments that
+are not actually used or respected in the pandas implementation.
+
+To ensure that users do not abuse these parameters, validation is performed in
+'validators.py' to make sure that any extra parameters passed correspond ONLY
+to those in the numpy signature. Part of that validation includes whether or
+not the user attempted to pass in non-default values for these extraneous
+parameters. As we want to discourage users from relying on these parameters
+when calling the pandas implementation, we want them only to pass in the
+default values for these parameters.
+
+This module provides a set of commonly used default arguments for functions and
+methods that are spread throughout the codebase. This module will make it
+easier to adjust to future upstream changes in the analogous numpy signatures.
+"""
+from __future__ import annotations
+
+from typing import (
+    TYPE_CHECKING,
+    Any,
+    TypeVar,
+    cast,
+    overload,
+)
+
+import numpy as np
+from numpy import ndarray
+
+from pandas._libs.lib import (
+    is_bool,
+    is_integer,
+)
+from pandas.errors import UnsupportedFunctionCall
+from pandas.util._validators import (
+    validate_args,
+    validate_args_and_kwargs,
+    validate_kwargs,
+)
+
+if TYPE_CHECKING:
+    from pandas._typing import (
+        Axis,
+        AxisInt,
+    )
+
+    AxisNoneT = TypeVar("AxisNoneT", Axis, None)
+
+
+class CompatValidator:
+    def __init__(
+        self,
+        defaults,
+        fname=None,
+        method: str | None = None,
+        max_fname_arg_count=None,
+    ) -> None:
+        self.fname = fname
+        self.method = method
+        self.defaults = defaults
+        self.max_fname_arg_count = max_fname_arg_count
+
+    def __call__(
+        self,
+        args,
+        kwargs,
+        fname=None,
+        max_fname_arg_count=None,
+        method: str | None = None,
+    ) -> None:
+        if not args and not kwargs:
+            return None
+
+        fname = self.fname if fname is None else fname
+        max_fname_arg_count = (
+            self.max_fname_arg_count
+            if max_fname_arg_count is None
+            else max_fname_arg_count
+        )
+        method = self.method if method is None else method
+
+        if method == "args":
+            validate_args(fname, args, max_fname_arg_count, self.defaults)
+        elif method == "kwargs":
+            validate_kwargs(fname, kwargs, self.defaults)
+        elif method == "both":
+            validate_args_and_kwargs(
+                fname, args, kwargs, max_fname_arg_count, self.defaults
+            )
+        else:
+            raise ValueError(f"invalid validation method '{method}'")
+
+
+ARGMINMAX_DEFAULTS = {"out": None}
+validate_argmin = CompatValidator(
+    ARGMINMAX_DEFAULTS, fname="argmin", method="both", max_fname_arg_count=1
+)
+validate_argmax = CompatValidator(
+    ARGMINMAX_DEFAULTS, fname="argmax", method="both", max_fname_arg_count=1
+)
+
+
+def process_skipna(skipna: bool | ndarray | None, args) -> tuple[bool, Any]:
+    if isinstance(skipna, ndarray) or skipna is None:
+        args = (skipna,) + args
+        skipna = True
+
+    return skipna, args
+
+
+def validate_argmin_with_skipna(skipna: bool | ndarray | None, args, kwargs) -> bool:
+    """
+    If 'Series.argmin' is called via the 'numpy' library, the third parameter
+    in its signature is 'out', which takes either an ndarray or 'None', so
+    check if the 'skipna' parameter is either an instance of ndarray or is
+    None, since 'skipna' itself should be a boolean
+    """
+    skipna, args = process_skipna(skipna, args)
+    validate_argmin(args, kwargs)
+    return skipna
+
+
+def validate_argmax_with_skipna(skipna: bool | ndarray | None, args, kwargs) -> bool:
+    """
+    If 'Series.argmax' is called via the 'numpy' library, the third parameter
+    in its signature is 'out', which takes either an ndarray or 'None', so
+    check if the 'skipna' parameter is either an instance of ndarray or is
+    None, since 'skipna' itself should be a boolean
+    """
+    skipna, args = process_skipna(skipna, args)
+    validate_argmax(args, kwargs)
+    return skipna
+
+
+ARGSORT_DEFAULTS: dict[str, int | str | None] = {}
+ARGSORT_DEFAULTS["axis"] = -1
+ARGSORT_DEFAULTS["kind"] = "quicksort"
+ARGSORT_DEFAULTS["order"] = None
+ARGSORT_DEFAULTS["kind"] = None
+ARGSORT_DEFAULTS["stable"] = None
+
+
+validate_argsort = CompatValidator(
+    ARGSORT_DEFAULTS, fname="argsort", max_fname_arg_count=0, method="both"
+)
+
+# two different signatures of argsort, this second validation for when the
+# `kind` param is supported
+ARGSORT_DEFAULTS_KIND: dict[str, int | None] = {}
+ARGSORT_DEFAULTS_KIND["axis"] = -1
+ARGSORT_DEFAULTS_KIND["order"] = None
+ARGSORT_DEFAULTS_KIND["stable"] = None
+validate_argsort_kind = CompatValidator(
+    ARGSORT_DEFAULTS_KIND, fname="argsort", max_fname_arg_count=0, method="both"
+)
+
+
+def validate_argsort_with_ascending(ascending: bool | int | None, args, kwargs) -> bool:
+    """
+    If 'Categorical.argsort' is called via the 'numpy' library, the first
+    parameter in its signature is 'axis', which takes either an integer or
+    'None', so check if the 'ascending' parameter has either integer type or is
+    None, since 'ascending' itself should be a boolean
+    """
+    if is_integer(ascending) or ascending is None:
+        args = (ascending,) + args
+        ascending = True
+
+    validate_argsort_kind(args, kwargs, max_fname_arg_count=3)
+    ascending = cast(bool, ascending)
+    return ascending
+
+
+CLIP_DEFAULTS: dict[str, Any] = {"out": None}
+validate_clip = CompatValidator(
+    CLIP_DEFAULTS, fname="clip", method="both", max_fname_arg_count=3
+)
+
+
+@overload
+def validate_clip_with_axis(axis: ndarray, args, kwargs) -> None:
+    ...
+
+
+@overload
+def validate_clip_with_axis(axis: AxisNoneT, args, kwargs) -> AxisNoneT:
+    ...
+
+
+def validate_clip_with_axis(
+    axis: ndarray | AxisNoneT, args, kwargs
+) -> AxisNoneT | None:
+    """
+    If 'NDFrame.clip' is called via the numpy library, the third parameter in
+    its signature is 'out', which can takes an ndarray, so check if the 'axis'
+    parameter is an instance of ndarray, since 'axis' itself should either be
+    an integer or None
+    """
+    if isinstance(axis, ndarray):
+        args = (axis,) + args
+        # error: Incompatible types in assignment (expression has type "None",
+        # variable has type "Union[ndarray[Any, Any], str, int]")
+        axis = None  # type: ignore[assignment]
+
+    validate_clip(args, kwargs)
+    # error: Incompatible return value type (got "Union[ndarray[Any, Any],
+    # str, int]", expected "Union[str, int, None]")
+    return axis  # type: ignore[return-value]
+
+
+CUM_FUNC_DEFAULTS: dict[str, Any] = {}
+CUM_FUNC_DEFAULTS["dtype"] = None
+CUM_FUNC_DEFAULTS["out"] = None
+validate_cum_func = CompatValidator(
+    CUM_FUNC_DEFAULTS, method="both", max_fname_arg_count=1
+)
+validate_cumsum = CompatValidator(
+    CUM_FUNC_DEFAULTS, fname="cumsum", method="both", max_fname_arg_count=1
+)
+
+
+def validate_cum_func_with_skipna(skipna: bool, args, kwargs, name) -> bool:
+    """
+    If this function is called via the 'numpy' library, the third parameter in
+    its signature is 'dtype', which takes either a 'numpy' dtype or 'None', so
+    check if the 'skipna' parameter is a boolean or not
+    """
+    if not is_bool(skipna):
+        args = (skipna,) + args
+        skipna = True
+    elif isinstance(skipna, np.bool_):
+        skipna = bool(skipna)
+
+    validate_cum_func(args, kwargs, fname=name)
+    return skipna
+
+
+ALLANY_DEFAULTS: dict[str, bool | None] = {}
+ALLANY_DEFAULTS["dtype"] = None
+ALLANY_DEFAULTS["out"] = None
+ALLANY_DEFAULTS["keepdims"] = False
+ALLANY_DEFAULTS["axis"] = None
+validate_all = CompatValidator(
+    ALLANY_DEFAULTS, fname="all", method="both", max_fname_arg_count=1
+)
+validate_any = CompatValidator(
+    ALLANY_DEFAULTS, fname="any", method="both", max_fname_arg_count=1
+)
+
+LOGICAL_FUNC_DEFAULTS = {"out": None, "keepdims": False}
+validate_logical_func = CompatValidator(LOGICAL_FUNC_DEFAULTS, method="kwargs")
+
+MINMAX_DEFAULTS = {"axis": None, "dtype": None, "out": None, "keepdims": False}
+validate_min = CompatValidator(
+    MINMAX_DEFAULTS, fname="min", method="both", max_fname_arg_count=1
+)
+validate_max = CompatValidator(
+    MINMAX_DEFAULTS, fname="max", method="both", max_fname_arg_count=1
+)
+
+RESHAPE_DEFAULTS: dict[str, str] = {"order": "C"}
+validate_reshape = CompatValidator(
+    RESHAPE_DEFAULTS, fname="reshape", method="both", max_fname_arg_count=1
+)
+
+REPEAT_DEFAULTS: dict[str, Any] = {"axis": None}
+validate_repeat = CompatValidator(
+    REPEAT_DEFAULTS, fname="repeat", method="both", max_fname_arg_count=1
+)
+
+ROUND_DEFAULTS: dict[str, Any] = {"out": None}
+validate_round = CompatValidator(
+    ROUND_DEFAULTS, fname="round", method="both", max_fname_arg_count=1
+)
+
+SORT_DEFAULTS: dict[str, int | str | None] = {}
+SORT_DEFAULTS["axis"] = -1
+SORT_DEFAULTS["kind"] = "quicksort"
+SORT_DEFAULTS["order"] = None
+validate_sort = CompatValidator(SORT_DEFAULTS, fname="sort", method="kwargs")
+
+STAT_FUNC_DEFAULTS: dict[str, Any | None] = {}
+STAT_FUNC_DEFAULTS["dtype"] = None
+STAT_FUNC_DEFAULTS["out"] = None
+
+SUM_DEFAULTS = STAT_FUNC_DEFAULTS.copy()
+SUM_DEFAULTS["axis"] = None
+SUM_DEFAULTS["keepdims"] = False
+SUM_DEFAULTS["initial"] = None
+
+PROD_DEFAULTS = SUM_DEFAULTS.copy()
+
+MEAN_DEFAULTS = SUM_DEFAULTS.copy()
+
+MEDIAN_DEFAULTS = STAT_FUNC_DEFAULTS.copy()
+MEDIAN_DEFAULTS["overwrite_input"] = False
+MEDIAN_DEFAULTS["keepdims"] = False
+
+STAT_FUNC_DEFAULTS["keepdims"] = False
+
+validate_stat_func = CompatValidator(STAT_FUNC_DEFAULTS, method="kwargs")
+validate_sum = CompatValidator(
+    SUM_DEFAULTS, fname="sum", method="both", max_fname_arg_count=1
+)
+validate_prod = CompatValidator(
+    PROD_DEFAULTS, fname="prod", method="both", max_fname_arg_count=1
+)
+validate_mean = CompatValidator(
+    MEAN_DEFAULTS, fname="mean", method="both", max_fname_arg_count=1
+)
+validate_median = CompatValidator(
+    MEDIAN_DEFAULTS, fname="median", method="both", max_fname_arg_count=1
+)
+
+STAT_DDOF_FUNC_DEFAULTS: dict[str, bool | None] = {}
+STAT_DDOF_FUNC_DEFAULTS["dtype"] = None
+STAT_DDOF_FUNC_DEFAULTS["out"] = None
+STAT_DDOF_FUNC_DEFAULTS["keepdims"] = False
+validate_stat_ddof_func = CompatValidator(STAT_DDOF_FUNC_DEFAULTS, method="kwargs")
+
+TAKE_DEFAULTS: dict[str, str | None] = {}
+TAKE_DEFAULTS["out"] = None
+TAKE_DEFAULTS["mode"] = "raise"
+validate_take = CompatValidator(TAKE_DEFAULTS, fname="take", method="kwargs")
+
+
+def validate_take_with_convert(convert: ndarray | bool | None, args, kwargs) -> bool:
+    """
+    If this function is called via the 'numpy' library, the third parameter in
+    its signature is 'axis', which takes either an ndarray or 'None', so check
+    if the 'convert' parameter is either an instance of ndarray or is None
+    """
+    if isinstance(convert, ndarray) or convert is None:
+        args = (convert,) + args
+        convert = True
+
+    validate_take(args, kwargs, max_fname_arg_count=3, method="both")
+    return convert
+
+
+TRANSPOSE_DEFAULTS = {"axes": None}
+validate_transpose = CompatValidator(
+    TRANSPOSE_DEFAULTS, fname="transpose", method="both", max_fname_arg_count=0
+)
+
+
+def validate_groupby_func(name: str, args, kwargs, allowed=None) -> None:
+    """
+    'args' and 'kwargs' should be empty, except for allowed kwargs because all
+    of their necessary parameters are explicitly listed in the function
+    signature
+    """
+    if allowed is None:
+        allowed = []
+
+    kwargs = set(kwargs) - set(allowed)
+
+    if len(args) + len(kwargs) > 0:
+        raise UnsupportedFunctionCall(
+            "numpy operations are not valid with groupby. "
+            f"Use .groupby(...).{name}() instead"
+        )
+
+
+RESAMPLER_NUMPY_OPS = ("min", "max", "sum", "prod", "mean", "std", "var")
+
+
+def validate_resampler_func(method: str, args, kwargs) -> None:
+    """
+    'args' and 'kwargs' should be empty because all of their necessary
+    parameters are explicitly listed in the function signature
+    """
+    if len(args) + len(kwargs) > 0:
+        if method in RESAMPLER_NUMPY_OPS:
+            raise UnsupportedFunctionCall(
+                "numpy operations are not valid with resample. "
+                f"Use .resample(...).{method}() instead"
+            )
+        raise TypeError("too many arguments passed in")
+
+
+def validate_minmax_axis(axis: AxisInt | None, ndim: int = 1) -> None:
+    """
+    Ensure that the axis argument passed to min, max, argmin, or argmax is zero
+    or None, as otherwise it will be incorrectly ignored.
+
+    Parameters
+    ----------
+    axis : int or None
+    ndim : int, default 1
+
+    Raises
+    ------
+    ValueError
+    """
+    if axis is None:
+        return
+    if axis >= ndim or (axis < 0 and ndim + axis < 0):
+        raise ValueError(f"`axis` must be fewer than the number of dimensions ({ndim})")
+
+
+_validation_funcs = {
+    "median": validate_median,
+    "mean": validate_mean,
+    "min": validate_min,
+    "max": validate_max,
+    "sum": validate_sum,
+    "prod": validate_prod,
+}
+
+
+def validate_func(fname, args, kwargs) -> None:
+    if fname not in _validation_funcs:
+        return validate_stat_func(args, kwargs, fname=fname)
+
+    validation_func = _validation_funcs[fname]
+    return validation_func(args, kwargs)

.venv_haddock/lib/python3.12/site-packages/pandas/core/_numba/executor.py

@@ -0,0 +1,239 @@
+from __future__ import annotations
+
+import functools
+from typing import (
+    TYPE_CHECKING,
+    Any,
+    Callable,
+)
+
+if TYPE_CHECKING:
+    from pandas._typing import Scalar
+
+import numpy as np
+
+from pandas.compat._optional import import_optional_dependency
+
+
+@functools.cache
+def generate_apply_looper(func, nopython=True, nogil=True, parallel=False):
+    if TYPE_CHECKING:
+        import numba
+    else:
+        numba = import_optional_dependency("numba")
+    nb_compat_func = numba.extending.register_jitable(func)
+
+    @numba.jit(nopython=nopython, nogil=nogil, parallel=parallel)
+    def nb_looper(values, axis):
+        # Operate on the first row/col in order to get
+        # the output shape
+        if axis == 0:
+            first_elem = values[:, 0]
+            dim0 = values.shape[1]
+        else:
+            first_elem = values[0]
+            dim0 = values.shape[0]
+        res0 = nb_compat_func(first_elem)
+        # Use np.asarray to get shape for
+        # https://github.com/numba/numba/issues/4202#issuecomment-1185981507
+        buf_shape = (dim0,) + np.atleast_1d(np.asarray(res0)).shape
+        if axis == 0:
+            buf_shape = buf_shape[::-1]
+        buff = np.empty(buf_shape)
+
+        if axis == 1:
+            buff[0] = res0
+            for i in numba.prange(1, values.shape[0]):
+                buff[i] = nb_compat_func(values[i])
+        else:
+            buff[:, 0] = res0
+            for j in numba.prange(1, values.shape[1]):
+                buff[:, j] = nb_compat_func(values[:, j])
+        return buff
+
+    return nb_looper
+
+
+@functools.cache
+def make_looper(func, result_dtype, is_grouped_kernel, nopython, nogil, parallel):
+    if TYPE_CHECKING:
+        import numba
+    else:
+        numba = import_optional_dependency("numba")
+
+    if is_grouped_kernel:
+
+        @numba.jit(nopython=nopython, nogil=nogil, parallel=parallel)
+        def column_looper(
+            values: np.ndarray,
+            labels: np.ndarray,
+            ngroups: int,
+            min_periods: int,
+            *args,
+        ):
+            result = np.empty((values.shape[0], ngroups), dtype=result_dtype)
+            na_positions = {}
+            for i in numba.prange(values.shape[0]):
+                output, na_pos = func(
+                    values[i], result_dtype, labels, ngroups, min_periods, *args
+                )
+                result[i] = output
+                if len(na_pos) > 0:
+                    na_positions[i] = np.array(na_pos)
+            return result, na_positions
+
+    else:
+
+        @numba.jit(nopython=nopython, nogil=nogil, parallel=parallel)
+        def column_looper(
+            values: np.ndarray,
+            start: np.ndarray,
+            end: np.ndarray,
+            min_periods: int,
+            *args,
+        ):
+            result = np.empty((values.shape[0], len(start)), dtype=result_dtype)
+            na_positions = {}
+            for i in numba.prange(values.shape[0]):
+                output, na_pos = func(
+                    values[i], result_dtype, start, end, min_periods, *args
+                )
+                result[i] = output
+                if len(na_pos) > 0:
+                    na_positions[i] = np.array(na_pos)
+            return result, na_positions
+
+    return column_looper
+
+
+default_dtype_mapping: dict[np.dtype, Any] = {
+    np.dtype("int8"): np.int64,
+    np.dtype("int16"): np.int64,
+    np.dtype("int32"): np.int64,
+    np.dtype("int64"): np.int64,
+    np.dtype("uint8"): np.uint64,
+    np.dtype("uint16"): np.uint64,
+    np.dtype("uint32"): np.uint64,
+    np.dtype("uint64"): np.uint64,
+    np.dtype("float32"): np.float64,
+    np.dtype("float64"): np.float64,
+    np.dtype("complex64"): np.complex128,
+    np.dtype("complex128"): np.complex128,
+}
+
+
+# TODO: Preserve complex dtypes
+
+float_dtype_mapping: dict[np.dtype, Any] = {
+    np.dtype("int8"): np.float64,
+    np.dtype("int16"): np.float64,
+    np.dtype("int32"): np.float64,
+    np.dtype("int64"): np.float64,
+    np.dtype("uint8"): np.float64,
+    np.dtype("uint16"): np.float64,
+    np.dtype("uint32"): np.float64,
+    np.dtype("uint64"): np.float64,
+    np.dtype("float32"): np.float64,
+    np.dtype("float64"): np.float64,
+    np.dtype("complex64"): np.float64,
+    np.dtype("complex128"): np.float64,
+}
+
+identity_dtype_mapping: dict[np.dtype, Any] = {
+    np.dtype("int8"): np.int8,
+    np.dtype("int16"): np.int16,
+    np.dtype("int32"): np.int32,
+    np.dtype("int64"): np.int64,
+    np.dtype("uint8"): np.uint8,
+    np.dtype("uint16"): np.uint16,
+    np.dtype("uint32"): np.uint32,
+    np.dtype("uint64"): np.uint64,
+    np.dtype("float32"): np.float32,
+    np.dtype("float64"): np.float64,
+    np.dtype("complex64"): np.complex64,
+    np.dtype("complex128"): np.complex128,
+}
+
+
+def generate_shared_aggregator(
+    func: Callable[..., Scalar],
+    dtype_mapping: dict[np.dtype, np.dtype],
+    is_grouped_kernel: bool,
+    nopython: bool,
+    nogil: bool,
+    parallel: bool,
+):
+    """
+    Generate a Numba function that loops over the columns 2D object and applies
+    a 1D numba kernel over each column.
+
+    Parameters
+    ----------
+    func : function
+        aggregation function to be applied to each column
+    dtype_mapping: dict or None
+        If not None, maps a dtype to a result dtype.
+        Otherwise, will fall back to default mapping.
+    is_grouped_kernel: bool, default False
+        Whether func operates using the group labels (True)
+        or using starts/ends arrays
+
+        If true, you also need to pass the number of groups to this function
+    nopython : bool
+        nopython to be passed into numba.jit
+    nogil : bool
+        nogil to be passed into numba.jit
+    parallel : bool
+        parallel to be passed into numba.jit
+
+    Returns
+    -------
+    Numba function
+    """
+
+    # A wrapper around the looper function,
+    # to dispatch based on dtype since numba is unable to do that in nopython mode
+
+    # It also post-processes the values by inserting nans where number of observations
+    # is less than min_periods
+    # Cannot do this in numba nopython mode
+    # (you'll run into type-unification error when you cast int -> float)
+    def looper_wrapper(
+        values,
+        start=None,
+        end=None,
+        labels=None,
+        ngroups=None,
+        min_periods: int = 0,
+        **kwargs,
+    ):
+        result_dtype = dtype_mapping[values.dtype]
+        column_looper = make_looper(
+            func, result_dtype, is_grouped_kernel, nopython, nogil, parallel
+        )
+        # Need to unpack kwargs since numba only supports *args
+        if is_grouped_kernel:
+            result, na_positions = column_looper(
+                values, labels, ngroups, min_periods, *kwargs.values()
+            )
+        else:
+            result, na_positions = column_looper(
+                values, start, end, min_periods, *kwargs.values()
+            )
+        if result.dtype.kind == "i":
+            # Look if na_positions is not empty
+            # If so, convert the whole block
+            # This is OK since int dtype cannot hold nan,
+            # so if min_periods not satisfied for 1 col, it is not satisfied for
+            # all columns at that index
+            for na_pos in na_positions.values():
+                if len(na_pos) > 0:
+                    result = result.astype("float64")
+                    break
+        # TODO: Optimize this
+        for i, na_pos in na_positions.items():
+            if len(na_pos) > 0:
+                result[i, na_pos] = np.nan
+        return result
+
+    return looper_wrapper

.venv_haddock/lib/python3.12/site-packages/pandas/core/_numba/extensions.py

@@ -0,0 +1,585 @@
+# Disable type checking for this module since numba's internals
+# are not typed, and we use numba's internals via its extension API
+# mypy: ignore-errors
+"""
+Utility classes/functions to let numba recognize
+pandas Index/Series/DataFrame
+
+Mostly vendored from https://github.com/numba/numba/blob/main/numba/tests/pdlike_usecase.py
+"""
+
+from __future__ import annotations
+
+from contextlib import contextmanager
+import operator
+
+import numba
+from numba import types
+from numba.core import cgutils
+from numba.core.datamodel import models
+from numba.core.extending import (
+    NativeValue,
+    box,
+    lower_builtin,
+    make_attribute_wrapper,
+    overload,
+    overload_attribute,
+    overload_method,
+    register_model,
+    type_callable,
+    typeof_impl,
+    unbox,
+)
+from numba.core.imputils import impl_ret_borrowed
+import numpy as np
+
+from pandas._libs import lib
+
+from pandas.core.indexes.base import Index
+from pandas.core.indexing import _iLocIndexer
+from pandas.core.internals import SingleBlockManager
+from pandas.core.series import Series
+
+
+# Helper function to hack around fact that Index casts numpy string dtype to object
+#
+# Idea is to set an attribute on a Index called _numba_data
+# that is the original data, or the object data casted to numpy string dtype,
+# with a context manager that is unset afterwards
+@contextmanager
+def set_numba_data(index: Index):
+    numba_data = index._data
+    if numba_data.dtype in (object, "string"):
+        numba_data = np.asarray(numba_data)
+        if not lib.is_string_array(numba_data):
+            raise ValueError(
+                "The numba engine only supports using string or numeric column names"
+            )
+        numba_data = numba_data.astype("U")
+    try:
+        index._numba_data = numba_data
+        yield index
+    finally:
+        del index._numba_data
+
+
+# TODO: Range index support
+# (this currently lowers OK, but does not round-trip)
+class IndexType(types.Type):
+    """
+    The type class for Index objects.
+    """
+
+    def __init__(self, dtype, layout, pyclass: any) -> None:
+        self.pyclass = pyclass
+        name = f"index({dtype}, {layout})"
+        self.dtype = dtype
+        self.layout = layout
+        super().__init__(name)
+
+    @property
+    def key(self):
+        return self.pyclass, self.dtype, self.layout
+
+    @property
+    def as_array(self):
+        return types.Array(self.dtype, 1, self.layout)
+
+    def copy(self, dtype=None, ndim: int = 1, layout=None):
+        assert ndim == 1
+        if dtype is None:
+            dtype = self.dtype
+        layout = layout or self.layout
+        return type(self)(dtype, layout, self.pyclass)
+
+
+class SeriesType(types.Type):
+    """
+    The type class for Series objects.
+    """
+
+    def __init__(self, dtype, index, namety) -> None:
+        assert isinstance(index, IndexType)
+        self.dtype = dtype
+        self.index = index
+        self.values = types.Array(self.dtype, 1, "C")
+        self.namety = namety
+        name = f"series({dtype}, {index}, {namety})"
+        super().__init__(name)
+
+    @property
+    def key(self):
+        return self.dtype, self.index, self.namety
+
+    @property
+    def as_array(self):
+        return self.values
+
+    def copy(self, dtype=None, ndim: int = 1, layout: str = "C"):
+        assert ndim == 1
+        assert layout == "C"
+        if dtype is None:
+            dtype = self.dtype
+        return type(self)(dtype, self.index, self.namety)
+
+
+@typeof_impl.register(Index)
+def typeof_index(val, c):
+    """
+    This will assume that only strings are in object dtype
+    index.
+    (you should check this before this gets lowered down to numba)
+    """
+    # arrty = typeof_impl(val._data, c)
+    arrty = typeof_impl(val._numba_data, c)
+    assert arrty.ndim == 1
+    return IndexType(arrty.dtype, arrty.layout, type(val))
+
+
+@typeof_impl.register(Series)
+def typeof_series(val, c):
+    index = typeof_impl(val.index, c)
+    arrty = typeof_impl(val.values, c)
+    namety = typeof_impl(val.name, c)
+    assert arrty.ndim == 1
+    assert arrty.layout == "C"
+    return SeriesType(arrty.dtype, index, namety)
+
+
+@type_callable(Series)
+def type_series_constructor(context):
+    def typer(data, index, name=None):
+        if isinstance(index, IndexType) and isinstance(data, types.Array):
+            assert data.ndim == 1
+            if name is None:
+                name = types.intp
+            return SeriesType(data.dtype, index, name)
+
+    return typer
+
+
+@type_callable(Index)
+def type_index_constructor(context):
+    def typer(data, hashmap=None):
+        if isinstance(data, types.Array):
+            assert data.layout == "C"
+            assert data.ndim == 1
+            assert hashmap is None or isinstance(hashmap, types.DictType)
+            return IndexType(data.dtype, layout=data.layout, pyclass=Index)
+
+    return typer
+
+
+# Backend extensions for Index and Series and Frame
+@register_model(IndexType)
+class IndexModel(models.StructModel):
+    def __init__(self, dmm, fe_type) -> None:
+        # We don't want the numpy string scalar type in our hashmap
+        members = [
+            ("data", fe_type.as_array),
+            # This is an attempt to emulate our hashtable code with a numba
+            # typed dict
+            # It maps from values in the index to their integer positions in the array
+            ("hashmap", types.DictType(fe_type.dtype, types.intp)),
+            # Pointer to the Index object this was created from, or that it
+            # boxes to
+            # https://numba.discourse.group/t/qst-how-to-cache-the-boxing-of-an-object/2128/2?u=lithomas1
+            ("parent", types.pyobject),
+        ]
+        models.StructModel.__init__(self, dmm, fe_type, members)
+
+
+@register_model(SeriesType)
+class SeriesModel(models.StructModel):
+    def __init__(self, dmm, fe_type) -> None:
+        members = [
+            ("index", fe_type.index),
+            ("values", fe_type.as_array),
+            ("name", fe_type.namety),
+        ]
+        models.StructModel.__init__(self, dmm, fe_type, members)
+
+
+make_attribute_wrapper(IndexType, "data", "_data")
+make_attribute_wrapper(IndexType, "hashmap", "hashmap")
+
+make_attribute_wrapper(SeriesType, "index", "index")
+make_attribute_wrapper(SeriesType, "values", "values")
+make_attribute_wrapper(SeriesType, "name", "name")
+
+
+@lower_builtin(Series, types.Array, IndexType)
+def pdseries_constructor(context, builder, sig, args):
+    data, index = args
+    series = cgutils.create_struct_proxy(sig.return_type)(context, builder)
+    series.index = index
+    series.values = data
+    series.name = context.get_constant(types.intp, 0)
+    return impl_ret_borrowed(context, builder, sig.return_type, series._getvalue())
+
+
+@lower_builtin(Series, types.Array, IndexType, types.intp)
+@lower_builtin(Series, types.Array, IndexType, types.float64)
+@lower_builtin(Series, types.Array, IndexType, types.unicode_type)
+def pdseries_constructor_with_name(context, builder, sig, args):
+    data, index, name = args
+    series = cgutils.create_struct_proxy(sig.return_type)(context, builder)
+    series.index = index
+    series.values = data
+    series.name = name
+    return impl_ret_borrowed(context, builder, sig.return_type, series._getvalue())
+
+
+@lower_builtin(Index, types.Array, types.DictType, types.pyobject)
+def index_constructor_2arg(context, builder, sig, args):
+    (data, hashmap, parent) = args
+    index = cgutils.create_struct_proxy(sig.return_type)(context, builder)
+
+    index.data = data
+    index.hashmap = hashmap
+    index.parent = parent
+    return impl_ret_borrowed(context, builder, sig.return_type, index._getvalue())
+
+
+@lower_builtin(Index, types.Array, types.DictType)
+def index_constructor_2arg_parent(context, builder, sig, args):
+    # Basically same as index_constructor_1arg, but also lets you specify the
+    # parent object
+    (data, hashmap) = args
+    index = cgutils.create_struct_proxy(sig.return_type)(context, builder)
+
+    index.data = data
+    index.hashmap = hashmap
+    return impl_ret_borrowed(context, builder, sig.return_type, index._getvalue())
+
+
+@lower_builtin(Index, types.Array)
+def index_constructor_1arg(context, builder, sig, args):
+    from numba.typed import Dict
+
+    key_type = sig.return_type.dtype
+    value_type = types.intp
+
+    def index_impl(data):
+        return Index(data, Dict.empty(key_type, value_type))
+
+    return context.compile_internal(builder, index_impl, sig, args)
+
+
+# Helper to convert the unicodecharseq (numpy string scalar) into a unicode_type
+# (regular string)
+def maybe_cast_str(x):
+    # Dummy function that numba can overload
+    pass
+
+
+@overload(maybe_cast_str)
+def maybe_cast_str_impl(x):
+    """Converts numba UnicodeCharSeq (numpy string scalar) -> unicode type (string).
+    Is a no-op for other types."""
+    if isinstance(x, types.UnicodeCharSeq):
+        return lambda x: str(x)
+    else:
+        return lambda x: x
+
+
+@unbox(IndexType)
+def unbox_index(typ, obj, c):
+    """
+    Convert a Index object to a native structure.
+
+    Note: Object dtype is not allowed here
+    """
+    data_obj = c.pyapi.object_getattr_string(obj, "_numba_data")
+    index = cgutils.create_struct_proxy(typ)(c.context, c.builder)
+    # If we see an object array, assume its been validated as only containing strings
+    # We still need to do the conversion though
+    index.data = c.unbox(typ.as_array, data_obj).value
+    typed_dict_obj = c.pyapi.unserialize(c.pyapi.serialize_object(numba.typed.Dict))
+    # Create an empty typed dict in numba for the hashmap for indexing
+    # equiv of numba.typed.Dict.empty(typ.dtype, types.intp)
+    arr_type_obj = c.pyapi.unserialize(c.pyapi.serialize_object(typ.dtype))
+    intp_type_obj = c.pyapi.unserialize(c.pyapi.serialize_object(types.intp))
+    hashmap_obj = c.pyapi.call_method(
+        typed_dict_obj, "empty", (arr_type_obj, intp_type_obj)
+    )
+    index.hashmap = c.unbox(types.DictType(typ.dtype, types.intp), hashmap_obj).value
+    # Set the parent for speedy boxing.
+    index.parent = obj
+
+    # Decrefs
+    c.pyapi.decref(data_obj)
+    c.pyapi.decref(arr_type_obj)
+    c.pyapi.decref(intp_type_obj)
+    c.pyapi.decref(typed_dict_obj)
+
+    return NativeValue(index._getvalue())
+
+
+@unbox(SeriesType)
+def unbox_series(typ, obj, c):
+    """
+    Convert a Series object to a native structure.
+    """
+    index_obj = c.pyapi.object_getattr_string(obj, "index")
+    values_obj = c.pyapi.object_getattr_string(obj, "values")
+    name_obj = c.pyapi.object_getattr_string(obj, "name")
+
+    series = cgutils.create_struct_proxy(typ)(c.context, c.builder)
+    series.index = c.unbox(typ.index, index_obj).value
+    series.values = c.unbox(typ.values, values_obj).value
+    series.name = c.unbox(typ.namety, name_obj).value
+
+    # Decrefs
+    c.pyapi.decref(index_obj)
+    c.pyapi.decref(values_obj)
+    c.pyapi.decref(name_obj)
+
+    return NativeValue(series._getvalue())
+
+
+@box(IndexType)
+def box_index(typ, val, c):
+    """
+    Convert a native index structure to a Index object.
+
+    If our native index is of a numpy string dtype, we'll cast it to
+    object.
+    """
+    # First build a Numpy array object, then wrap it in a Index
+    index = cgutils.create_struct_proxy(typ)(c.context, c.builder, value=val)
+
+    res = cgutils.alloca_once_value(c.builder, index.parent)
+
+    # Does parent exist?
+    # (it means already boxed once, or Index same as original df.index or df.columns)
+    # xref https://github.com/numba/numba/blob/596e8a55334cc46854e3192766e643767bd7c934/numba/core/boxing.py#L593C17-L593C17
+    with c.builder.if_else(cgutils.is_not_null(c.builder, index.parent)) as (
+        has_parent,
+        otherwise,
+    ):
+        with has_parent:
+            c.pyapi.incref(index.parent)
+        with otherwise:
+            # TODO: preserve the original class for the index
+            # Also need preserve the name of the Index
+            # class_obj = c.pyapi.unserialize(c.pyapi.serialize_object(typ.pyclass))
+            class_obj = c.pyapi.unserialize(c.pyapi.serialize_object(Index))
+            array_obj = c.box(typ.as_array, index.data)
+            if isinstance(typ.dtype, types.UnicodeCharSeq):
+                # We converted to numpy string dtype, convert back
+                # to object since _simple_new won't do that for uss
+                object_str_obj = c.pyapi.unserialize(c.pyapi.serialize_object("object"))
+                array_obj = c.pyapi.call_method(array_obj, "astype", (object_str_obj,))
+                c.pyapi.decref(object_str_obj)
+            # this is basically Index._simple_new(array_obj, name_obj) in python
+            index_obj = c.pyapi.call_method(class_obj, "_simple_new", (array_obj,))
+            index.parent = index_obj
+            c.builder.store(index_obj, res)
+
+            # Decrefs
+            c.pyapi.decref(class_obj)
+            c.pyapi.decref(array_obj)
+    return c.builder.load(res)
+
+
+@box(SeriesType)
+def box_series(typ, val, c):
+    """
+    Convert a native series structure to a Series object.
+    """
+    series = cgutils.create_struct_proxy(typ)(c.context, c.builder, value=val)
+    series_const_obj = c.pyapi.unserialize(c.pyapi.serialize_object(Series._from_mgr))
+    mgr_const_obj = c.pyapi.unserialize(
+        c.pyapi.serialize_object(SingleBlockManager.from_array)
+    )
+    index_obj = c.box(typ.index, series.index)
+    array_obj = c.box(typ.as_array, series.values)
+    name_obj = c.box(typ.namety, series.name)
+    # This is basically equivalent of
+    # pd.Series(data=array_obj, index=index_obj)
+    # To improve perf, we will construct the Series from a manager
+    # object to avoid checks.
+    # We'll also set the name attribute manually to avoid validation
+    mgr_obj = c.pyapi.call_function_objargs(
+        mgr_const_obj,
+        (
+            array_obj,
+            index_obj,
+        ),
+    )
+    mgr_axes_obj = c.pyapi.object_getattr_string(mgr_obj, "axes")
+    # Series._constructor_from_mgr(mgr, axes)
+    series_obj = c.pyapi.call_function_objargs(
+        series_const_obj, (mgr_obj, mgr_axes_obj)
+    )
+    c.pyapi.object_setattr_string(series_obj, "_name", name_obj)
+
+    # Decrefs
+    c.pyapi.decref(series_const_obj)
+    c.pyapi.decref(mgr_axes_obj)
+    c.pyapi.decref(mgr_obj)
+    c.pyapi.decref(mgr_const_obj)
+    c.pyapi.decref(index_obj)
+    c.pyapi.decref(array_obj)
+    c.pyapi.decref(name_obj)
+
+    return series_obj
+
+
+# Add common series reductions (e.g. mean, sum),
+# and also add common binops (e.g. add, sub, mul, div)
+def generate_series_reduction(ser_reduction, ser_method):
+    @overload_method(SeriesType, ser_reduction)
+    def series_reduction(series):
+        def series_reduction_impl(series):
+            return ser_method(series.values)
+
+        return series_reduction_impl
+
+    return series_reduction
+
+
+def generate_series_binop(binop):
+    @overload(binop)
+    def series_binop(series1, value):
+        if isinstance(series1, SeriesType):
+            if isinstance(value, SeriesType):
+
+                def series_binop_impl(series1, series2):
+                    # TODO: Check index matching?
+                    return Series(
+                        binop(series1.values, series2.values),
+                        series1.index,
+                        series1.name,
+                    )
+
+                return series_binop_impl
+            else:
+
+                def series_binop_impl(series1, value):
+                    return Series(
+                        binop(series1.values, value), series1.index, series1.name
+                    )
+
+                return series_binop_impl
+
+    return series_binop
+
+
+series_reductions = [
+    ("sum", np.sum),
+    ("mean", np.mean),
+    # Disabled due to discrepancies between numba std. dev
+    # and pandas std. dev (no way to specify dof)
+    # ("std", np.std),
+    # ("var", np.var),
+    ("min", np.min),
+    ("max", np.max),
+]
+for reduction, reduction_method in series_reductions:
+    generate_series_reduction(reduction, reduction_method)
+
+series_binops = [operator.add, operator.sub, operator.mul, operator.truediv]
+
+for ser_binop in series_binops:
+    generate_series_binop(ser_binop)
+
+
+# get_loc on Index
+@overload_method(IndexType, "get_loc")
+def index_get_loc(index, item):
+    def index_get_loc_impl(index, item):
+        # Initialize the hash table if not initialized
+        if len(index.hashmap) == 0:
+            for i, val in enumerate(index._data):
+                index.hashmap[val] = i
+        return index.hashmap[item]
+
+    return index_get_loc_impl
+
+
+# Indexing for Series/Index
+@overload(operator.getitem)
+def series_indexing(series, item):
+    if isinstance(series, SeriesType):
+
+        def series_getitem(series, item):
+            loc = series.index.get_loc(item)
+            return series.iloc[loc]
+
+        return series_getitem
+
+
+@overload(operator.getitem)
+def index_indexing(index, idx):
+    if isinstance(index, IndexType):
+
+        def index_getitem(index, idx):
+            return index._data[idx]
+
+        return index_getitem
+
+
+class IlocType(types.Type):
+    def __init__(self, obj_type) -> None:
+        self.obj_type = obj_type
+        name = f"iLocIndexer({obj_type})"
+        super().__init__(name=name)
+
+    @property
+    def key(self):
+        return self.obj_type
+
+
+@typeof_impl.register(_iLocIndexer)
+def typeof_iloc(val, c):
+    objtype = typeof_impl(val.obj, c)
+    return IlocType(objtype)
+
+
+@type_callable(_iLocIndexer)
+def type_iloc_constructor(context):
+    def typer(obj):
+        if isinstance(obj, SeriesType):
+            return IlocType(obj)
+
+    return typer
+
+
+@lower_builtin(_iLocIndexer, SeriesType)
+def iloc_constructor(context, builder, sig, args):
+    (obj,) = args
+    iloc_indexer = cgutils.create_struct_proxy(sig.return_type)(context, builder)
+    iloc_indexer.obj = obj
+    return impl_ret_borrowed(
+        context, builder, sig.return_type, iloc_indexer._getvalue()
+    )
+
+
+@register_model(IlocType)
+class ILocModel(models.StructModel):
+    def __init__(self, dmm, fe_type) -> None:
+        members = [("obj", fe_type.obj_type)]
+        models.StructModel.__init__(self, dmm, fe_type, members)
+
+
+make_attribute_wrapper(IlocType, "obj", "obj")
+
+
+@overload_attribute(SeriesType, "iloc")
+def series_iloc(series):
+    def get(series):
+        return _iLocIndexer(series)
+
+    return get
+
+
+@overload(operator.getitem)
+def iloc_getitem(iloc_indexer, i):
+    if isinstance(iloc_indexer, IlocType):
+
+        def getitem_impl(iloc_indexer, i):
+            return iloc_indexer.obj.values[i]
+
+        return getitem_impl

.venv_haddock/lib/python3.12/site-packages/pandas/core/_numba/kernels/__init__.py

@@ -0,0 +1,27 @@
+from pandas.core._numba.kernels.mean_ import (
+    grouped_mean,
+    sliding_mean,
+)
+from pandas.core._numba.kernels.min_max_ import (
+    grouped_min_max,
+    sliding_min_max,
+)
+from pandas.core._numba.kernels.sum_ import (
+    grouped_sum,
+    sliding_sum,
+)
+from pandas.core._numba.kernels.var_ import (
+    grouped_var,
+    sliding_var,
+)
+
+__all__ = [
+    "sliding_mean",
+    "grouped_mean",
+    "sliding_sum",
+    "grouped_sum",
+    "sliding_var",
+    "grouped_var",
+    "sliding_min_max",
+    "grouped_min_max",
+]

.venv_haddock/lib/python3.12/site-packages/pandas/core/_numba/kernels/mean_.py

@@ -0,0 +1,196 @@
+"""
+Numba 1D mean kernels that can be shared by
+* Dataframe / Series
+* groupby
+* rolling / expanding
+
+Mirrors pandas/_libs/window/aggregation.pyx
+"""
+from __future__ import annotations
+
+from typing import TYPE_CHECKING
+
+import numba
+import numpy as np
+
+from pandas.core._numba.kernels.shared import is_monotonic_increasing
+from pandas.core._numba.kernels.sum_ import grouped_kahan_sum
+
+if TYPE_CHECKING:
+    from pandas._typing import npt
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def add_mean(
+    val: float,
+    nobs: int,
+    sum_x: float,
+    neg_ct: int,
+    compensation: float,
+    num_consecutive_same_value: int,
+    prev_value: float,
+) -> tuple[int, float, int, float, int, float]:
+    if not np.isnan(val):
+        nobs += 1
+        y = val - compensation
+        t = sum_x + y
+        compensation = t - sum_x - y
+        sum_x = t
+        if val < 0:
+            neg_ct += 1
+
+        if val == prev_value:
+            num_consecutive_same_value += 1
+        else:
+            num_consecutive_same_value = 1
+        prev_value = val
+
+    return nobs, sum_x, neg_ct, compensation, num_consecutive_same_value, prev_value
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def remove_mean(
+    val: float, nobs: int, sum_x: float, neg_ct: int, compensation: float
+) -> tuple[int, float, int, float]:
+    if not np.isnan(val):
+        nobs -= 1
+        y = -val - compensation
+        t = sum_x + y
+        compensation = t - sum_x - y
+        sum_x = t
+        if val < 0:
+            neg_ct -= 1
+    return nobs, sum_x, neg_ct, compensation
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def sliding_mean(
+    values: np.ndarray,
+    result_dtype: np.dtype,
+    start: np.ndarray,
+    end: np.ndarray,
+    min_periods: int,
+) -> tuple[np.ndarray, list[int]]:
+    N = len(start)
+    nobs = 0
+    sum_x = 0.0
+    neg_ct = 0
+    compensation_add = 0.0
+    compensation_remove = 0.0
+
+    is_monotonic_increasing_bounds = is_monotonic_increasing(
+        start
+    ) and is_monotonic_increasing(end)
+
+    output = np.empty(N, dtype=result_dtype)
+
+    for i in range(N):
+        s = start[i]
+        e = end[i]
+        if i == 0 or not is_monotonic_increasing_bounds:
+            prev_value = values[s]
+            num_consecutive_same_value = 0
+
+            for j in range(s, e):
+                val = values[j]
+                (
+                    nobs,
+                    sum_x,
+                    neg_ct,
+                    compensation_add,
+                    num_consecutive_same_value,
+                    prev_value,
+                ) = add_mean(
+                    val,
+                    nobs,
+                    sum_x,
+                    neg_ct,
+                    compensation_add,
+                    num_consecutive_same_value,
+                    prev_value,  # pyright: ignore[reportGeneralTypeIssues]
+                )
+        else:
+            for j in range(start[i - 1], s):
+                val = values[j]
+                nobs, sum_x, neg_ct, compensation_remove = remove_mean(
+                    val, nobs, sum_x, neg_ct, compensation_remove
+                )
+
+            for j in range(end[i - 1], e):
+                val = values[j]
+                (
+                    nobs,
+                    sum_x,
+                    neg_ct,
+                    compensation_add,
+                    num_consecutive_same_value,
+                    prev_value,
+                ) = add_mean(
+                    val,
+                    nobs,
+                    sum_x,
+                    neg_ct,
+                    compensation_add,
+                    num_consecutive_same_value,
+                    prev_value,  # pyright: ignore[reportGeneralTypeIssues]
+                )
+
+        if nobs >= min_periods and nobs > 0:
+            result = sum_x / nobs
+            if num_consecutive_same_value >= nobs:
+                result = prev_value
+            elif neg_ct == 0 and result < 0:
+                result = 0
+            elif neg_ct == nobs and result > 0:
+                result = 0
+        else:
+            result = np.nan
+
+        output[i] = result
+
+        if not is_monotonic_increasing_bounds:
+            nobs = 0
+            sum_x = 0.0
+            neg_ct = 0
+            compensation_remove = 0.0
+
+    # na_position is empty list since float64 can already hold nans
+    # Do list comprehension, since numba cannot figure out that na_pos is
+    # empty list of ints on its own
+    na_pos = [0 for i in range(0)]
+    return output, na_pos
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def grouped_mean(
+    values: np.ndarray,
+    result_dtype: np.dtype,
+    labels: npt.NDArray[np.intp],
+    ngroups: int,
+    min_periods: int,
+) -> tuple[np.ndarray, list[int]]:
+    output, nobs_arr, comp_arr, consecutive_counts, prev_vals = grouped_kahan_sum(
+        values, result_dtype, labels, ngroups
+    )
+
+    # Post-processing, replace sums that don't satisfy min_periods
+    for lab in range(ngroups):
+        nobs = nobs_arr[lab]
+        num_consecutive_same_value = consecutive_counts[lab]
+        prev_value = prev_vals[lab]
+        sum_x = output[lab]
+        if nobs >= min_periods:
+            if num_consecutive_same_value >= nobs:
+                result = prev_value * nobs
+            else:
+                result = sum_x
+        else:
+            result = np.nan
+        result /= nobs
+        output[lab] = result
+
+    # na_position is empty list since float64 can already hold nans
+    # Do list comprehension, since numba cannot figure out that na_pos is
+    # empty list of ints on its own
+    na_pos = [0 for i in range(0)]
+    return output, na_pos

.venv_haddock/lib/python3.12/site-packages/pandas/core/_numba/kernels/min_max_.py

@@ -0,0 +1,125 @@
+"""
+Numba 1D min/max kernels that can be shared by
+* Dataframe / Series
+* groupby
+* rolling / expanding
+
+Mirrors pandas/_libs/window/aggregation.pyx
+"""
+from __future__ import annotations
+
+from typing import TYPE_CHECKING
+
+import numba
+import numpy as np
+
+if TYPE_CHECKING:
+    from pandas._typing import npt
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def sliding_min_max(
+    values: np.ndarray,
+    result_dtype: np.dtype,
+    start: np.ndarray,
+    end: np.ndarray,
+    min_periods: int,
+    is_max: bool,
+) -> tuple[np.ndarray, list[int]]:
+    N = len(start)
+    nobs = 0
+    output = np.empty(N, dtype=result_dtype)
+    na_pos = []
+    # Use deque once numba supports it
+    # https://github.com/numba/numba/issues/7417
+    Q: list = []
+    W: list = []
+    for i in range(N):
+        curr_win_size = end[i] - start[i]
+        if i == 0:
+            st = start[i]
+        else:
+            st = end[i - 1]
+
+        for k in range(st, end[i]):
+            ai = values[k]
+            if not np.isnan(ai):
+                nobs += 1
+            elif is_max:
+                ai = -np.inf
+            else:
+                ai = np.inf
+            # Discard previous entries if we find new min or max
+            if is_max:
+                while Q and ((ai >= values[Q[-1]]) or values[Q[-1]] != values[Q[-1]]):
+                    Q.pop()
+            else:
+                while Q and ((ai <= values[Q[-1]]) or values[Q[-1]] != values[Q[-1]]):
+                    Q.pop()
+            Q.append(k)
+            W.append(k)
+
+        # Discard entries outside and left of current window
+        while Q and Q[0] <= start[i] - 1:
+            Q.pop(0)
+        while W and W[0] <= start[i] - 1:
+            if not np.isnan(values[W[0]]):
+                nobs -= 1
+            W.pop(0)
+
+        # Save output based on index in input value array
+        if Q and curr_win_size > 0 and nobs >= min_periods:
+            output[i] = values[Q[0]]
+        else:
+            if values.dtype.kind != "i":
+                output[i] = np.nan
+            else:
+                na_pos.append(i)
+
+    return output, na_pos
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def grouped_min_max(
+    values: np.ndarray,
+    result_dtype: np.dtype,
+    labels: npt.NDArray[np.intp],
+    ngroups: int,
+    min_periods: int,
+    is_max: bool,
+) -> tuple[np.ndarray, list[int]]:
+    N = len(labels)
+    nobs = np.zeros(ngroups, dtype=np.int64)
+    na_pos = []
+    output = np.empty(ngroups, dtype=result_dtype)
+
+    for i in range(N):
+        lab = labels[i]
+        val = values[i]
+        if lab < 0:
+            continue
+
+        if values.dtype.kind == "i" or not np.isnan(val):
+            nobs[lab] += 1
+        else:
+            # NaN value cannot be a min/max value
+            continue
+
+        if nobs[lab] == 1:
+            # First element in group, set output equal to this
+            output[lab] = val
+            continue
+
+        if is_max:
+            if val > output[lab]:
+                output[lab] = val
+        else:
+            if val < output[lab]:
+                output[lab] = val
+
+    # Set labels that don't satisfy min_periods as np.nan
+    for lab, count in enumerate(nobs):
+        if count < min_periods:
+            na_pos.append(lab)
+
+    return output, na_pos

.venv_haddock/lib/python3.12/site-packages/pandas/core/_numba/kernels/shared.py

@@ -0,0 +1,29 @@
+from __future__ import annotations
+
+from typing import TYPE_CHECKING
+
+import numba
+
+if TYPE_CHECKING:
+    import numpy as np
+
+
+@numba.jit(
+    # error: Any? not callable
+    numba.boolean(numba.int64[:]),  # type: ignore[misc]
+    nopython=True,
+    nogil=True,
+    parallel=False,
+)
+def is_monotonic_increasing(bounds: np.ndarray) -> bool:
+    """Check if int64 values are monotonically increasing."""
+    n = len(bounds)
+    if n < 2:
+        return True
+    prev = bounds[0]
+    for i in range(1, n):
+        cur = bounds[i]
+        if cur < prev:
+            return False
+        prev = cur
+    return True

.venv_haddock/lib/python3.12/site-packages/pandas/core/_numba/kernels/sum_.py

@@ -0,0 +1,244 @@
+"""
+Numba 1D sum kernels that can be shared by
+* Dataframe / Series
+* groupby
+* rolling / expanding
+
+Mirrors pandas/_libs/window/aggregation.pyx
+"""
+from __future__ import annotations
+
+from typing import (
+    TYPE_CHECKING,
+    Any,
+)
+
+import numba
+from numba.extending import register_jitable
+import numpy as np
+
+if TYPE_CHECKING:
+    from pandas._typing import npt
+
+from pandas.core._numba.kernels.shared import is_monotonic_increasing
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def add_sum(
+    val: Any,
+    nobs: int,
+    sum_x: Any,
+    compensation: Any,
+    num_consecutive_same_value: int,
+    prev_value: Any,
+) -> tuple[int, Any, Any, int, Any]:
+    if not np.isnan(val):
+        nobs += 1
+        y = val - compensation
+        t = sum_x + y
+        compensation = t - sum_x - y
+        sum_x = t
+
+        if val == prev_value:
+            num_consecutive_same_value += 1
+        else:
+            num_consecutive_same_value = 1
+        prev_value = val
+
+    return nobs, sum_x, compensation, num_consecutive_same_value, prev_value
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def remove_sum(
+    val: Any, nobs: int, sum_x: Any, compensation: Any
+) -> tuple[int, Any, Any]:
+    if not np.isnan(val):
+        nobs -= 1
+        y = -val - compensation
+        t = sum_x + y
+        compensation = t - sum_x - y
+        sum_x = t
+    return nobs, sum_x, compensation
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def sliding_sum(
+    values: np.ndarray,
+    result_dtype: np.dtype,
+    start: np.ndarray,
+    end: np.ndarray,
+    min_periods: int,
+) -> tuple[np.ndarray, list[int]]:
+    dtype = values.dtype
+
+    na_val: object = np.nan
+    if dtype.kind == "i":
+        na_val = 0
+
+    N = len(start)
+    nobs = 0
+    sum_x = 0
+    compensation_add = 0
+    compensation_remove = 0
+    na_pos = []
+
+    is_monotonic_increasing_bounds = is_monotonic_increasing(
+        start
+    ) and is_monotonic_increasing(end)
+
+    output = np.empty(N, dtype=result_dtype)
+
+    for i in range(N):
+        s = start[i]
+        e = end[i]
+        if i == 0 or not is_monotonic_increasing_bounds:
+            prev_value = values[s]
+            num_consecutive_same_value = 0
+
+            for j in range(s, e):
+                val = values[j]
+                (
+                    nobs,
+                    sum_x,
+                    compensation_add,
+                    num_consecutive_same_value,
+                    prev_value,
+                ) = add_sum(
+                    val,
+                    nobs,
+                    sum_x,
+                    compensation_add,
+                    num_consecutive_same_value,
+                    prev_value,
+                )
+        else:
+            for j in range(start[i - 1], s):
+                val = values[j]
+                nobs, sum_x, compensation_remove = remove_sum(
+                    val, nobs, sum_x, compensation_remove
+                )
+
+            for j in range(end[i - 1], e):
+                val = values[j]
+                (
+                    nobs,
+                    sum_x,
+                    compensation_add,
+                    num_consecutive_same_value,
+                    prev_value,
+                ) = add_sum(
+                    val,
+                    nobs,
+                    sum_x,
+                    compensation_add,
+                    num_consecutive_same_value,
+                    prev_value,
+                )
+
+        if nobs == 0 == min_periods:
+            result: object = 0
+        elif nobs >= min_periods:
+            if num_consecutive_same_value >= nobs:
+                result = prev_value * nobs
+            else:
+                result = sum_x
+        else:
+            result = na_val
+            if dtype.kind == "i":
+                na_pos.append(i)
+
+        output[i] = result
+
+        if not is_monotonic_increasing_bounds:
+            nobs = 0
+            sum_x = 0
+            compensation_remove = 0
+
+    return output, na_pos
+
+
+# Mypy/pyright don't like the fact that the decorator is untyped
+@register_jitable  # type: ignore[misc]
+def grouped_kahan_sum(
+    values: np.ndarray,
+    result_dtype: np.dtype,
+    labels: npt.NDArray[np.intp],
+    ngroups: int,
+) -> tuple[
+    np.ndarray, npt.NDArray[np.int64], np.ndarray, npt.NDArray[np.int64], np.ndarray
+]:
+    N = len(labels)
+
+    nobs_arr = np.zeros(ngroups, dtype=np.int64)
+    comp_arr = np.zeros(ngroups, dtype=values.dtype)
+    consecutive_counts = np.zeros(ngroups, dtype=np.int64)
+    prev_vals = np.zeros(ngroups, dtype=values.dtype)
+    output = np.zeros(ngroups, dtype=result_dtype)
+
+    for i in range(N):
+        lab = labels[i]
+        val = values[i]
+
+        if lab < 0:
+            continue
+
+        sum_x = output[lab]
+        nobs = nobs_arr[lab]
+        compensation_add = comp_arr[lab]
+        num_consecutive_same_value = consecutive_counts[lab]
+        prev_value = prev_vals[lab]
+
+        (
+            nobs,
+            sum_x,
+            compensation_add,
+            num_consecutive_same_value,
+            prev_value,
+        ) = add_sum(
+            val,
+            nobs,
+            sum_x,
+            compensation_add,
+            num_consecutive_same_value,
+            prev_value,
+        )
+
+        output[lab] = sum_x
+        consecutive_counts[lab] = num_consecutive_same_value
+        prev_vals[lab] = prev_value
+        comp_arr[lab] = compensation_add
+        nobs_arr[lab] = nobs
+    return output, nobs_arr, comp_arr, consecutive_counts, prev_vals
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def grouped_sum(
+    values: np.ndarray,
+    result_dtype: np.dtype,
+    labels: npt.NDArray[np.intp],
+    ngroups: int,
+    min_periods: int,
+) -> tuple[np.ndarray, list[int]]:
+    na_pos = []
+
+    output, nobs_arr, comp_arr, consecutive_counts, prev_vals = grouped_kahan_sum(
+        values, result_dtype, labels, ngroups
+    )
+
+    # Post-processing, replace sums that don't satisfy min_periods
+    for lab in range(ngroups):
+        nobs = nobs_arr[lab]
+        num_consecutive_same_value = consecutive_counts[lab]
+        prev_value = prev_vals[lab]
+        sum_x = output[lab]
+        if nobs >= min_periods:
+            if num_consecutive_same_value >= nobs:
+                result = prev_value * nobs
+            else:
+                result = sum_x
+        else:
+            result = sum_x  # Don't change val, will be replaced by nan later
+            na_pos.append(lab)
+        output[lab] = result
+
+    return output, na_pos

.venv_haddock/lib/python3.12/site-packages/pandas/core/_numba/kernels/var_.py

@@ -0,0 +1,245 @@
+"""
+Numba 1D var kernels that can be shared by
+* Dataframe / Series
+* groupby
+* rolling / expanding
+
+Mirrors pandas/_libs/window/aggregation.pyx
+"""
+from __future__ import annotations
+
+from typing import TYPE_CHECKING
+
+import numba
+import numpy as np
+
+if TYPE_CHECKING:
+    from pandas._typing import npt
+
+from pandas.core._numba.kernels.shared import is_monotonic_increasing
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def add_var(
+    val: float,
+    nobs: int,
+    mean_x: float,
+    ssqdm_x: float,
+    compensation: float,
+    num_consecutive_same_value: int,
+    prev_value: float,
+) -> tuple[int, float, float, float, int, float]:
+    if not np.isnan(val):
+        if val == prev_value:
+            num_consecutive_same_value += 1
+        else:
+            num_consecutive_same_value = 1
+        prev_value = val
+
+        nobs += 1
+        prev_mean = mean_x - compensation
+        y = val - compensation
+        t = y - mean_x
+        compensation = t + mean_x - y
+        delta = t
+        if nobs:
+            mean_x += delta / nobs
+        else:
+            mean_x = 0
+        ssqdm_x += (val - prev_mean) * (val - mean_x)
+    return nobs, mean_x, ssqdm_x, compensation, num_consecutive_same_value, prev_value
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def remove_var(
+    val: float, nobs: int, mean_x: float, ssqdm_x: float, compensation: float
+) -> tuple[int, float, float, float]:
+    if not np.isnan(val):
+        nobs -= 1
+        if nobs:
+            prev_mean = mean_x - compensation
+            y = val - compensation
+            t = y - mean_x
+            compensation = t + mean_x - y
+            delta = t
+            mean_x -= delta / nobs
+            ssqdm_x -= (val - prev_mean) * (val - mean_x)
+        else:
+            mean_x = 0
+            ssqdm_x = 0
+    return nobs, mean_x, ssqdm_x, compensation
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def sliding_var(
+    values: np.ndarray,
+    result_dtype: np.dtype,
+    start: np.ndarray,
+    end: np.ndarray,
+    min_periods: int,
+    ddof: int = 1,
+) -> tuple[np.ndarray, list[int]]:
+    N = len(start)
+    nobs = 0
+    mean_x = 0.0
+    ssqdm_x = 0.0
+    compensation_add = 0.0
+    compensation_remove = 0.0
+
+    min_periods = max(min_periods, 1)
+    is_monotonic_increasing_bounds = is_monotonic_increasing(
+        start
+    ) and is_monotonic_increasing(end)
+
+    output = np.empty(N, dtype=result_dtype)
+
+    for i in range(N):
+        s = start[i]
+        e = end[i]
+        if i == 0 or not is_monotonic_increasing_bounds:
+            prev_value = values[s]
+            num_consecutive_same_value = 0
+
+            for j in range(s, e):
+                val = values[j]
+                (
+                    nobs,
+                    mean_x,
+                    ssqdm_x,
+                    compensation_add,
+                    num_consecutive_same_value,
+                    prev_value,
+                ) = add_var(
+                    val,
+                    nobs,
+                    mean_x,
+                    ssqdm_x,
+                    compensation_add,
+                    num_consecutive_same_value,
+                    prev_value,
+                )
+        else:
+            for j in range(start[i - 1], s):
+                val = values[j]
+                nobs, mean_x, ssqdm_x, compensation_remove = remove_var(
+                    val, nobs, mean_x, ssqdm_x, compensation_remove
+                )
+
+            for j in range(end[i - 1], e):
+                val = values[j]
+                (
+                    nobs,
+                    mean_x,
+                    ssqdm_x,
+                    compensation_add,
+                    num_consecutive_same_value,
+                    prev_value,
+                ) = add_var(
+                    val,
+                    nobs,
+                    mean_x,
+                    ssqdm_x,
+                    compensation_add,
+                    num_consecutive_same_value,
+                    prev_value,
+                )
+
+        if nobs >= min_periods and nobs > ddof:
+            if nobs == 1 or num_consecutive_same_value >= nobs:
+                result = 0.0
+            else:
+                result = ssqdm_x / (nobs - ddof)
+        else:
+            result = np.nan
+
+        output[i] = result
+
+        if not is_monotonic_increasing_bounds:
+            nobs = 0
+            mean_x = 0.0
+            ssqdm_x = 0.0
+            compensation_remove = 0.0
+
+    # na_position is empty list since float64 can already hold nans
+    # Do list comprehension, since numba cannot figure out that na_pos is
+    # empty list of ints on its own
+    na_pos = [0 for i in range(0)]
+    return output, na_pos
+
+
+@numba.jit(nopython=True, nogil=True, parallel=False)
+def grouped_var(
+    values: np.ndarray,
+    result_dtype: np.dtype,
+    labels: npt.NDArray[np.intp],
+    ngroups: int,
+    min_periods: int,
+    ddof: int = 1,
+) -> tuple[np.ndarray, list[int]]:
+    N = len(labels)
+
+    nobs_arr = np.zeros(ngroups, dtype=np.int64)
+    comp_arr = np.zeros(ngroups, dtype=values.dtype)
+    consecutive_counts = np.zeros(ngroups, dtype=np.int64)
+    prev_vals = np.zeros(ngroups, dtype=values.dtype)
+    output = np.zeros(ngroups, dtype=result_dtype)
+    means = np.zeros(ngroups, dtype=result_dtype)
+
+    for i in range(N):
+        lab = labels[i]
+        val = values[i]
+
+        if lab < 0:
+            continue
+
+        mean_x = means[lab]
+        ssqdm_x = output[lab]
+        nobs = nobs_arr[lab]
+        compensation_add = comp_arr[lab]
+        num_consecutive_same_value = consecutive_counts[lab]
+        prev_value = prev_vals[lab]
+
+        (
+            nobs,
+            mean_x,
+            ssqdm_x,
+            compensation_add,
+            num_consecutive_same_value,
+            prev_value,
+        ) = add_var(
+            val,
+            nobs,
+            mean_x,
+            ssqdm_x,
+            compensation_add,
+            num_consecutive_same_value,
+            prev_value,
+        )
+
+        output[lab] = ssqdm_x
+        means[lab] = mean_x
+        consecutive_counts[lab] = num_consecutive_same_value
+        prev_vals[lab] = prev_value
+        comp_arr[lab] = compensation_add
+        nobs_arr[lab] = nobs
+
+    # Post-processing, replace vars that don't satisfy min_periods
+    for lab in range(ngroups):
+        nobs = nobs_arr[lab]
+        num_consecutive_same_value = consecutive_counts[lab]
+        ssqdm_x = output[lab]
+        if nobs >= min_periods and nobs > ddof:
+            if nobs == 1 or num_consecutive_same_value >= nobs:
+                result = 0.0
+            else:
+                result = ssqdm_x / (nobs - ddof)
+        else:
+            result = np.nan
+        output[lab] = result
+
+    # Second pass to get the std.dev
+    # na_position is empty list since float64 can already hold nans
+    # Do list comprehension, since numba cannot figure out that na_pos is
+    # empty list of ints on its own
+    na_pos = [0 for i in range(0)]
+    return output, na_pos

.venv_haddock/lib/python3.12/site-packages/pandas/core/array_algos/__init__.py

@@ -0,0 +1,9 @@
+"""
+core.array_algos is for algorithms that operate on ndarray and ExtensionArray.
+These should:
+
+- Assume that any Index, Series, or DataFrame objects have already been unwrapped.
+- Assume that any list arguments have already been cast to ndarray/EA.
+- Not depend on Index, Series, or DataFrame, nor import any of these.
+- May dispatch to ExtensionArray methods, but should not import from core.arrays.
+"""