Sys1Cal-v1 / scripts /evaluate_sys1cal.py
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Add Sys1Cal-v1 dataset benchmark
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#!/usr/bin/env python3
"""Evaluate Sys1Cal-v1 predictions against an exact-probability JSONL split."""
from __future__ import annotations
import argparse
import json
import statistics
import sys
from collections import defaultdict
from pathlib import Path
from typing import Any
def read_jsonl(path: Path) -> list[dict[str, Any]]:
rows = []
with path.open("r", encoding="utf-8") as handle:
for line_number, line in enumerate(handle, start=1):
if not line.strip():
continue
try:
rows.append(json.loads(line))
except json.JSONDecodeError as exc:
raise SystemExit(f"{path}:{line_number}: invalid JSON: {exc}") from exc
return rows
def normalize(distribution: dict[str, Any], outcomes: list[str]) -> dict[str, float]:
cleaned = {label: max(0.0, float(distribution.get(label, 0.0))) for label in outcomes}
total = sum(cleaned.values())
if total <= 0.0:
return {label: 1.0 / len(outcomes) for label in outcomes}
return {label: value / total for label, value in cleaned.items()}
def argmax(distribution: dict[str, float]) -> str:
return max(distribution.items(), key=lambda item: (item[1], item[0]))[0]
def total_variation(
gold: dict[str, float], prediction: dict[str, float], outcomes: list[str]
) -> float:
return 0.5 * sum(abs(gold[label] - prediction[label]) for label in outcomes)
def brier_regret(
gold: dict[str, float], prediction: dict[str, float], outcomes: list[str]
) -> float:
return sum((prediction[label] - gold[label]) ** 2 for label in outcomes)
def extract_distribution(row: dict[str, Any], item: dict[str, Any]) -> dict[str, float]:
outcomes = item["outcomes"]
for key in ("predicted_distribution", "distribution", "prediction", "probabilities"):
value = row.get(key)
if isinstance(value, dict):
return normalize(map_labels(value, outcomes), outcomes)
if "probability_true" in row:
p_true = float(row["probability_true"])
return normalize({"True": p_true, "False": 1.0 - p_true}, outcomes)
if "p_true" in row:
p_true = float(row["p_true"])
return normalize({"True": p_true, "False": 1.0 - p_true}, outcomes)
raise ValueError(
"prediction row must contain predicted_distribution, distribution, "
"prediction, probabilities, probability_true, or p_true"
)
def map_labels(distribution: dict[str, Any], outcomes: list[str]) -> dict[str, Any]:
if all(label in distribution for label in outcomes):
return distribution
lower_to_label = {str(label).lower(): label for label in outcomes}
mapped = {}
for raw_label, value in distribution.items():
label = lower_to_label.get(str(raw_label).lower())
if label is not None:
mapped[label] = value
return mapped
def prediction_group(row: dict[str, Any]) -> str:
model = row.get("model") or row.get("model_name") or "submission"
response_type = row.get("response_type")
api_metadata = row.get("api_metadata")
if response_type is None and isinstance(api_metadata, dict):
response_type = api_metadata.get("question_type")
return f"{model}:{response_type}" if response_type else str(model)
def summarize(values: list[float]) -> dict[str, float]:
if not values:
return {
"mean": 0.0,
"median": 0.0,
"std": 0.0,
"p90": 0.0,
"p95": 0.0,
"max": 0.0,
}
ordered = sorted(values)
return {
"mean": statistics.fmean(values),
"median": statistics.median(values),
"std": statistics.pstdev(values) if len(values) > 1 else 0.0,
"p90": ordered[min(len(ordered) - 1, int(0.90 * (len(ordered) - 1)))],
"p95": ordered[min(len(ordered) - 1, int(0.95 * (len(ordered) - 1)))],
"max": max(values),
}
def aggregate(rows: list[dict[str, Any]]) -> dict[str, Any]:
tv_values = [row["tv"] for row in rows]
brier_values = [row["brier_regret"] for row in rows]
accuracy_values = [1.0 if row["argmax_correct"] else 0.0 for row in rows]
return {
"n_predictions": len(rows),
"accuracy": statistics.fmean(accuracy_values) if accuracy_values else 0.0,
"pointwise_probability_fidelity": 1.0 - statistics.fmean(tv_values)
if tv_values
else 0.0,
"tv": summarize(tv_values),
"brier_regret": summarize(brier_values),
}
def evaluate(dataset_path: Path, predictions_path: Path, strict: bool) -> dict[str, Any]:
items = {row["instance_id"]: row for row in read_jsonl(dataset_path)}
prediction_rows = read_jsonl(predictions_path)
scored_rows = []
errors = []
for index, row in enumerate(prediction_rows, start=1):
instance_id = row.get("instance_id")
if instance_id not in items:
errors.append(f"prediction row {index}: unknown instance_id {instance_id!r}")
continue
item = items[instance_id]
try:
pred = extract_distribution(row, item)
except Exception as exc:
errors.append(f"prediction row {index}: {exc}")
continue
gold = {key: float(value) for key, value in item["gold_distribution"].items()}
outcomes = item["outcomes"]
tv = total_variation(gold, pred, outcomes)
scored_rows.append(
{
"group": prediction_group(row),
"instance_id": instance_id,
"latent_instance_id": item["latent_instance_id"],
"family": item["family"],
"representation": item["representation"],
"probability_band": item.get("probability_band"),
"tv": tv,
"pointwise_probability_fidelity": 1.0 - tv,
"brier_regret": brier_regret(gold, pred, outcomes),
"gold_argmax": item["gold_argmax"],
"predicted_argmax": argmax(pred),
"argmax_correct": argmax(gold) == argmax(pred),
}
)
covered = {row["instance_id"] for row in scored_rows}
missing = sorted(set(items) - covered)
if strict and (errors or missing):
for error in errors[:20]:
print(error, file=sys.stderr)
if len(errors) > 20:
print(f"... {len(errors) - 20} more prediction errors", file=sys.stderr)
if missing:
print(f"missing predictions for {len(missing)} dataset rows", file=sys.stderr)
raise SystemExit(1)
by_group = defaultdict(list)
by_family = defaultdict(list)
by_representation = defaultdict(list)
by_probability_band = defaultdict(list)
for row in scored_rows:
by_group[row["group"]].append(row)
by_family[(row["group"], row["family"])].append(row)
by_representation[(row["group"], row["representation"])].append(row)
by_probability_band[(row["group"], row["probability_band"])].append(row)
return {
"dataset_path": str(dataset_path),
"predictions_path": str(predictions_path),
"n_dataset_items": len(items),
"n_prediction_rows": len(prediction_rows),
"n_scored_rows": len(scored_rows),
"n_missing_items": len(missing),
"n_errors": len(errors),
"errors": errors,
"overall": aggregate(scored_rows),
"by_group": {str(key): aggregate(rows) for key, rows in sorted(by_group.items())},
"by_family": {
f"{key[0]} / {key[1]}": aggregate(rows)
for key, rows in sorted(by_family.items())
},
"by_representation": {
f"{key[0]} / {key[1]}": aggregate(rows)
for key, rows in sorted(by_representation.items())
},
"by_probability_band": {
f"{key[0]} / {key[1]}": aggregate(rows)
for key, rows in sorted(by_probability_band.items())
},
}
def main() -> None:
parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument(
"--dataset",
type=Path,
default=Path("data/v0.1.0_tiny_cleanvars_parallel_primitives.jsonl"),
help="Sys1Cal-v1 JSONL file.",
)
parser.add_argument("--predictions", type=Path, required=True, help="Prediction JSONL.")
parser.add_argument("--output", type=Path, help="Optional path for summary JSON.")
parser.add_argument(
"--strict",
action="store_true",
help="Fail on unknown instance IDs, malformed predictions, or missing items.",
)
args = parser.parse_args()
summary = evaluate(args.dataset, args.predictions, args.strict)
text = json.dumps(summary, indent=2, sort_keys=True)
if args.output:
args.output.parent.mkdir(parents=True, exist_ok=True)
args.output.write_text(text + "\n", encoding="utf-8")
print(text)
if __name__ == "__main__":
main()