Reduanul1997 commited on
Commit
a4eef67
·
verified ·
1 Parent(s): 1f09a07

Add processed OCTID dataset with 5 experimental splits

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
README.md ADDED
@@ -0,0 +1,116 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # OCTID Processed Dataset
2
+
3
+ Processed version of the OCTID retinal OCT dataset prepared for
4
+ research experiments comparing Swin Transformer architectures.
5
+
6
+ ## Dataset Summary
7
+
8
+ - Dataset: OCTID
9
+ - Total images: 572
10
+ - Number of classes: 5
11
+ - Image size: 224 x 224
12
+ - Image mode: RGB
13
+ - Image format: JPEG
14
+
15
+ ## Classes
16
+
17
+ | Class | Images |
18
+ |---|---:|
19
+ | Normal | 206 |
20
+ | AMD | 55 |
21
+ | CSR | 102 |
22
+ | DR | 107 |
23
+ | MH | 102 |
24
+ | Total | 572 |
25
+
26
+ ## Preprocessing
27
+
28
+ The preprocessing pipeline consists of:
29
+
30
+ 1. Aspect-ratio-preserving resize
31
+ 2. Center crop to 224 x 224
32
+ 3. Non-Local Means denoising
33
+ 4. CLAHE enhancement
34
+
35
+ ImageNet normalization is intentionally not stored in the images.
36
+ It will be applied during the PyTorch training pipeline.
37
+
38
+ ## Experimental Splits
39
+
40
+ Five repeated stratified splits are provided.
41
+
42
+ Each split contains approximately:
43
+
44
+ - 50% training
45
+ - 20% validation
46
+ - 30% testing
47
+
48
+ Seeds:
49
+
50
+ - 42
51
+ - 52
52
+ - 62
53
+ - 72
54
+ - 82
55
+
56
+ The same split files should be used when comparing different
57
+ models to ensure a fair experimental comparison.
58
+
59
+ ## Repository Structure
60
+
61
+ images/
62
+ splits/
63
+ metadata/
64
+ README.md
65
+
66
+ ## Intended Use
67
+
68
+ This processed dataset is intended for research experiments
69
+ involving retinal OCT image classification and comparison of
70
+ deep learning models, including Swin Transformer and custom
71
+ Swin Transformer architectures.
72
+
73
+ The provided split files should be used consistently across
74
+ models to maintain a fair comparison.
75
+
76
+ ## Image Preprocessing
77
+
78
+ The saved images have already undergone:
79
+
80
+ - Aspect-ratio-preserving resize
81
+ - Center crop
82
+ - Non-Local Means denoising
83
+ - CLAHE enhancement
84
+
85
+ ImageNet normalization is NOT included in the saved JPEG files.
86
+
87
+ For model training, ImageNet normalization should be applied
88
+ after loading the image and converting it to a tensor.
89
+
90
+ ## Reproducibility
91
+
92
+ The repository includes five stratified train/validation/test
93
+ splits and the experiment configuration used during dataset
94
+ preparation.
95
+
96
+ These files are provided so that the same experimental partitions
97
+ can be reused across different models.
98
+
99
+ ## Dataset Integrity
100
+
101
+ - Original images checked: 572
102
+ - Corrupted original images: 0
103
+ - Original duplicate files: 0
104
+ - Processed images: 572
105
+ - Missing processed images: 0
106
+ - Processed duplicate files: 0
107
+ - Processed image size: 224 x 224
108
+ - Processed image mode: RGB
109
+
110
+ ## License and Citation
111
+
112
+ This repository contains processed research data derived from OCTID.
113
+
114
+ Please consult the original OCTID dataset/source for its licensing,
115
+ citation requirements, and redistribution conditions before using
116
+ or publishing this dataset.
images/AMD/AMRD1.jpeg ADDED

Git LFS Details

  • SHA256: d7a9dd2bc20a0c5cfc63dc7f42a783fe3e9df975be19565b93dac641434ade3c
  • Pointer size: 129 Bytes
  • Size of remote file: 9.3 kB
images/AMD/AMRD10.jpeg ADDED

Git LFS Details

  • SHA256: c2fdb67ad423745c4493c4ae5ec3d4a699841ba3cfec6b2ac7fcef6b5db3c011
  • Pointer size: 129 Bytes
  • Size of remote file: 9.9 kB
images/AMD/AMRD11.jpeg ADDED

Git LFS Details

  • SHA256: fa47bd06581d3f80eced2f4bb8381b9412b1d228d9af9c0fb59a77e45bbe629f
  • Pointer size: 129 Bytes
  • Size of remote file: 9.05 kB
images/AMD/AMRD12.jpeg ADDED

Git LFS Details

  • SHA256: ba33918be9467cc2fa6130b9c737edc78d36cdac2931bcaecf8322a3a9dd4c01
  • Pointer size: 129 Bytes
  • Size of remote file: 9.5 kB
images/AMD/AMRD13.jpeg ADDED

Git LFS Details

  • SHA256: 4ba9d57fba7f86a095cb81244ee3a1cfc0e0ef2ae914ec4d113113a4a393cad2
  • Pointer size: 130 Bytes
  • Size of remote file: 10.5 kB
images/AMD/AMRD14.jpeg ADDED

Git LFS Details

  • SHA256: 29c167d44a262202e7e6a2bc1895ecc5317040b1f3e71555fbd8b11f31a830a4
  • Pointer size: 130 Bytes
  • Size of remote file: 10.3 kB
images/AMD/AMRD15.jpeg ADDED

Git LFS Details

  • SHA256: 32a82979b6dfd07fbb06b687be9da24bd38f3e897bdfcc1374ecd532a5e483e0
  • Pointer size: 129 Bytes
  • Size of remote file: 8.88 kB
images/AMD/AMRD16.jpeg ADDED

Git LFS Details

  • SHA256: 0497295639e575382d4aa4c2336a39c0218d3e08e4f9f1d33fccd523f8507165
  • Pointer size: 129 Bytes
  • Size of remote file: 8.78 kB
images/AMD/AMRD17.jpeg ADDED

Git LFS Details

  • SHA256: 98961db3401b9bfef661c9e88eba1d12618148d982ae7e0a11995bf5a3500836
  • Pointer size: 130 Bytes
  • Size of remote file: 12.9 kB
images/AMD/AMRD18.jpeg ADDED

Git LFS Details

  • SHA256: 2553f2437298c740847a43c559fddcc8dd5c582d222290989da79d97be0f3b86
  • Pointer size: 130 Bytes
  • Size of remote file: 11.5 kB
images/AMD/AMRD19.jpeg ADDED

Git LFS Details

  • SHA256: 2392043346d32f6aa8541bbf4a0b2bde181ce527ba7dff4876e5f5dadb03fa13
  • Pointer size: 129 Bytes
  • Size of remote file: 9.22 kB
images/AMD/AMRD2.jpeg ADDED

Git LFS Details

  • SHA256: 4028d5932103aefa45f5691822aec35d08f285be4246d17b22a15459c7fbb289
  • Pointer size: 129 Bytes
  • Size of remote file: 8.71 kB
images/AMD/AMRD20.jpeg ADDED

Git LFS Details

  • SHA256: 191a4082e958553de4621596a76b1ecd8def6e095a491cf86f010524649653c7
  • Pointer size: 129 Bytes
  • Size of remote file: 8.68 kB
images/AMD/AMRD21.jpeg ADDED

Git LFS Details

  • SHA256: 11647d663c6721462d218acc84535be53c1ca45ad6033fd3acb2974ec39da7d0
  • Pointer size: 130 Bytes
  • Size of remote file: 10.3 kB
images/AMD/AMRD22.jpeg ADDED

Git LFS Details

  • SHA256: 66079b7b24fe46c43f458614422f6555c8383c55a35e799c0e145359dc3833e2
  • Pointer size: 129 Bytes
  • Size of remote file: 9.96 kB
images/AMD/AMRD23.jpeg ADDED

Git LFS Details

  • SHA256: b4b83563c24fc815f5d179b857d7d95fb406ddf4dfb603a31f617ca21cc82b67
  • Pointer size: 129 Bytes
  • Size of remote file: 9.53 kB
images/AMD/AMRD24.jpeg ADDED

Git LFS Details

  • SHA256: 7bddea212e1b484d30e9633ef087a0680bd0358eaab1cbbf395285df102c5c1c
  • Pointer size: 129 Bytes
  • Size of remote file: 8.96 kB
images/AMD/AMRD25.jpeg ADDED

Git LFS Details

  • SHA256: d2d9a8cc543a8d8c6782354be67456c3d5f9fcb5f072f27a0b1e43c2c5778dfa
  • Pointer size: 129 Bytes
  • Size of remote file: 9.46 kB
images/AMD/AMRD26.jpeg ADDED

Git LFS Details

  • SHA256: d293fbc44564fc484a9f09929d777377c64546a73d26beb16686e50258e581ff
  • Pointer size: 129 Bytes
  • Size of remote file: 9.94 kB
images/AMD/AMRD27.jpeg ADDED

Git LFS Details

  • SHA256: b897f9a5a8f2d9dc93450cfe01835627789f4547d5ecf700035cf06e23789e29
  • Pointer size: 129 Bytes
  • Size of remote file: 9.86 kB
images/AMD/AMRD28.jpeg ADDED

Git LFS Details

  • SHA256: e52731e848626eeb41f47f4ccc76dc80d6fe4070945f9e3d115a304ca4c7f8e1
  • Pointer size: 129 Bytes
  • Size of remote file: 8.51 kB
images/AMD/AMRD29.jpeg ADDED

Git LFS Details

  • SHA256: 7312c01e8b9cb62f7ca3e0bbf6cd27336312362dbea2ae829d2454827971efdd
  • Pointer size: 129 Bytes
  • Size of remote file: 9.73 kB
images/AMD/AMRD3.jpeg ADDED

Git LFS Details

  • SHA256: 64adc4c479f95841195f88fad2fb3df42e4dd8a490a4e075659377a822f0f77f
  • Pointer size: 130 Bytes
  • Size of remote file: 10.1 kB
images/AMD/AMRD30.jpeg ADDED

Git LFS Details

  • SHA256: 2f5043439b9cb5a92586b4c0b6c2d960a8eccd97367b052c47d9f936af0c167e
  • Pointer size: 129 Bytes
  • Size of remote file: 9.27 kB
images/AMD/AMRD31.jpeg ADDED

Git LFS Details

  • SHA256: 2a6037f9e00c0945a88996e2253df8ab0431ed1c58739792bbedb2761f23d603
  • Pointer size: 129 Bytes
  • Size of remote file: 8.7 kB
images/AMD/AMRD32.jpeg ADDED

Git LFS Details

  • SHA256: 9b6e2e22be7ab2d3b2ed3cf03cc7a1cb9cc0a01cc1a6c763e0ec72d3ed7ec38f
  • Pointer size: 129 Bytes
  • Size of remote file: 8.42 kB
images/AMD/AMRD33.jpeg ADDED

Git LFS Details

  • SHA256: c2a56455bd8878ad266254691f4433aa521453551c795d094d55bf1d1f09a304
  • Pointer size: 129 Bytes
  • Size of remote file: 9.47 kB
images/AMD/AMRD34.jpeg ADDED

Git LFS Details

  • SHA256: 77b8c9608802c4a2f5a67bf49f5140fb9ac3415851119549390dffc19e9e40f3
  • Pointer size: 129 Bytes
  • Size of remote file: 9.54 kB
images/AMD/AMRD35.jpeg ADDED

Git LFS Details

  • SHA256: ad7e561bfdd7b5775f4a4fb97de33e5462c41f156ac299b0ecf6967ba9c6713b
  • Pointer size: 129 Bytes
  • Size of remote file: 8.94 kB
images/AMD/AMRD36.jpeg ADDED

Git LFS Details

  • SHA256: fdeec8486dbaec0688ba9328d2337af6645f046a123764179baa4ba35352489b
  • Pointer size: 129 Bytes
  • Size of remote file: 8.61 kB
images/AMD/AMRD37.jpeg ADDED

Git LFS Details

  • SHA256: fb6f9060772440b68fb2ab3edf94f5a875b3513f1707c2573d8c1365bd07365e
  • Pointer size: 129 Bytes
  • Size of remote file: 9.42 kB
images/AMD/AMRD38.jpeg ADDED

Git LFS Details

  • SHA256: eb6b48506dcc37cc28980c8c20a717932f37317d33dc9406b9fc92341acf2dcb
  • Pointer size: 129 Bytes
  • Size of remote file: 9.95 kB
images/AMD/AMRD39.jpeg ADDED

Git LFS Details

  • SHA256: 2355f5842f8f29164bb5985bce1e6e9727935cd1cb682b980b45e6d29bb924cc
  • Pointer size: 129 Bytes
  • Size of remote file: 9.19 kB
images/AMD/AMRD4.jpeg ADDED

Git LFS Details

  • SHA256: 69ac5df2a6585ab21bde61c04b66ac563a303f344b40c31d0f868aa8b0fd87dc
  • Pointer size: 130 Bytes
  • Size of remote file: 11.4 kB
images/AMD/AMRD40.jpeg ADDED

Git LFS Details

  • SHA256: 9a2c11a5270c58be66007243c1285f3ce00f64c1685f5ad3f8e617e05d607fcc
  • Pointer size: 129 Bytes
  • Size of remote file: 8.87 kB
images/AMD/AMRD41.jpeg ADDED

Git LFS Details

  • SHA256: 59db8b93f5b84b7f0bbb77451cbf24b47acab161c9543ac61766f60eee4005d1
  • Pointer size: 129 Bytes
  • Size of remote file: 8.77 kB
images/AMD/AMRD42.jpeg ADDED

Git LFS Details

  • SHA256: 25e8f23e4bb3023b5b41f676ac2eea0b89f36d63891a1b58e6702c6502553dbb
  • Pointer size: 129 Bytes
  • Size of remote file: 9.26 kB
images/AMD/AMRD43.jpeg ADDED

Git LFS Details

  • SHA256: f9224ddb1f21a7560eab95cf560e678d9b0ee0871e968c3ab6b90906411289c8
  • Pointer size: 130 Bytes
  • Size of remote file: 10.7 kB
images/AMD/AMRD44.jpeg ADDED

Git LFS Details

  • SHA256: 03d8ca5381bade217cc8fc3071f70df450263388840168e68967d171bb6b0364
  • Pointer size: 129 Bytes
  • Size of remote file: 9.54 kB
images/AMD/AMRD45.jpeg ADDED

Git LFS Details

  • SHA256: d54d08d0e2e7b2e4435de3e826a1a55720694d9c2a3a9a22c47a2d365658ce63
  • Pointer size: 129 Bytes
  • Size of remote file: 9.25 kB
images/AMD/AMRD46.jpeg ADDED

Git LFS Details

  • SHA256: 37b7be074aba8731df0df788f5a0ecb638b378aa32958818c88bf97fb76d88b6
  • Pointer size: 130 Bytes
  • Size of remote file: 10.2 kB
images/AMD/AMRD47.jpeg ADDED

Git LFS Details

  • SHA256: 9fc59c5d8fc1d366b732a5b91a0b31665b3382631cce81a52f23f3d377a2edec
  • Pointer size: 129 Bytes
  • Size of remote file: 9.36 kB
images/AMD/AMRD48.jpeg ADDED

Git LFS Details

  • SHA256: 2ace16a3da88acfa0179fa66b203e96d934fcd03ae16dabfa80bf69ae3ee761c
  • Pointer size: 130 Bytes
  • Size of remote file: 11.2 kB
images/AMD/AMRD49.jpeg ADDED

Git LFS Details

  • SHA256: e5f9ee04dc6c54ee750701994676b741a7a58305ea10d505ce97fb6de7f44b89
  • Pointer size: 130 Bytes
  • Size of remote file: 10.4 kB
images/AMD/AMRD5.jpeg ADDED

Git LFS Details

  • SHA256: 411da50c5ea5b1da1006e30b68653d310b073d8563584a2a61f72db88187ce72
  • Pointer size: 130 Bytes
  • Size of remote file: 11.1 kB
images/AMD/AMRD50.jpeg ADDED

Git LFS Details

  • SHA256: 349576c8d075016dc71d16b68419dcb8beb0519cb2aef86274d0a52128fb8200
  • Pointer size: 129 Bytes
  • Size of remote file: 9.41 kB
images/AMD/AMRD51.jpeg ADDED

Git LFS Details

  • SHA256: e0293e90b9ad6f9b2a1e62ac96b29e824f89037165cdff22365987e32a13a1d7
  • Pointer size: 130 Bytes
  • Size of remote file: 10.2 kB
images/AMD/AMRD52.jpeg ADDED

Git LFS Details

  • SHA256: 818ad09163b51c3a09ccbeed98ee6f3e3dac98e932a1675072840ed9950d2ecf
  • Pointer size: 129 Bytes
  • Size of remote file: 9.16 kB
images/AMD/AMRD53.jpeg ADDED

Git LFS Details

  • SHA256: c88d44d68ded499d48f94e37726d1175a952848b6c3d41e9a16177cd08bd2ec5
  • Pointer size: 129 Bytes
  • Size of remote file: 9.56 kB