Guillermo Pinto commited on
Add 'with_full_clinical_metadata' configuration with full clinical metadata
Browse files- README.md +179 -0
- with_full_clinical_metadata/test-00000-of-00003.parquet +3 -0
- with_full_clinical_metadata/test-00001-of-00003.parquet +3 -0
- with_full_clinical_metadata/test-00002-of-00003.parquet +3 -0
- with_full_clinical_metadata/train-00000-of-00013.parquet +3 -0
- with_full_clinical_metadata/train-00001-of-00013.parquet +3 -0
- with_full_clinical_metadata/train-00002-of-00013.parquet +3 -0
- with_full_clinical_metadata/train-00003-of-00013.parquet +3 -0
- with_full_clinical_metadata/train-00004-of-00013.parquet +3 -0
- with_full_clinical_metadata/train-00005-of-00013.parquet +3 -0
- with_full_clinical_metadata/train-00006-of-00013.parquet +3 -0
- with_full_clinical_metadata/train-00007-of-00013.parquet +3 -0
- with_full_clinical_metadata/train-00008-of-00013.parquet +3 -0
- with_full_clinical_metadata/train-00009-of-00013.parquet +3 -0
- with_full_clinical_metadata/train-00010-of-00013.parquet +3 -0
- with_full_clinical_metadata/train-00011-of-00013.parquet +3 -0
- with_full_clinical_metadata/train-00012-of-00013.parquet +3 -0
- with_full_clinical_metadata/validation-00000-of-00003.parquet +3 -0
- with_full_clinical_metadata/validation-00001-of-00003.parquet +3 -0
- with_full_clinical_metadata/validation-00002-of-00003.parquet +3 -0
README.md
CHANGED
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@@ -45,6 +45,14 @@ configs:
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| 45 |
path: with_embeddings_and_segmentation_splitted/validation-*
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| 46 |
- split: test
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| 47 |
path: with_embeddings_and_segmentation_splitted/test-*
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- config_name: with_full_metadata
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data_files:
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- split: train
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@@ -210,6 +218,177 @@ dataset_info:
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num_examples: 1078
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| 211 |
download_size: 5401845078
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dataset_size: 9172336210.736
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| 213 |
- config_name: with_full_metadata
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| 214 |
features:
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| 215 |
- name: image
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| 45 |
path: with_embeddings_and_segmentation_splitted/validation-*
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| 46 |
- split: test
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| 47 |
path: with_embeddings_and_segmentation_splitted/test-*
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| 48 |
+
- config_name: with_full_clinical_metadata
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| 49 |
+
data_files:
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| 50 |
+
- split: train
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| 51 |
+
path: with_full_clinical_metadata/train-*
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| 52 |
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- split: validation
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| 53 |
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path: with_full_clinical_metadata/validation-*
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| 54 |
+
- split: test
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| 55 |
+
path: with_full_clinical_metadata/test-*
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| 56 |
- config_name: with_full_metadata
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| 57 |
data_files:
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| 58 |
- split: train
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| 218 |
num_examples: 1078
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| 219 |
download_size: 5401845078
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| 220 |
dataset_size: 9172336210.736
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| 221 |
+
- config_name: with_full_clinical_metadata
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| 222 |
+
features:
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| 223 |
+
- name: image
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| 224 |
+
dtype: image
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| 225 |
+
- name: label
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| 226 |
+
dtype:
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| 227 |
+
class_label:
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| 228 |
+
names:
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| 229 |
+
'0': benign
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| 230 |
+
'1': malignant
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| 231 |
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- name: text
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| 232 |
+
dtype: string
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| 233 |
+
- name: patient_id
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| 234 |
+
dtype: string
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| 235 |
+
- name: text_embedding
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| 236 |
+
list: float32
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| 237 |
+
- name: segmentation_mask
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| 238 |
+
list:
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| 239 |
+
list:
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| 240 |
+
list: uint8
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| 241 |
+
- name: protocol
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| 242 |
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dtype: string
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| 243 |
+
- name: view
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| 244 |
+
dtype:
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| 245 |
+
class_label:
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| 246 |
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names:
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| 247 |
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'0': Frontal
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| 248 |
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'1': Right 45°
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| 249 |
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'2': Right 90°
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| 250 |
+
'3': Left 45°
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| 251 |
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'4': Left 90°
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| 252 |
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'5': Unknown
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| 253 |
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- name: record
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| 254 |
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dtype: string
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| 255 |
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- name: role
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| 256 |
+
dtype: string
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| 257 |
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- name: age_current
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| 258 |
+
dtype: int64
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- name: age_at_visit
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+
dtype: int64
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- name: registration_date
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+
dtype: string
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- name: marital_status
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| 264 |
+
dtype:
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+
class_label:
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names:
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'0': Divorced
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'1': Married
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'2': Single
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'3': Widow
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- name: race
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dtype:
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class_label:
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names:
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'0': Asian
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'1': Black
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| 277 |
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'2': Indigenous
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'3': Mulatto
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'4': Multiracial
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'5': White
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| 281 |
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- name: visit_date
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| 282 |
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dtype: string
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| 283 |
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- name: complaints
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| 284 |
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dtype: string
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| 285 |
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- name: symptoms
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| 286 |
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dtype: string
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| 287 |
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- name: signs
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| 288 |
+
dtype: string
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| 289 |
+
- name: last_menstrual_period
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| 290 |
+
dtype: string
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| 291 |
+
- name: menopause
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| 292 |
+
dtype: string
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| 293 |
+
- name: menarche
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| 294 |
+
dtype: int64
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| 295 |
+
- name: eating_habits
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| 296 |
+
dtype:
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| 297 |
+
class_label:
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| 298 |
+
names:
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| 299 |
+
'0': '35.50'
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| 300 |
+
'1': High in fat
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| 301 |
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'2': Low in fat
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| 302 |
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'3': No fat
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| 303 |
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- name: cancer_family
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dtype: string
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+
- name: family_history
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dtype: string
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| 307 |
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- name: further_informations
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dtype: string
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- name: mammography
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dtype:
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| 311 |
+
class_label:
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| 312 |
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names:
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| 313 |
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'0': 'No'
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| 314 |
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'1': 'Yes'
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| 315 |
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- name: radiotherapy
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| 316 |
+
dtype:
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| 317 |
+
class_label:
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| 318 |
+
names:
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| 319 |
+
'0': 'No'
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| 320 |
+
'1': 'Yes'
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| 321 |
+
- name: plastic_surgery
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| 322 |
+
dtype:
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| 323 |
+
class_label:
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| 324 |
+
names:
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| 325 |
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'0': 'No'
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| 326 |
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'1': Yes, both breasts
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| 327 |
+
'2': Yes, left breast
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| 328 |
+
'3': Yes, right breast
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| 329 |
+
- name: prosthesis
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| 330 |
+
dtype:
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| 331 |
+
class_label:
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| 332 |
+
names:
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| 333 |
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'0': 'No'
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| 334 |
+
'1': Yes, both breasts
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| 335 |
+
'2': Yes, left breast
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| 336 |
+
'3': Yes, right breast
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| 337 |
+
- name: biopsy
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| 338 |
+
dtype:
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| 339 |
+
class_label:
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| 340 |
+
names:
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| 341 |
+
'0': 'No'
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| 342 |
+
'1': Yes, both breasts
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| 343 |
+
'2': Yes, left breast
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| 344 |
+
'3': Yes, right breast
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| 345 |
+
- name: use_of_hormone_replacement
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| 346 |
+
dtype:
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| 347 |
+
class_label:
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| 348 |
+
names:
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| 349 |
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'0': 'No'
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| 350 |
+
'1': 'Yes'
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| 351 |
+
- name: nipple_changes
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| 352 |
+
dtype:
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| 353 |
+
class_label:
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| 354 |
+
names:
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| 355 |
+
'0': Yes, both breasts
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| 356 |
+
'1': Yes, left breast
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| 357 |
+
'2': Yes, right breast
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| 358 |
+
- name: is_there_signal_of_wart_on_breast
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| 359 |
+
dtype:
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| 360 |
+
class_label:
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| 361 |
+
names:
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| 362 |
+
'0': 'No'
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| 363 |
+
'1': Yes, both breasts
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| 364 |
+
'2': Yes, left breast
|
| 365 |
+
'3': Yes, right breast
|
| 366 |
+
- name: medical_further_informations
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| 367 |
+
dtype: string
|
| 368 |
+
- name: body_temperature
|
| 369 |
+
dtype: float64
|
| 370 |
+
- name: protocol_smoked
|
| 371 |
+
dtype: string
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| 372 |
+
- name: protocol_drank_coffee
|
| 373 |
+
dtype: string
|
| 374 |
+
- name: protocol_consumed_alcohol
|
| 375 |
+
dtype: string
|
| 376 |
+
- name: protocol_physical_exercise
|
| 377 |
+
dtype: string
|
| 378 |
+
- name: protocol_put_some_pomade_deodorant_or_products_at_breasts_or_armpits_region
|
| 379 |
+
dtype: string
|
| 380 |
+
splits:
|
| 381 |
+
- name: train
|
| 382 |
+
num_bytes: 6413706670.128
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| 383 |
+
num_examples: 4992
|
| 384 |
+
- name: validation
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| 385 |
+
num_bytes: 1365720717.356
|
| 386 |
+
num_examples: 1063
|
| 387 |
+
- name: test
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| 388 |
+
num_bytes: 1385006096.848
|
| 389 |
+
num_examples: 1078
|
| 390 |
+
download_size: 5138311714
|
| 391 |
+
dataset_size: 9164433484.332
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| 392 |
- config_name: with_full_metadata
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| 393 |
features:
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| 394 |
- name: image
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with_full_clinical_metadata/test-00000-of-00003.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:65f97cb30c5120f361f908b0e5bac63ce025833be0412e5b68a997e25a14fee4
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+
size 237168473
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with_full_clinical_metadata/test-00001-of-00003.parquet
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version https://git-lfs.github.com/spec/v1
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size 257208188
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with_full_clinical_metadata/test-00002-of-00003.parquet
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version https://git-lfs.github.com/spec/v1
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+
size 278941642
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with_full_clinical_metadata/train-00000-of-00013.parquet
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version https://git-lfs.github.com/spec/v1
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size 262953568
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with_full_clinical_metadata/train-00001-of-00013.parquet
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version https://git-lfs.github.com/spec/v1
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size 254295609
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with_full_clinical_metadata/train-00002-of-00013.parquet
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version https://git-lfs.github.com/spec/v1
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size 261634997
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with_full_clinical_metadata/train-00003-of-00013.parquet
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version https://git-lfs.github.com/spec/v1
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size 279363175
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with_full_clinical_metadata/train-00004-of-00013.parquet
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version https://git-lfs.github.com/spec/v1
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size 273902752
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with_full_clinical_metadata/train-00005-of-00013.parquet
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version https://git-lfs.github.com/spec/v1
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size 261246274
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with_full_clinical_metadata/train-00006-of-00013.parquet
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version https://git-lfs.github.com/spec/v1
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size 254976956
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with_full_clinical_metadata/train-00007-of-00013.parquet
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version https://git-lfs.github.com/spec/v1
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size 279982125
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with_full_clinical_metadata/train-00008-of-00013.parquet
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version https://git-lfs.github.com/spec/v1
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size 308390581
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with_full_clinical_metadata/train-00009-of-00013.parquet
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