DR-256-backup / tools /build_medium_benchmark.py
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#!/usr/bin/env python3
"""Build a deterministic, evidence-conditioned DeepResearch medium benchmark.
Selection never uses model outputs. Every selected question has at least one
successfully fetched, non-QA-dump teacher-provenance document containing the
normalized gold answer. Questions are stratified by dataset difficulty,
teacher outcome, and how much work an independent original-query search needs
to surface the answer after QA-dump documents are blocked. The independently
retrieved evidence URL need not be the exact URL used by the teacher: exact-
content deduplication deliberately retains only one representative URL in FTS.
"""
from __future__ import annotations
import argparse
import hashlib
import json
import random
import re
import unicodedata
from collections import Counter, defaultdict
from functools import lru_cache
from pathlib import Path
from typing import Any
from urllib.parse import urlsplit
try:
from .common import read_jsonl, write_jsonl
from .corpus_db import connect, open_document, search
except ImportError: # direct script execution
from common import read_jsonl, write_jsonl
from corpus_db import connect, open_document, search
BENCHMARK_NAME = "deepresearch9k-medium-v1"
DEFAULT_SEED = 20260809
AGENT_VISIBLE_K = 12
# Exact quotas keyed by (difficulty, teacher_correct, retrieval bucket). The
# source has only five D2/teacher-failure questions whose answer is absent from
# the original-query top 20 before stricter filtering, so forcing every cell
# to be 50/50 is impossible. These quotas retain exact global 128/128 teacher
# balance and the desired difficulty/bucket marginals without oversampling a
# nonexistent cell.
CELL_QUOTAS = {
(1, False, "visible"): 24,
(1, True, "visible"): 8,
(1, False, "open"): 22,
(1, True, "open"): 6,
(1, False, "reformulate"): 2,
(1, True, "reformulate"): 2,
(2, False, "visible"): 20,
(2, True, "visible"): 36,
(2, False, "open"): 18,
(2, True, "open"): 46,
(2, False, "reformulate"): 2,
(2, True, "reformulate"): 6,
(3, False, "visible"): 4,
(3, True, "visible"): 4,
(3, False, "open"): 12,
(3, True, "open"): 8,
(3, False, "reformulate"): 24,
(3, True, "reformulate"): 12,
}
SUSPICIOUS_URL_MARKERS = (
"huggingface.co/datasets",
"honestybench",
"halueval",
"qapairs",
"musique",
"hotpotqa",
"hotpot_qa",
"triviaqa",
"natural_questions",
"strategyqa",
"2wikimultihopqa",
)
SHORT_COMMON_ANSWERS = {
"earth",
"false",
"home",
"magazine",
"no",
"plants",
"rock",
"true",
"yes",
}
def normalize(text: str) -> str:
decomposed = unicodedata.normalize("NFKD", text or "")
without_marks = "".join(
character for character in decomposed if not unicodedata.combining(character)
)
return re.sub(r"[^\w]+", " ", without_marks.casefold(), flags=re.UNICODE).strip()
def contains_answer(text: str, normalized_answer: str) -> bool:
return f" {normalized_answer} " in f" {normalize(text)} "
def answer_is_usable(answer: str) -> bool:
normalized = normalize(answer)
compact = normalized.replace(" ", "")
if not normalized or normalized in SHORT_COMMON_ANSWERS or "<q1>" in answer:
return False
if len(compact) < 4 or len(answer) > 120:
return False
# Very short single alphabetic tokens are especially prone to incidental
# matches in long pages. Four-digit years remain useful.
if " " not in normalized and normalized.isalpha() and len(normalized) < 6:
return False
return True
def sha256(path: Path) -> str:
digest = hashlib.sha256()
with path.open("rb") as handle:
for block in iter(lambda: handle.read(1024 * 1024), b""):
digest.update(block)
return digest.hexdigest()
def url_is_suspicious(url: str) -> bool:
lowered = url.casefold()
if any(marker in lowered for marker in SUSPICIOUS_URL_MARKERS):
return True
path = urlsplit(lowered).path
return path.endswith((".jsonl", ".parquet"))
def find_blocked_documents(connection) -> tuple[set[str], list[dict[str, str]]]:
blocked: set[str] = set()
details = []
for row in connection.execute(
"SELECT url_id, canonical_url, title, text FROM documents WHERE status='success'"
):
reason = None
if url_is_suspicious(row["canonical_url"]):
reason = "url_marker"
else:
lowered = row["text"].casefold()
question_fields = lowered.count('"question"') + lowered.count('"question":')
answer_fields = lowered.count('"answer"') + lowered.count('"answer":')
if question_fields >= 5 and answer_fields >= 5:
reason = "repeated_structured_qa"
if reason:
blocked.add(row["url_id"])
details.append(
{
"docid": row["url_id"],
"url": row["canonical_url"],
"title": row["title"],
"reason": reason,
}
)
return blocked, details
def load_provenance(connection) -> dict[str, list[str]]:
result: defaultdict[str, list[str]] = defaultdict(list)
for row in connection.execute(
"""
SELECT q.qid, d.url_id
FROM document_qids AS q JOIN documents AS d USING(url_id)
WHERE d.status='success'
"""
):
result[row["qid"]].append(row["url_id"])
return dict(result)
def target_cells() -> dict[tuple[int, bool, str], int]:
return dict(CELL_QUOTAS)
def main() -> None:
parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument("--database", type=Path, required=True)
parser.add_argument(
"--database-label",
type=Path,
help="persistent source path recorded when --database is a staged copy",
)
parser.add_argument("--data", type=Path, required=True)
parser.add_argument("--coverage", type=Path, required=True)
parser.add_argument("--output-dir", type=Path, required=True)
parser.add_argument("--seed", type=int, default=DEFAULT_SEED)
args = parser.parse_args()
records = read_jsonl(args.data)
coverage = {row["qid"]: row for row in read_jsonl(args.coverage)}
connection = connect(args.database, readonly=True)
blocked_docids, blocked_details = find_blocked_documents(connection)
provenance = load_provenance(connection)
@lru_cache(maxsize=32768)
def document(docid: str) -> dict[str, Any] | None:
return open_document(connection, docid=docid)
candidates = []
rejected = Counter()
for record in records:
metadata = record.get("metadata") or {}
qid = metadata.get("manifest_qid") or metadata.get("qid")
audit = coverage.get(qid)
answer = metadata.get("answer") or record.get("label", "")
if audit is None or not audit.get("answer_in_fetched_provenance"):
rejected["audit_no_provenance_answer"] += 1
continue
if not answer_is_usable(answer):
rejected["unusable_answer"] += 1
continue
candidates.append(record)
rng = random.Random(args.seed)
rng.shuffle(candidates)
coarse_base_counts = Counter(
(int(record["metadata"]["difficulty"]), bool(record["metadata"]["teacher_correct"]))
for record in candidates
)
# Stable sort after shuffling: prioritize rare strata while preserving a
# seeded random order within each stratum. This changes no eligibility or
# quota; it avoids thousands of unnecessary FTS queries while waiting for
# a rare D2/teacher-failure row to appear in a global random stream.
candidates.sort(
key=lambda record: coarse_base_counts[
(
int(record["metadata"]["difficulty"]),
bool(record["metadata"]["teacher_correct"]),
)
]
)
quotas = target_cells()
selected_by_cell: defaultdict[tuple[int, bool, str], list[dict[str, Any]]] = defaultdict(list)
scanned = 0
for record in candidates:
if all(len(selected_by_cell[cell]) >= quota for cell, quota in quotas.items()):
break
scanned += 1
metadata = record["metadata"]
qid = metadata.get("manifest_qid") or metadata["qid"]
audit = coverage[qid]
difficulty = int(metadata["difficulty"])
teacher_correct = bool(metadata["teacher_correct"])
base_cells = [
(difficulty, teacher_correct, bucket)
for bucket in ("visible", "open", "reformulate")
]
if all(len(selected_by_cell[cell]) >= quotas[cell] for cell in base_cells):
rejected[f"base_quota_full:{difficulty}/{teacher_correct}"] += 1
continue
# The earlier audit used a superset of this benchmark's visible
# results (top 20, before blocking QA dumps). A miss there is
# guaranteed to remain a reformulation case here and need not repeat
# an expensive FTS query.
audit_retrieval_miss = not bool(audit["answer_in_question_search_top_20"])
reformulate_cell = (difficulty, teacher_correct, "reformulate")
if (
audit_retrieval_miss
and len(selected_by_cell[reformulate_cell]) >= quotas[reformulate_cell]
):
rejected[f"reformulate_quota_full:{difficulty}/{teacher_correct}"] += 1
continue
answer = metadata.get("answer") or record.get("label", "")
normalized_answer = normalize(answer)
clean_provenance_hits = []
for docid in provenance.get(qid, []):
if docid in blocked_docids:
continue
page = document(docid)
if page and contains_answer(page["text"], normalized_answer):
clean_provenance_hits.append(docid)
if not clean_provenance_hits:
rejected["no_clean_provenance_answer"] += 1
continue
if audit_retrieval_miss:
bucket = "reformulate"
evidence_rank, evidence_row = None, None
else:
try:
visible = search(
connection,
metadata["question"],
AGENT_VISIBLE_K,
excluded_docids=blocked_docids,
)
except ValueError:
rejected["unsearchable_question"] += 1
continue
snippet_matches = [
(rank, row)
for rank, row in enumerate(visible, 1)
if contains_answer(row["text"], normalized_answer)
]
full_matches = []
if not snippet_matches:
for rank, row in enumerate(visible, 1):
page = document(row["docid"])
if page and contains_answer(page["text"], normalized_answer):
full_matches.append((rank, row))
if snippet_matches:
bucket = "visible"
evidence_rank, evidence_row = snippet_matches[0]
elif full_matches:
bucket = "open"
evidence_rank, evidence_row = full_matches[0]
else:
bucket = "reformulate"
evidence_rank, evidence_row = None, None
cell = (int(metadata["difficulty"]), bool(metadata["teacher_correct"]), bucket)
if cell not in quotas or len(selected_by_cell[cell]) >= quotas[cell]:
rejected[f"quota_full:{cell}"] += 1
continue
enriched = json.loads(json.dumps(record, ensure_ascii=False))
enriched["metadata"]["benchmark"] = {
"name": BENCHMARK_NAME,
"selection_bucket": bucket,
"clean_provenance_answer_docids": sorted(clean_provenance_hits),
"original_query_evidence_rank": evidence_rank,
"original_query_evidence_docid": evidence_row["docid"] if evidence_row else None,
}
selected_by_cell[cell].append(enriched)
if len(selected_by_cell[cell]) == quotas[cell] or scanned % 100 == 0:
print(
f"scanned={scanned} selected={sum(map(len, selected_by_cell.values()))} "
f"filled={sum(len(selected_by_cell[c]) >= q for c, q in quotas.items())}/{len(quotas)}",
flush=True,
)
missing = {
str(cell): quota - len(selected_by_cell[cell])
for cell, quota in quotas.items()
if len(selected_by_cell[cell]) < quota
}
if missing:
raise RuntimeError(f"could not fill benchmark quotas after scanning {scanned}: {missing}")
selected = [row for cell in sorted(selected_by_cell, key=str) for row in selected_by_cell[cell]]
rng.shuffle(selected)
for index, row in enumerate(selected):
row["metadata"]["benchmark"]["index"] = index
args.output_dir.mkdir(parents=True, exist_ok=True)
questions_path = args.output_dir / "questions.jsonl"
blocked_docids_path = args.output_dir / "blocked_docids.txt"
write_jsonl(questions_path, selected)
write_jsonl(args.output_dir / "blocked_documents.jsonl", blocked_details)
blocked_docids_path.write_text(
"".join(f"{docid}\n" for docid in sorted(blocked_docids))
)
by_difficulty = Counter(row["metadata"]["difficulty"] for row in selected)
by_teacher = Counter(str(row["metadata"]["teacher_correct"]).lower() for row in selected)
by_bucket = Counter(
row["metadata"]["benchmark"]["selection_bucket"] for row in selected
)
summary = {
"benchmark": BENCHMARK_NAME,
"seed": args.seed,
"questions": len(selected),
"source_data": str(args.data),
"source_coverage": str(args.coverage),
"database": str(args.database_label or args.database),
"database_sha256": sha256(args.database),
"questions_sha256": sha256(questions_path),
"blocked_docids_sha256": sha256(blocked_docids_path),
"search_k": AGENT_VISIBLE_K,
"agent_visible_k": AGENT_VISIBLE_K,
"blocked_documents": len(blocked_docids),
"candidates_after_coarse_filter": len(candidates),
"coarse_candidates_by_difficulty_teacher": {
f"D{difficulty}/teacher_{str(teacher).lower()}": count
for (difficulty, teacher), count in sorted(coarse_base_counts.items())
},
"candidates_scanned": scanned,
"by_difficulty": dict(sorted(by_difficulty.items())),
"by_teacher_correct": dict(sorted(by_teacher.items())),
"by_selection_bucket": dict(sorted(by_bucket.items())),
"rejected": dict(rejected.most_common()),
"selection_note": (
"Evidence-conditioned diagnostic; model outputs were not used for selection. "
"Not a clean held-out estimate because train questions and train-trajectory provenance are allowed."
),
}
(args.output_dir / "summary.json").write_text(
json.dumps(summary, ensure_ascii=False, indent=2, sort_keys=True) + "\n"
)
connection.close()
print(json.dumps(summary, ensure_ascii=False, sort_keys=True))
if __name__ == "__main__":
main()