repo stringclasses 1k
values | file_url stringlengths 96 373 | file_path stringlengths 11 294 | content stringlengths 0 32.8k | language stringclasses 1
value | license stringclasses 6
values | commit_sha stringclasses 1k
values | retrieved_at stringdate 2026-01-04 14:45:56 2026-01-04 18:30:23 | truncated bool 2
classes |
|---|---|---|---|---|---|---|---|---|
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/overlapping/TestLoading.java | src/test/java/uk/ac/ox/krr/logmap2/test/overlapping/TestLoading.java | /*******************************************************************************
* Copyright 2017 by the Department of Informatics (University of Oslo)
*
* This file is part of the Ontology Services Toolkit
*
*******************************************************************************/
package uk.ac.ox.krr... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/overlapping/AbstractTestDivisionAlignmentTask.java | src/test/java/uk/ac/ox/krr/logmap2/test/overlapping/AbstractTestDivisionAlignmentTask.java | package uk.ac.ox.krr.logmap2.test.overlapping;
import java.io.File;
import java.util.Collections;
import java.util.HashSet;
import java.util.Set;
import org.semanticweb.owlapi.io.IRIDocumentSource;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.MissingImportHandlingStrategy;
import org.s... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/CreateModulesForBioMLTrack.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/CreateModulesForBioMLTrack.java | package uk.ac.ox.krr.logmap2.test.oaei;
import java.util.Calendar;
import java.util.HashSet;
import java.util.Set;
import org.semanticweb.owlapi.formats.RDFXMLDocumentFormat;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.OWLAnnotation;
import org.semanticweb.owlapi.model.OWLAnnotationAs... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioDiversityTrack.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioDiversityTrack.java | /*******************************************************************************
* Copyright 2018 by The Alan Turing Institute
*
*******************************************************************************/
package uk.ac.ox.krr.logmap2.test.oaei;
/**
*
* @author ernesto
* Created on 6 Sep 2018
*
*/
public ... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioML_SNOMED_NCIT_Pharma.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioML_SNOMED_NCIT_Pharma.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestBioML_SNOMED_NCIT_Pharma extends TestOAEITrack{
@Override
protected void setUp() {
SAVE_MAPPINGS = true;
//OUTPUT_FILE_TEMPLATE: will generate files logmap-alignment-food.owl, logmap-alignment-food.txt
//PATH = "/home/ernesto/Documents/Datasets/Food... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestAnatomyEnhanced.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestAnatomyEnhanced.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestAnatomyEnhanced extends TestOAEITrackEnhanced{
public TestAnatomyEnhanced(){
super();
}
@Override
protected void setUp() {
//Task specific details
String base_path = "C:/Users/Ernes/OneDrive/Documents/OAEI/anatomy/";
//String base_path = "C:... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioML_OMIM_ORDO.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioML_OMIM_ORDO.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestBioML_OMIM_ORDO extends TestOAEITrack{
@Override
protected void setUp() {
SAVE_MAPPINGS = true;
//OUTPUT_FILE_TEMPLATE: will generate files logmap-alignment-food.owl, logmap-alignment-food.txt
//PATH = "/home/ernesto/Documents/Datasets/Food/logmap-a... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioML_SNOMED_FMA_Body.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioML_SNOMED_FMA_Body.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestBioML_SNOMED_FMA_Body extends TestOAEITrack{
@Override
protected void setUp() {
SAVE_MAPPINGS = true;
//PATH = "C:/Users/Ernes/OneDrive/Documents/OAEI/bio-ml/snomed-fma.body/logmap/"; //path must exist
//String base_path = "C:/Users/Ernes/One... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestAnatomy.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestAnatomy.java | package uk.ac.ox.krr.logmap2.test.oaei;
import uk.ac.ox.krr.logmap2.Parameters;
public class TestAnatomy extends TestOAEITrack{
public TestAnatomy(){
super();
}
@Override
protected void setUp() {
Parameters.readParameters();
SAVE_MAPPINGS = true;
//String base_path = "/home/ernesto/Documents/O... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLogMapLt.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLogMapLt.java | package uk.ac.ox.krr.logmap2.test.oaei;
import uk.ac.ox.krr.logmap_lite.LogMap_Lite;
public class TestLogMapLt {
/**
* @param args
*/
public static void main(String[] args) {
String uri1;
String uri2;
String gs_mappings;
int ontos = 1;
if (ontos==1){
uri1= "file:/usr/local/data/DataUMLS... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestRDF2TXTMappings.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestRDF2TXTMappings.java | package uk.ac.ox.krr.logmap2.test.oaei;
import uk.ac.ox.krr.logmap2.io.OutPutFilesManager;
import uk.ac.ox.krr.logmap2.oaei.reader.MappingsReaderManager;
public class TestRDF2TXTMappings {
public TestRDF2TXTMappings(String input_file) throws Exception{
//1. Load mappings
MappingsReaderManager reader = new... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLargeBio_SNOMED_NCI.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLargeBio_SNOMED_NCI.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestLargeBio_SNOMED_NCI extends TestOAEITrack{
@Override
protected void setUp() {
SAVE_MAPPINGS = true;
//PATH = "C:/Users/Ernes/OneDrive/Documents/OAEI/largebio/snomed-nci/logmap/"; //path must exist
//String base_path = "C:/Users/Ernes/OneDr... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioML_SNOMED_NCIT_Neoplas.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioML_SNOMED_NCIT_Neoplas.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestBioML_SNOMED_NCIT_Neoplas extends TestOAEITrack{
@Override
protected void setUp() {
SAVE_MAPPINGS = true;
//OUTPUT_FILE_TEMPLATE: will generate files logmap-alignment-food.owl, logmap-alignment-food.txt
//PATH = "/home/ernesto/Documents/Datasets/Foo... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestAlignmentModule2025.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestAlignmentModule2025.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestAlignmentModule2025 extends TestOAEITrack{
@Override
protected void setUp() {
SAVE_MAPPINGS = true;
//OUTPUT_FILE_TEMPLATE: will generate files logmap-alignment-food.owl, logmap-alignment-food.txt
//PATH = "/home/ernesto/Documents/Datasets/Food/logm... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/Relation.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/Relation.java | package uk.ac.ox.krr.logmap2.test.oaei;
/**
* A Mapping Relation between two Ontology entities.
*
* @author Daniel Faria, Dominique Ritze
* Extracted from Extracted from eu.sealsproject.omt.client
*/
public enum Relation
{
EQUIVALENCE ("="),
SUBSUMES (">"),
SUBSUMED_BY ("<"),
UNKNOWN ("?");
... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/StandardMeasures.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/StandardMeasures.java | /*******************************************************************************
* Copyright 2017 by the Department of Informatics (University of Oslo)
*
* This file is part of the Ontology Services Toolkit
*
*******************************************************************************/
package uk.ac.ox.krr... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestPizza.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestPizza.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestPizza extends TestOAEITrack{
@Override
protected void setUp() {
SAVE_MAPPINGS = true;
//OUTPUT_FILE_TEMPLATE: will generate files logmap-alignment-food.owl, logmap-alignment-food.txt
//PATH = "/home/ernesto/Documents/Datasets/Food/logmap-alignm... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/HashAlignment.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/HashAlignment.java | package uk.ac.ox.krr.logmap2.test.oaei;
import java.util.HashMap;
import java.util.Set;
import java.util.Vector;
import uk.ac.ox.krr.logmap2.mappings.objects.MappingObjectStr;
/**
* A HashMap-based Alignment representation with enables virtually
* instantaneous searching for mappings, and linear-time Alignment
*... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLogMapBio.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLogMapBio.java | package uk.ac.ox.krr.logmap2.test.oaei;
import java.util.HashSet;
import java.util.Set;
import uk.ac.ox.krr.logmap2.LogMap2_OAEI_BioPortal;
import uk.ac.ox.krr.logmap2.mappings.objects.MappingObjectStr;
import uk.ac.ox.krr.logmap2.oaei.reader.RDFAlignReader;
public class TestLogMapBio {
private static void getPr... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestOAEITrack.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestOAEITrack.java | /*******************************************************************************
* Copyright 2018 by The Alan Turing Institute
*
*******************************************************************************/
package uk.ac.ox.krr.logmap2.test.oaei;
import java.net.MalformedURLException;
import java.net.URL;
impor... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestSnomedPunning.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestSnomedPunning.java | package uk.ac.ox.krr.logmap2.test.oaei;
import java.util.HashSet;
import java.util.Set;
import org.semanticweb.owlapi.model.OWLClass;
import org.semanticweb.owlapi.model.OWLObjectProperty;
import org.semanticweb.owlapi.model.OWLOntologyCreationException;
import uk.ac.ox.krr.logmap2.OntologyLoader;
public class Test... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestTSVBioML2RDFMappings.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestTSVBioML2RDFMappings.java | package uk.ac.ox.krr.logmap2.test.oaei;
import uk.ac.ox.krr.logmap2.io.OutPutFilesManager;
import uk.ac.ox.krr.logmap2.oaei.reader.MappingsReaderManager;
public class TestTSVBioML2RDFMappings {
public TestTSVBioML2RDFMappings(String input_file, String output_file, String iri1, String iri2) throws Exception{
... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLoadMappings.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLoadMappings.java | package uk.ac.ox.krr.logmap2.test.oaei;
import uk.ac.ox.krr.logmap2.oaei.reader.MappingsReaderManager;
public class TestLoadMappings {
public static void main (String[] args) {
MappingsReaderManager manager =
new MappingsReaderManager("/home/ernesto/Downloads/export_bao_ncit.rdf", MappingsReaderManage... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLogMapFull.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLogMapFull.java | package uk.ac.ox.krr.logmap2.test.oaei;
import uk.ac.ox.krr.logmap2.LogMap_Full;
import uk.ac.ox.krr.logmap2.io.LogOutput;
import uk.ac.ox.krr.logmap2.reasoning.ReasonerManager;
import uk.ac.ox.krr.logmap2.utilities.Utilities;
public class TestLogMapFull {
/**
* @param args
*/
public static void main(Str... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestKnowledgeGraphTrack2021.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestKnowledgeGraphTrack2021.java | package uk.ac.ox.krr.logmap2.test.oaei;
/**
*
* @author ernesto
* Created on 10 Oct 2021
*
*/
public class TestKnowledgeGraphTrack2021 extends TestOAEITrack{
TestKnowledgeGraphTrack2021(){
super();
}
protected void setUp(){
/*tasks.add(
new OAEITask(
"http://oaei.webdatacommons... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestFoodOntologies.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestFoodOntologies.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestFoodOntologies extends TestOAEITrack{
@Override
protected void setUp() {
SAVE_MAPPINGS = true;
//OUTPUT_FILE_TEMPLATE: will generate files logmap-alignment-food.owl, logmap-alignment-food.txt
//PATH = "/home/ernesto/Documents/Datasets/Food/logmap-al... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/CreateIIMBSEALS.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/CreateIIMBSEALS.java | /*******************************************************************************
* Copyright 2018 by The Alan Turing Institute
*
*******************************************************************************/
package uk.ac.ox.krr.logmap2.test.oaei;
import java.io.File;
import java.util.ArrayList;
import java.util... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestPistoiaPhase4.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestPistoiaPhase4.java | package uk.ac.ox.krr.logmap2.test.oaei;
import uk.ac.ox.krr.logmap2.Parameters;
public class TestPistoiaPhase4 extends TestOAEITrack{
public TestPistoiaPhase4(){
super();
}
@Override
protected void setUp() {
String uri_path_ontos = "file:/home/ernesto/Documents/BioPortal/Ontologies/";
String uri_p... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestKERGameTask.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestKERGameTask.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestKERGameTask extends TestOAEITrack{
@Override
protected void setUp() {
SAVE_MAPPINGS = true;
OUTPUT_FILE_TEMPLATE = "/home/ejimenez-ruiz/Documents/OAEI_2018/Tracks/KER-game-im/v2/logmap-game-v2-alignment";
String uri_path = "file:/home/ejimenez-rui... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestPhenotypeTrack.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestPhenotypeTrack.java | /*******************************************************************************
* Copyright 2018 by The Alan Turing Institute
*
*******************************************************************************/
package uk.ac.ox.krr.logmap2.test.oaei;
import uk.ac.ox.krr.logmap2.Parameters;
/**
*
* @author ernest... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestIIMBTrack.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestIIMBTrack.java | /*******************************************************************************
* Copyright 2018 by The Alan Turing Institute
*
*******************************************************************************/
package uk.ac.ox.krr.logmap2.test.oaei;
/**
*
* @author ernesto
* Created on 7 Sep 2018
*
*/
public ... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestIoT.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestIoT.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestIoT extends TestOAEITrack{
public TestIoT(){
super();
}
public TestIoT(String output_folder_mappings){
//super();
super(output_folder_mappings); //with partial output path to save mappings
}
@Override
protected void setUp() {
// TODO Auto... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestOAEITrackEnhanced.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestOAEITrackEnhanced.java | /*******************************************************************************
* Copyright 2025 by City St George's, University of London
*
*******************************************************************************/
package uk.ac.ox.krr.logmap2.test.oaei;
import java.net.MalformedURLException;
import java.n... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/OAEITask.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/OAEITask.java | /*******************************************************************************
* Copyright 2018 by The Alan Turing Institute
*
*******************************************************************************/
package uk.ac.ox.krr.logmap2.test.oaei;
/**
*
* @author ernesto
* Created on 6 Sep 2018
*
*/
public ... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLargeBio_FMA_SNOMED.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLargeBio_FMA_SNOMED.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestLargeBio_FMA_SNOMED extends TestOAEITrack{
@Override
protected void setUp() {
SAVE_MAPPINGS = true;
//PATH = "C:/Users/Ernes/OneDrive/Documents/OAEI/largebio/fma-snomed/logmap/"; //path must exist
//String base_path = "C:/Users/Ernes/OneDrive... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestNIVA.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestNIVA.java | package uk.ac.ox.krr.logmap2.test.oaei;
import uk.ac.ox.krr.logmap2.Parameters;
public class TestNIVA extends TestOAEITrack{
public TestNIVA(){
super();
Parameters.perform_instance_matching = true;
Parameters.output_instance_mappings = true;
Parameters.print_output=true;
Parameters.print_output_alw... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioMLRanking.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioMLRanking.java | package uk.ac.ox.krr.logmap2.test.oaei;
import java.util.HashSet;
import java.util.Iterator;
import java.util.Set;
import java.util.TreeSet;
import uk.ac.ox.krr.logmap2.LogMap2_MappingRanking;
import uk.ac.ox.krr.logmap2.OntologyLoader;
import uk.ac.ox.krr.logmap2.mappings.objects.MappingObjectStr;
public class Tes... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLargeBio_FMA_NCI.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestLargeBio_FMA_NCI.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestLargeBio_FMA_NCI extends TestOAEITrack{
@Override
protected void setUp() {
SAVE_MAPPINGS = true;
//PATH = "C:/Users/Ernes/OneDrive/Documents/OAEI/largebio/fma-nci/logmap/"; //path must exist
//String base_path = "C:/Users/Ernes/OneDrive/Do... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestConferenceTrack.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestConferenceTrack.java | package uk.ac.ox.krr.logmap2.test.oaei;
import java.io.File;
public class TestConferenceTrack extends TestOAEITrackEnhanced{
@Override
protected void setUp() {
//Task specific details
String base_path = "C:/Users/Ernes/OneDrive/Documents/OAEI/conference/";
String uri_base_path = "file:/" + base_path... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioML_NCIT_DOID.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestBioML_NCIT_DOID.java | package uk.ac.ox.krr.logmap2.test.oaei;
public class TestBioML_NCIT_DOID extends TestOAEITrack{
@Override
protected void setUp() {
SAVE_MAPPINGS = true;
//OUTPUT_FILE_TEMPLATE: will generate files logmap-alignment-food.owl, logmap-alignment-food.txt
//PATH = "/home/ernesto/Documents/Datasets/Food/logmap-a... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestKnowledgeGraphTrack2018.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/TestKnowledgeGraphTrack2018.java | /*******************************************************************************
* Copyright 2018 by The Alan Turing Institute
*
*******************************************************************************/
package uk.ac.ox.krr.logmap2.test.oaei;
/**
*
* @author ernesto
* Created on 6 Sep 2018
*
*/
public... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestBioML_OMIM_ORDO_WithLocalOracle.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestBioML_OMIM_ORDO_WithLocalOracle.java | package uk.ac.ox.krr.logmap2.test.oaei.interactivity;
import uk.ac.ox.krr.logmap2.test.oaei.OAEITask;
public class TestBioML_OMIM_ORDO_WithLocalOracle extends TestOAEITrackWithOracle{
protected void setUp(boolean extended_questions, boolean llm_oracle, int error_rate) {
setIputOutputFiles("bio-ml/om... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestOAEITrackWithOracle.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestOAEITrackWithOracle.java | /*******************************************************************************
* Copyright 2018 by The Alan Turing Institute
*
*******************************************************************************/
package uk.ac.ox.krr.logmap2.test.oaei.interactivity;
import java.net.MalformedURLException;
import java.... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestBioML_SNOMED_FMA_Body_WithLocalOracle.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestBioML_SNOMED_FMA_Body_WithLocalOracle.java | package uk.ac.ox.krr.logmap2.test.oaei.interactivity;
import uk.ac.ox.krr.logmap2.test.oaei.OAEITask;
public class TestBioML_SNOMED_FMA_Body_WithLocalOracle extends TestOAEITrackWithOracle{
protected void setUp(boolean extended_questions, boolean llm_oracle, int error_rate) {
setIputOutputFiles("bio-ml/snomed-... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestBioML_SNOMED_NCIT_Neoplas_WithLocalOracle.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestBioML_SNOMED_NCIT_Neoplas_WithLocalOracle.java | package uk.ac.ox.krr.logmap2.test.oaei.interactivity;
import uk.ac.ox.krr.logmap2.test.oaei.OAEITask;
public class TestBioML_SNOMED_NCIT_Neoplas_WithLocalOracle extends TestOAEITrackWithOracle{
protected void setUp(boolean extended_questions, boolean llm_oracle, int error_rate) {
setIputOutputFiles("bio-... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestAnatomyWithLocalOracle.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestAnatomyWithLocalOracle.java | package uk.ac.ox.krr.logmap2.test.oaei.interactivity;
import uk.ac.ox.krr.logmap2.test.oaei.OAEITask;
public class TestAnatomyWithLocalOracle extends TestOAEITrackWithOracle{
public TestAnatomyWithLocalOracle(){
super();
}
protected void setUp(boolean extended_questions, boolean llm_oracle, int error_rate)... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/PerformanceLogMapAutomaticDecisions.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/PerformanceLogMapAutomaticDecisions.java | package uk.ac.ox.krr.logmap2.test.oaei.interactivity;
import java.util.Set;
import uk.ac.ox.krr.logmap2.mappings.objects.MappingObjectStr;
import uk.ac.ox.krr.logmap2.oaei.reader.MappingsReaderManager;
/**
* THis class checks teh performance of how LogMap performs on the Mappings that it would ask to an oracle (e.g... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestLargeBio_FMA_NCI_WithLocalOracle.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestLargeBio_FMA_NCI_WithLocalOracle.java | package uk.ac.ox.krr.logmap2.test.oaei.interactivity;
import uk.ac.ox.krr.logmap2.test.oaei.OAEITask;
public class TestLargeBio_FMA_NCI_WithLocalOracle extends TestOAEITrackWithOracle{
protected void setUp(boolean extended_questions, boolean llm_oracle, int error_rate) {
setIputOutputFiles("largebio/fma-nci... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestLargeBio_SNOMED_NCI_WithLocalOracle.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestLargeBio_SNOMED_NCI_WithLocalOracle.java | package uk.ac.ox.krr.logmap2.test.oaei.interactivity;
import uk.ac.ox.krr.logmap2.test.oaei.OAEITask;
public class TestLargeBio_SNOMED_NCI_WithLocalOracle extends TestOAEITrackWithOracle{
protected void setUp(boolean extended_questions, boolean llm_oracle, int error_rate) {
setIputOutputFiles("largebio/sn... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/CorrectnessMappingsToAskOracle.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/CorrectnessMappingsToAskOracle.java | package uk.ac.ox.krr.logmap2.test.oaei.interactivity;
import java.util.Set;
import uk.ac.ox.krr.logmap2.mappings.objects.MappingObjectStr;
import uk.ac.ox.krr.logmap2.oaei.reader.MappingsReaderManager;
/**
* This class checks tthe number of correcnt (P) and incorrect (N) mappings in mappings to ask.
* Created in M... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestLargeBio_FMA_SNOMED_WithLocalOracle.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestLargeBio_FMA_SNOMED_WithLocalOracle.java | package uk.ac.ox.krr.logmap2.test.oaei.interactivity;
import uk.ac.ox.krr.logmap2.test.oaei.OAEITask;
public class TestLargeBio_FMA_SNOMED_WithLocalOracle extends TestOAEITrackWithOracle{
protected void setUp(boolean extended_questions, boolean llm_oracle, int error_rate) {
setIputOutputFiles("largebio/fma-... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestBioML_NCIT_DOID_WithLocalOracle.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestBioML_NCIT_DOID_WithLocalOracle.java | package uk.ac.ox.krr.logmap2.test.oaei.interactivity;
import uk.ac.ox.krr.logmap2.test.oaei.OAEITask;
public class TestBioML_NCIT_DOID_WithLocalOracle extends TestOAEITrackWithOracle{
protected void setUp(boolean extended_questions, boolean llm_oracle, int error_rate) {
setIputOutputFiles("bio-ml/ncit-doi... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestBioML_SNOMED_NCIT_Pharma_WithLocalOracle.java | src/test/java/uk/ac/ox/krr/logmap2/test/oaei/interactivity/TestBioML_SNOMED_NCIT_Pharma_WithLocalOracle.java | package uk.ac.ox.krr.logmap2.test.oaei.interactivity;
import uk.ac.ox.krr.logmap2.test.oaei.OAEITask;
public class TestBioML_SNOMED_NCIT_Pharma_WithLocalOracle extends TestOAEITrackWithOracle{
protected void setUp(boolean extended_questions, boolean llm_oracle, int error_rate) {
setIputOutputFiles("bio-ml/snomed... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/sem_tab/CEA_challenge_score.java | src/test/java/uk/ac/ox/krr/logmap2/test/sem_tab/CEA_challenge_score.java | package uk.ac.ox.krr.logmap2.test.sem_tab;
import java.io.FileReader;
import java.net.URL;
import com.opencsv.CSVReader;
import uk.ac.ox.krr.logmap2.io.OutPutFilesManager;
import uk.ac.ox.krr.logmap2.io.ReadFile;
import uk.ac.ox.krr.logmap2.oaei.reader.FlatAlignmentReader;
import uk.ac.ox.krr.logmap2.oaei.reader.RDF... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/test/java/uk/ac/ox/krr/logmap2/test/sem_tab/CEA_challenge.java | src/test/java/uk/ac/ox/krr/logmap2/test/sem_tab/CEA_challenge.java | package uk.ac.ox.krr.logmap2.test.sem_tab;
import java.io.File;
import java.io.FileReader;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/manchester/syntactic_locality/SyntacticLocalityChecker.java | src/main/java/uk/ac/manchester/syntactic_locality/SyntacticLocalityChecker.java | package uk.ac.manchester.syntactic_locality;
import java.util.Set;
import java.util.HashSet;
import java.util.Iterator;
import org.semanticweb.owlapi.apibinding.OWLManager;
import org.semanticweb.owlapi.model.*;
/**
* This class re-implements the syntactic locality checker, based on the codes from Bernardo Cuenca,... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | true |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/manchester/syntactic_locality/ModuleExtractor.java | src/main/java/uk/ac/manchester/syntactic_locality/ModuleExtractor.java | package uk.ac.manchester.syntactic_locality;
import java.net.URI;
import java.rmi.server.UID;
import java.util.ArrayList;
import java.util.Calendar;
import java.util.Collections;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
//import org.mindswap.pellet.utils.MultiValueMap;
import org.semant... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/manchester/syntactic_locality/OntologyModuleExtractor.java | src/main/java/uk/ac/manchester/syntactic_locality/OntologyModuleExtractor.java | package uk.ac.manchester.syntactic_locality;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.HashMap;
import java.util.List;
import java.util.Set;
import java.util.Map;
import org.semanticweb.owlapi.formats.RDFXMLDocumentFormat;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/manchester/syntactic_locality/ModuleExtractorManager.java | src/main/java/uk/ac/manchester/syntactic_locality/ModuleExtractorManager.java | package uk.ac.manchester.syntactic_locality;
import java.rmi.server.UID;
import java.util.ArrayList;
import java.util.Calendar;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
//import java.net.URI;
import org.semanticweb.owlapi.apibinding.OWLManager;
import org.semanticweb.owlapi.model.IRI;
i... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/manchester/syntactic_locality/utils/ExtractorConstants.java | src/main/java/uk/ac/manchester/syntactic_locality/utils/ExtractorConstants.java | package uk.ac.manchester.syntactic_locality.utils;
public class ExtractorConstants {
//DUAL CONCEPTS AND DUAL ROLES
public static final String LOWER_MODULE="LOWER_MODULE";
public static final String LM="LM";
//NON DUAL CONCEPTS AND NON DUAL ROLES
public static final String UPPER_MODULE="UPPER_MODULE";
public ... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/manchester/syntactic_locality/utils/ReadFile.java | src/main/java/uk/ac/manchester/syntactic_locality/utils/ReadFile.java | package uk.ac.manchester.syntactic_locality.utils;
import java.io.BufferedReader;
import java.io.File;
import java.io.FileReader;
import java.io.FileNotFoundException;
import java.io.IOException;
/**
* This program reads a text file line by line, using a BufferedReader
*
*/
public class ReadFile {
private Buf... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap_lite/OntologyLoader.java | src/main/java/uk/ac/ox/krr/logmap_lite/OntologyLoader.java | package uk.ac.ox.krr.logmap_lite;
import org.semanticweb.owlapi.formats.RDFXMLDocumentFormat;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.MissingImportHandlingStrategy;
import org.semanticweb.owlapi.model.OWLDataFactory;
import org.semanticweb.owlapi.model.OWLOntology;
import org.seman... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap_lite/PrecomputeIndexCombinationStatic.java | src/main/java/uk/ac/ox/krr/logmap_lite/PrecomputeIndexCombinationStatic.java | package uk.ac.ox.krr.logmap_lite;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
/**
* Static class: not recommended when using from web service
* This class will precompute and manage the index combination for:
* ... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap_lite/PrecomputeIndexCombination.java | src/main/java/uk/ac/ox/krr/logmap_lite/PrecomputeIndexCombination.java | package uk.ac.ox.krr.logmap_lite;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
/**
* This class will precompute and manage the index combination for:
* 1. Weak mappings (combination of words to be dropped)
* 2. ... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap_lite/OntologyProcessing.java | src/main/java/uk/ac/ox/krr/logmap_lite/OntologyProcessing.java | package uk.ac.ox.krr.logmap_lite;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom;
import org.semanticweb.owlapi.m... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | true |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap_lite/LogMap_Lite.java | src/main/java/uk/ac/ox/krr/logmap_lite/LogMap_Lite.java | package uk.ac.ox.krr.logmap_lite;
import java.net.URL;
import java.util.Calendar;
import java.util.HashSet;
import java.util.Set;
import java.util.HashMap;
import java.util.Map;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.OWLEntity;
import org.semanticweb.owlapi.model.OWLOntology... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap_lite/MappingObjectStr.java | src/main/java/uk/ac/ox/krr/logmap_lite/MappingObjectStr.java | package uk.ac.ox.krr.logmap_lite;
public class MappingObjectStr {
String Iri_ent1_str;
String Iri_ent2_str;
double confidence;
int sourceMapping; //0: exact, l1, l2, l3
public MappingObjectStr(String iri_ent1, String iri_ent2){
Iri_ent1_str=iri_ent1;
Iri_ent2_str=iri_ent2;
confidence=1.0;
sourc... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap_lite/io/OAEIAlignmentOutput.java | src/main/java/uk/ac/ox/krr/logmap_lite/io/OAEIAlignmentOutput.java | package uk.ac.ox.krr.logmap_lite.io;
import java.io.File;
import java.io.FileWriter;
import java.net.URL;
import uk.ac.ox.krr.logmap_lite.LogMap_Lite;
public class OAEIAlignmentOutput extends OutputMappingsFormat {
File alignmentFile;
FileWriter fw;
/**
* Same format than OAEIRDFAlignmentFormat, but wi... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap_lite/io/OWLAlignmentFormat.java | src/main/java/uk/ac/ox/krr/logmap_lite/io/OWLAlignmentFormat.java | package uk.ac.ox.krr.logmap_lite.io;
import java.util.ArrayList;
import java.util.List;
import org.semanticweb.owlapi.apibinding.OWLManager;
import org.semanticweb.owlapi.formats.RDFXMLDocumentFormat;
import org.semanticweb.owlapi.model.AddAxiom;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owl... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap_lite/io/WriteFile.java | src/main/java/uk/ac/ox/krr/logmap_lite/io/WriteFile.java | package uk.ac.ox.krr.logmap_lite.io;
import java.io.BufferedWriter;
//import java.io.File;
import java.io.FileWriter;
import java.io.File;
//import java.io.FileNotFoundException;
import java.io.IOException;
/**
* This program writes a text file line by line, using a BufferedWritter
*
*/
public class WriteFile {
... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap_lite/io/RDFAlignmentFormat.java | src/main/java/uk/ac/ox/krr/logmap_lite/io/RDFAlignmentFormat.java | package uk.ac.ox.krr.logmap_lite.io;
import uk.ac.ox.krr.logmap_lite.LogMap_Lite;
/**
* RDF Alignment format
*
*
* @author Ernesto Jimenez-Ruiz
* Created: Sep 11, 2011
*
*/
public class RDFAlignmentFormat extends OutputMappingsFormat {
WriteFile writer;
public RDFAlignmentFormat(String output_file_str... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap_lite/io/ReadFile.java | src/main/java/uk/ac/ox/krr/logmap_lite/io/ReadFile.java | package uk.ac.ox.krr.logmap_lite.io;
import java.io.BufferedReader;
import java.io.File;
import java.io.FileReader;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.io.InputStreamReader;
import java.io.InputStream;
/**
* This program reads a text file line by line, using a BufferedRea... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap_lite/io/OutputMappingsFormat.java | src/main/java/uk/ac/ox/krr/logmap_lite/io/OutputMappingsFormat.java | package uk.ac.ox.krr.logmap_lite.io;
public abstract class OutputMappingsFormat {
protected String output_file;
protected OutputMappingsFormat(String output_file_str){
output_file=output_file_str;
}
protected abstract void setOutput() throws Exception;
protected abstract void addClassMappin... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/Parameters.java | src/main/java/uk/ac/ox/krr/logmap2/Parameters.java | package uk.ac.ox.krr.logmap2;
import uk.ac.ox.krr.logmap2.io.ReadFile;
import uk.ac.ox.krr.logmap2.multilingual.TranslatorManager;
import java.util.Set;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.util.HashSet;
import java.io.File;
public class Parameters {
private static final Logger L... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/LogMap2_OAEI_BioPortal.java | src/main/java/uk/ac/ox/krr/logmap2/LogMap2_OAEI_BioPortal.java | package uk.ac.ox.krr.logmap2;
import java.net.URL;
import java.util.Calendar;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Map;
import java.util.Set;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.MissingImportHandlingStrategy;
import org.semanticweb.owlapi.model... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/OntologyLoader.java | src/main/java/uk/ac/ox/krr/logmap2/OntologyLoader.java | package uk.ac.ox.krr.logmap2;
//import org.semanticweb.owlapi.apibinding.OWLManager;
import org.semanticweb.owlapi.formats.RDFXMLDocumentFormat;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.MissingImportHandlingStrategy;
import org.semanticweb.owlapi.model.OWLDataFactory;
import org.se... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/LogMap2_Matcher.java | src/main/java/uk/ac/ox/krr/logmap2/LogMap2_Matcher.java | package uk.ac.ox.krr.logmap2;
import java.util.Set;
import java.util.HashSet;
import java.util.List;
import java.util.ArrayList;
import uk.ac.ox.krr.logmap2.interactive.objects.MappingObjectInteractivity;
import uk.ac.ox.krr.logmap2.io.FlatAlignmentFormat;
import uk.ac.ox.krr.logmap2.io.OutPutFilesManagerStatic;
imp... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/LogMap2_RepairFacility.java | src/main/java/uk/ac/ox/krr/logmap2/LogMap2_RepairFacility.java | package uk.ac.ox.krr.logmap2;
import uk.ac.ox.krr.logmap2.indexing.JointIndexManager;
import uk.ac.ox.krr.logmap2.oaei.reader.MappingsReaderManager;
import uk.ac.ox.krr.logmap2.indexing.OntologyProcessing;
import uk.ac.ox.krr.logmap2.io.LogOutput;
import uk.ac.ox.krr.logmap2.io.OWLAlignmentFormat;
import uk.ac.ox.krr... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | true |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/LogMapLLM_Interface.java | src/main/java/uk/ac/ox/krr/logmap2/LogMapLLM_Interface.java | package uk.ac.ox.krr.logmap2;
import java.io.File;
import java.util.Set;
import uk.ac.ox.krr.logmap2.mappings.objects.MappingObjectStr;
import uk.ac.ox.krr.logmap2.oaei.oracle.LocalOracle;
import uk.ac.ox.krr.logmap2.oaei.oracle.OracleManager;
/**
*
*/
public class LogMapLLM_Interface {
String onto_uri1;
Str... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/LogMap2_OAEI.java | src/main/java/uk/ac/ox/krr/logmap2/LogMap2_OAEI.java | package uk.ac.ox.krr.logmap2;
import java.net.URL;
import java.util.Calendar;
import uk.ac.ox.krr.logmap2.oaei.oracle.OracleManager;
import uk.ac.ox.krr.logmap2.utilities.Utilities;
import uk.ac.ox.krr.logmap2.io.LogOutput;
import uk.ac.ox.krr.logmap2.io.OAEIAlignmentOutput;
/**
* This classes manages the required... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/LogMap3_RepairFacility.java | src/main/java/uk/ac/ox/krr/logmap2/LogMap3_RepairFacility.java | package uk.ac.ox.krr.logmap2;
import uk.ac.ox.krr.logmap2.indexing.JointIndexManager;
import uk.ac.ox.krr.logmap2.oaei.reader.MappingsReaderManager;
import uk.ac.ox.krr.logmap2.indexing.OntologyProcessing;
import uk.ac.ox.krr.logmap2.io.LogOutput;
import uk.ac.ox.krr.logmap2.io.OWLAlignmentFormat;
import uk.ac.ox.kr... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/LogMap_Full.java | src/main/java/uk/ac/ox/krr/logmap2/LogMap_Full.java | package uk.ac.ox.krr.logmap2;
import java.util.Calendar;
import java.util.HashSet;
import java.util.Map;
import java.util.Set;
import org.semanticweb.owlapi.model.OWLOntology;
import uk.ac.ox.krr.logmap2.indexing.IndexManager;
import uk.ac.ox.krr.logmap2.indexing.ReasonerBasedIndexManager;
import uk.ac.ox.krr.logm... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/LogMap2_MappingRanking.java | src/main/java/uk/ac/ox/krr/logmap2/LogMap2_MappingRanking.java | package uk.ac.ox.krr.logmap2;
import java.util.Calendar;
import java.util.Comparator;
import java.util.Set;
import java.util.TreeSet;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.OWLOntology;
import uk.ac.ox.krr.logmap2.indexing.JointIndexManager;
import uk.ac.ox.krr.logmap2.indexing.... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/LogMap2Core.java | src/main/java/uk/ac/ox/krr/logmap2/LogMap2Core.java | package uk.ac.ox.krr.logmap2;
import java.io.*;
import java.util.HashMap;
import java.util.Comparator;
import java.util.Iterator;
import java.util.Set;
import java.util.Map;
import java.util.TreeSet;
import java.util.HashSet;
import org.semanticweb.owlapi.model.OWLEntity;
import org.semanticweb.owlapi.model.OWLO... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | true |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/AddConfidence2Mappings.java | src/main/java/uk/ac/ox/krr/logmap2/AddConfidence2Mappings.java | package uk.ac.ox.krr.logmap2;
import java.util.Calendar;
import java.util.HashSet;
import java.util.Set;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.OWLOntology;
import uk.ac.ox.krr.logmap2.indexing.JointIndexManager;
import uk.ac.ox.krr.logmap2.indexing.OntologyProcessing;
import uk... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/LogMap2_CommandLine.java | src/main/java/uk/ac/ox/krr/logmap2/LogMap2_CommandLine.java | package uk.ac.ox.krr.logmap2;
import uk.ac.ox.krr.logmap2.oaei.reader.MappingsReaderManager;
import uk.ac.ox.krr.logmap_lite.LogMap_Lite;
import uk.ac.ox.krr.logmap2.oaei.FromRDFAlign2OWL;
public class LogMap2_CommandLine {
private static String getHelpMessage(){
return "LogMap 2 can operate as an ontology mat... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/LexicalUtilities.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/LexicalUtilities.java | /*******************************************************************************
* Copyright 2012 by the Department of Computer Science (University of Oxford)
*
* This file is part of LogMap.
*
* LogMap is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser Gener... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/NormalizeNumbers.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/NormalizeNumbers.java | /*******************************************************************************
* Copyright 2012 by the Department of Computer Science (University of Oxford)
*
* This file is part of LogMap.
*
* LogMap is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser Gener... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/NormalizeDate.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/NormalizeDate.java | package uk.ac.ox.krr.logmap2.lexicon;
import java.text.ParseException;
import java.text.SimpleDateFormat;
import java.util.ArrayList;
import java.util.Date;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
public class NormalizeDate {
private static SimpleDateFormat formatter_in = new Simpl... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/LexicalUtilitiesStatic.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/LexicalUtilitiesStatic.java | /*******************************************************************************
* Copyright 2012 by the Department of Computer Science (University of Oxford)
*
* This file is part of LogMap.
*
* LogMap is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser Gener... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/StemmingMapLoader.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/StemmingMapLoader.java | /*******************************************************************************
* Copyright 2012 by the Department of Computer Science (University of Oxford)
*
* This file is part of LogMap.
*
* LogMap is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser Gener... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/PorterStemmer.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/PorterStemmer.java | package uk.ac.ox.krr.logmap2.lexicon.stemming;
import java.io.*;
/*
Porter stemmer in Java. The original paper is in
Porter, 1980, An algorithm for suffix stripping, Program, Vol. 14,
no. 3, pp 130-137,
See also http://www.tartarus.org/~martin/PorterStemmer
History:
Release 1
Bug ... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/PaiceStemmerBridge.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/PaiceStemmerBridge.java | /*******************************************************************************
* Copyright 2012 by the Department of Computer Science (University of Oxford)
*
* This file is part of LogMap.
*
* LogMap is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser Gener... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/IteratedLovinsStemmer.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/IteratedLovinsStemmer.java | package uk.ac.ox.krr.logmap2.lexicon.stemming;
/*
* IteratedLovinsStemmer.java
* Copyright (C) 2001 Eibe Frank
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either ver... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/PorterStemmerBridge.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/PorterStemmerBridge.java | /*******************************************************************************
* Copyright 2012 by the Department of Computer Science (University of Oxford)
*
* This file is part of LogMap.
*
* LogMap is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser Gener... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/StemmerTester.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/StemmerTester.java | /*******************************************************************************
* Copyright 2012 by the Department of Computer Science (University of Oxford)
*
* This file is part of LogMap.
*
* LogMap is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser Gener... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/Stemmer.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/Stemmer.java | /*******************************************************************************
* Copyright 2012 by the Department of Computer Science (University of Oxford)
*
* This file is part of LogMap.
*
* LogMap is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser Gener... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/LovinsIterStemmerBridge.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/LovinsIterStemmerBridge.java | /*******************************************************************************
* Copyright 2012 by the Department of Computer Science (University of Oxford)
*
* This file is part of LogMap.
*
* LogMap is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser Gener... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/StemmingLauncher.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/StemmingLauncher.java | /*******************************************************************************
* Copyright 2012 by the Department of Computer Science (University of Oxford)
*
* This file is part of LogMap.
*
* LogMap is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser Gener... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
ernestojimenezruiz/logmap-matcher | https://github.com/ernestojimenezruiz/logmap-matcher/blob/f07ed4b30dfa6b0fddada28f8ca2526e475e55da/src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/PaiceStemmer.java | src/main/java/uk/ac/ox/krr/logmap2/lexicon/stemming/PaiceStemmer.java | package uk.ac.ox.krr.logmap2.lexicon.stemming;
import java.io.BufferedReader;
import java.io.BufferedWriter;
import java.io.FileReader;
import java.io.FileWriter;
import java.io.InputStreamReader;
import java.util.StringTokenizer;
import java.util.Vector;
/* author: Christopher O'Neill
date: Sep 2000
commen... | java | Apache-2.0 | f07ed4b30dfa6b0fddada28f8ca2526e475e55da | 2026-01-05T02:35:46.301863Z | false |
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