Commit History

  1. Update README.md

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  2. Rename stem_neural_stem_cells.h5ad to stem_cells/stem_neural_stem_cells.h5ad

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  3. Upload stem_neural_stem_cells.h5ad

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  1. Rename tumor_cells/metastatic_tumor_cells /tumor_thyroid_metastatic_tumor_cells.h5ad to tumor_cells/metastatic_tumor_cells/tumor_thyroid_metastatic_tumor_cells.h5ad

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  2. Rename benchmark results/results_tumor_primary_site_tracing.csv to benchmark results/by_task/results_tumor_primary_site_tracing.csv

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  3. Rename benchmark results/results_tumor_cell_identification.csv to benchmark results/by_task/results_tumor_cell_identification.csv

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  4. Rename benchmark results/results_stem_cell_subtype_classification.csv to benchmark results/by_task/results_stem_cell_subtype_classification.csv

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  5. Rename benchmark results/results_stem_cell_identification.csv to benchmark results/by_task/results_stem_cell_identification.csv

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  6. Rename benchmark results/results_neural_cell_subtype_classification.csv to benchmark results/by_task/results_neural_cell_subtype_classification.csv

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  7. Rename benchmark results/results_neural_cell_identification.csv to benchmark results/by_task/results_neural_cell_identification.csv

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  8. Upload 6 files

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  9. Rename tumor_cells / metastatic_tumor_cells /tumor_thyroid_metastatic_tumor_cells.h5ad to tumor_cells/metastatic_tumor_cells /tumor_thyroid_metastatic_tumor_cells.h5ad

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  10. Rename results/by_model/uce_metrics.csv to benchmark results/by_model/uce_metrics.csv

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  11. Rename results/by_model/scgpt_metrics.csv to benchmark results/by_model/scgpt_metrics.csv

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  12. Rename results/by_model/scfoundation_metrics.csv to benchmark results/by_model/scfoundation_metrics.csv

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  13. Rename results/by_model/scLong_metrics.csv to benchmark results//by_model/scLong_metrics.csv

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  14. Rename results/by_model/geneformer_metrics.csv to benchmark results/by_model/geneformer_metrics.csv

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  15. Rename results/uce_metrics.csv to results/by_model/uce_metrics.csv

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  16. Rename results/scgpt_metrics.csv to results/by_model/scgpt_metrics.csv

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  17. Rename results/scfoundation_metrics.csv to results/by_model/scfoundation_metrics.csv

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  18. Rename results/scLong_metrics.csv to results/by_model/scLong_metrics.csv

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  19. Rename results/geneformer_metrics.csv to results/by_model/geneformer_metrics.csv

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  20. Update README.md

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  21. Update README.md

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  22. Update README.md

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  23. Rename tumor_thyroid_metastatic_tumor_cells.h5ad to tumor_cells / metastatic_tumor_cells /tumor_thyroid_metastatic_tumor_cells.h5ad

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  24. Rename tumor_pancreas_metastatic_tumor_cells.h5ad to tumor_cells/metastatic_tumor_cells/tumor_pancreas_metastatic_tumor_cells.h5ad

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  25. Rename tumor_prostate_circulating_tumor_cells.h5ad to tumor_cells/circulating_tumor_cells/tumor_prostate_circulating_tumor_cells.h5ad

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  26. Rename tumor_melanoma_circulating_tumor_cells.h5ad to tumor_cells/circulating_tumor_cells/tumor_melanoma_circulating_tumor_cells.h5ad

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  27. Rename tumor_cells/tumor_liver_circulating_tumor_cells.h5ad to tumor_cells/circulating_tumor_cells/tumor_liver_circulating_tumor_cells.h5ad

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  28. Rename tumor_cells/tumor_colorectal_circulating_tumor_cells.h5ad to tumor_cells/circulating_tumor_cells/tumor_colorectal_circulating_tumor_cells.h5ad

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  29. Rename tumor_cells/tumor_breast_circulating_tumor_cells.h5ad to tumor_cells/circulating_tumor_cells/tumor_breast_circulating_tumor_cells.h5ad

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  30. Rename tumor_cells/tumor_liver_metastatic_tumor_cells.h5ad to tumor_cells/metastatic_tumor_cells/tumor_liver_metastatic_tumor_cells.h5ad

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  31. Rename tumor_cells/tumor_head_neck_metastatic_tumor_cells.h5ad to tumor_cells/metastatic_tumor_cells/tumor_head_neck_metastatic_tumor_cells.h5ad

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  32. Rename tumor_cells/tumor_gastric_metastatic_tumor_cells.h5ad to tumor_cells/metastatic_tumor_cells/tumor_gastric_metastatic_tumor_cells.h5ad

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  33. Rename tumor_ovarian_metastatic_tumor_cells.h5ad to tumor_cells/metastatic_tumor_cells/tumor_ovarian_metastatic_tumor_cells.h5ad

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  34. Rename tumor_cells/tumor_colorectal_metastatic_tumor_cells.h5ad to tumor_cells/metastatic_tumor_cells/tumor_colorectal_metastatic_tumor_cells.h5ad

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  35. Rename tumor_lung_metastatic_tumor_cells.h5ad to tumor_cells/metastatic_tumor_cells/tumor_lung_metastatic_tumor_cells.h5ad

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  36. Rename tumor_cells/tumor_breast_metastatic_tumor_cells.h5ad to tumor_cells/metastatic_tumor_cells/tumor_breast_metastatic_tumor_cells.h5ad

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  37. Rename tumor_cells/circulating_tumor_cells/tumor_melanoma_metastatic_tumor_cells.h5ad to tumor_cells/metastatic_tumor_cells/tumor_melanoma_metastatic_tumor_cells.h5ad

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  38. Rename tumor_melanoma_metastatic_tumor_cells.h5ad to tumor_cells/circulating_tumor_cells/tumor_melanoma_metastatic_tumor_cells.h5ad

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  39. Rename tumor_lung_circulating_tumor_cells.h5ad to tumor_cells/circulating_tumor_cells/tumor_lung_circulating_tumor_cells.h5ad

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  40. Rename tumor_cells/tumor_kidney_primary_tumor_cells.h5ad to tumor_cells/primary_tumor_cells/tumor_kidney_primary_tumor_cells.h5ad

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  41. Rename tumor_cells/tumor_head_neck_primary_tumor_cells.h5ad to tumor_cells/primary_tumor_cells/tumor_head_neck_primary_tumor_cells.h5ad

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  42. Rename tumor_cells/tumor_glioma_primary_tumor_cells.h5ad to tumor_cells/primary_tumor_cells/tumor_glioma_primary_tumor_cells.h5ad

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  43. Rename tumor_cells/tumor_esophageal_primary_tumor_cells.h5ad to tumor_cells/primary_tumor_cells/tumor_esophageal_primary_tumor_cells.h5ad

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  44. Rename tumor_cells/tumor_gastric_primary_tumor_cells.h5ad to tumor_cells/primary_tumor_cells/tumor_gastric_primary_tumor_cells.h5ad

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  45. Rename tumor_cells/tumor_dsrct_primary_tumor_cells.h5ad to tumor_cells/primary_tumor_cells/tumor_dsrct_primary_tumor_cells.h5ad

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  46. Rename tumor_cells/tumor_colorectal_primary_tumor_cells.h5ad to tumor_cells/primary_tumor_cells/tumor_colorectal_primary_tumor_cells.h5ad

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  47. Rename tumor_cells/tumor_cervical_primary_tumor_cells.h5ad to tumor_cells/primary_tumor_cells/tumor_cervical_primary_tumor_cells.h5ad

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