File size: 6,780 Bytes
07cd9e4 62de771 07cd9e4 62de771 07cd9e4 62de771 07cd9e4 62de771 07cd9e4 62de771 07cd9e4 62de771 07cd9e4 62de771 07cd9e4 62de771 07cd9e4 62de771 07cd9e4 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 | {
"checkpoint": {
"files": {
"config.json": "git-sha1:71c8241dc28a5fb636248267a0927c0242b264c1",
"model.safetensors": "sha256:e4232c30fd35fe2f57051ec88a703996ac94520580b4b836894207a3d45d9ff8",
"special_tokens_map.json": "git-sha1:c907ee1dc19b24241749b32d665c291c7e6e8e4b",
"tokenizer.json": "git-sha1:81c797f56768b22dec0301fa771f018b7e43e98c",
"tokenizer_config.json": "git-sha1:2238856624f8d39f03af53a2576c2d9b18c82f61"
},
"repo_id": "biohub/ESMC-600M",
"revision": "a7e82012c83126b9eedb055fea9fa84b6c02f094"
},
"environment": {
"details": {
"cuda_device": "NVIDIA GH200 480GB",
"cuda_device_capability": "[9,0]",
"cuda_driver": "570.148.08",
"cuda_runtime": "13.0",
"cuda_total_memory": "101468602368",
"packages": "{\"accelerate\":\"1.13.0\",\"anyio\":\"4.14.2\",\"asttokens\":\"3.0.2\",\"attrs\":\"26.1.0\",\"biopython\":\"1.87\",\"biotite\":\"1.7.1\",\"biotraj\":\"1.2.2\",\"boto3\":\"1.43.53\",\"botocore\":\"1.43.53\",\"brotli\":\"1.2.0\",\"certifi\":\"2026.7.22\",\"charset-normalizer\":\"3.4.9\",\"cloudpathlib\":\"0.24.0\",\"comm\":\"0.2.3\",\"contourpy\":\"1.3.3\",\"cuda-bindings\":\"13.3.1\",\"cuda-pathfinder\":\"1.6.0\",\"cuda-toolkit\":\"13.0.3.0\",\"cycler\":\"0.12.1\",\"decorator\":\"5.3.1\",\"dna_features_viewer\":\"3.1.5\",\"einops\":\"0.8.2\",\"esm\":\"3.3.0\",\"executing\":\"2.2.1\",\"filelock\":\"3.32.0\",\"fonttools\":\"4.63.0\",\"fsspec\":\"2026.6.0\",\"h11\":\"0.16.0\",\"hf-xet\":\"1.5.2\",\"httpcore\":\"1.0.9\",\"httpx\":\"0.28.1\",\"huggingface_hub\":\"0.36.2\",\"idna\":\"3.18\",\"iniconfig\":\"2.3.0\",\"ipython\":\"9.15.0\",\"ipython_pygments_lexers\":\"1.1.1\",\"ipywidgets\":\"8.1.8\",\"jedi\":\"0.20.0\",\"jinja2\":\"3.1.6\",\"jmespath\":\"1.1.0\",\"joblib\":\"1.5.3\",\"jupyterlab_widgets\":\"3.0.16\",\"kiwisolver\":\"1.5.0\",\"markupsafe\":\"3.0.3\",\"matplotlib\":\"3.11.1\",\"matplotlib-inline\":\"0.2.2\",\"mpmath\":\"1.3.0\",\"msgpack\":\"1.2.1\",\"msgpack-numpy\":\"0.4.8\",\"narwhals\":\"2.24.0\",\"networkx\":\"3.6.1\",\"numpy\":\"1.26.4\",\"nvidia-cublas\":\"13.1.1.3\",\"nvidia-cuda-cupti\":\"13.0.85\",\"nvidia-cuda-nvrtc\":\"13.0.88\",\"nvidia-cuda-runtime\":\"13.0.96\",\"nvidia-cudnn-cu13\":\"9.20.0.48\",\"nvidia-cufft\":\"12.0.0.61\",\"nvidia-cufile\":\"1.15.1.6\",\"nvidia-curand\":\"10.4.0.35\",\"nvidia-cusolver\":\"12.0.4.66\",\"nvidia-cusparse\":\"12.6.3.3\",\"nvidia-cusparselt-cu13\":\"0.8.1\",\"nvidia-nccl-cu13\":\"2.29.7\",\"nvidia-nvjitlink\":\"13.3.33\",\"nvidia-nvshmem-cu13\":\"3.4.5\",\"nvidia-nvtx\":\"13.0.85\",\"packaging\":\"26.2\",\"pandas\":\"3.0.3\",\"parso\":\"0.8.7\",\"pexpect\":\"4.9.0\",\"pillow\":\"12.3.0\",\"pip\":\"26.1.1\",\"pluggy\":\"1.6.0\",\"prompt_toolkit\":\"3.0.52\",\"psutil\":\"7.2.2\",\"ptyprocess\":\"0.7.0\",\"pure_eval\":\"0.2.3\",\"py3dmol\":\"2.5.5\",\"pydssp\":\"0.9.1\",\"pygments\":\"2.20.0\",\"pygtrie\":\"2.5.0\",\"pyparsing\":\"3.3.2\",\"pytest\":\"9.0.2\",\"python-dateutil\":\"2.9.0.post0\",\"pyyaml\":\"6.0.3\",\"rdkit\":\"2026.3.4\",\"regex\":\"2026.7.19\",\"requests\":\"2.34.2\",\"s3transfer\":\"0.19.1\",\"safetensors\":\"0.5.3\",\"scikit-learn\":\"1.9.0\",\"scipy\":\"1.17.1\",\"setuptools\":\"83.0.0\",\"six\":\"1.17.0\",\"stack-data\":\"0.6.3\",\"sympy\":\"1.14.0\",\"tenacity\":\"9.1.4\",\"threadpoolctl\":\"3.6.0\",\"tokenizers\":\"0.22.2\",\"torch\":\"2.13.0+cu130\",\"tqdm\":\"4.69.0\",\"traitlets\":\"5.15.1\",\"transformers\":\"4.57.6\",\"triton\":\"3.7.1\",\"typing_extensions\":\"4.16.0\",\"urllib3\":\"2.7.0\",\"uv\":\"0.10.12\",\"wcwidth\":\"0.8.2\",\"wheel\":\"0.47.0\",\"widgetsnbextension\":\"4.0.15\",\"zstd\":\"1.5.6.1\"}",
"platform_machine": "aarch64",
"python": "3.12.3",
"torch": "2.13.0+cu130",
"uname": "{\"machine\":\"aarch64\",\"release\":\"6.8.0-1013-nvidia-64k\",\"system\":\"Linux\",\"version\":\"#14~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Aug 21 01:03:36 UTC 2\"}"
},
"fingerprint": "8dd66dcd2659bae31ac59c99af243451c086da5a7bf8a64da49cd16b787102fd"
},
"generation_command": [
"python",
"-m",
"tools.goldens",
"--native-root",
"artifacts/reference",
"--output-root",
"tests/goldens",
"--model",
"esmc_large"
],
"input_fingerprint": "182b178e6588beba6a1c681379e3bc8068824eccecc192891173efb89c5068f6",
"model_id": "esmc_large",
"schema_version": 1,
"source_files": {
"native/bf16.safetensors": "9591067c1bb9a85177c4e5651ceb2980bf90fe8ec81ed86878889266627ec607",
"native/fp32.safetensors": "c56f179d97cb84427bca7aa28fe822a2ec7f4f5e7bcfc896e8f3247e55967664",
"native/metadata.json": "df68a3aa614473168dc81215949525f32f2b388ce262ab74d7271b15c7aa2f8a"
},
"sources": [
{
"id": "biohub-esm",
"revision": "82ee35553d39169d678f784c8d3f8712ffd7d2c4",
"url": "https://github.com/Biohub/esm.git"
},
{
"id": "biohub-transformers",
"revision": "3a8956fb4d4ea16b0ec8e71deef2c2909b6a5cbf",
"url": "https://github.com/Biohub/transformers.git"
}
],
"tensor_file": {
"path": "esmc_large.safetensors",
"sha256": "2b1ce3de5a7a27f171055f5c7aec4e7e50f0e809a1dc46508aaa0b472365015d"
},
"tensors": {
"input__attention_mask": {
"dtype": "int64",
"sha256": "a4e9ccfdfcb15d75f04569d8635f6121b56d1316e59da2db60416ce57f78551f",
"shape": [
3,
63
]
},
"input__input_ids": {
"dtype": "int64",
"sha256": "7c017cc9226e1262e354dd8494e871929c0ef516214ad8afa58c97df32885bed",
"shape": [
3,
63
]
},
"input__sequence_id": {
"dtype": "bool",
"sha256": "546670f3d1d77f83906edd5dac50f17e99493f27136e41b2fcae8d6d3d9613ba",
"shape": [
3,
63
]
},
"official_bf16__last_hidden_state": {
"dtype": "bfloat16",
"sha256": "b6b066a58e24b50fbfadb3ed4be47a0ed23c4c6f5e545875a491655a7c2496b0",
"shape": [
3,
63,
1152
]
},
"official_bf16__logits": {
"dtype": "bfloat16",
"sha256": "10204b50f8f6a3062c60bacea653f2af30d0a2644417dd89eca72ed67ab29541",
"shape": [
3,
63,
64
]
},
"output__last_hidden_state": {
"dtype": "float32",
"sha256": "312b2a80dec7f4f692f18ad4178382dfb6334aa5924c270540d5737dac658644",
"shape": [
3,
63,
1152
]
},
"output__logits": {
"dtype": "float32",
"sha256": "bc1c54363d270dd137d2ffc8fbefb7037cd14caf7c50b82500b9288d5c99c4df",
"shape": [
3,
63,
64
]
},
"residue_mask": {
"dtype": "bool",
"sha256": "73319c84be8834bd1df5ff869f2137ac3aef45c900f775c33824b61bda50eb24",
"shape": [
3,
63
]
}
}
}
|