lhallee commited on
Commit
98be2a8
·
verified ·
1 Parent(s): f37b1ab

Archive v2-reproduction-20260922 train-esmfold2_600

Browse files
confidence-v2/v2-reproduction-20260922/runs/esmfold2_600/v2/best-ema.safetensors ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e84726a050722e1b722712c87d17a5388bd3699e2520e4a59abb1d828dfb8de7
3
+ size 31082180
confidence-v2/v2-reproduction-20260922/runs/esmfold2_600/v2/file-identities.json ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ {
2
+ "runs/esmfold2_600/v2/final-ema.safetensors": "e84726a050722e1b722712c87d17a5388bd3699e2520e4a59abb1d828dfb8de7",
3
+ "runs/esmfold2_600/v2/best-ema.safetensors": "e84726a050722e1b722712c87d17a5388bd3699e2520e4a59abb1d828dfb8de7",
4
+ "runs/esmfold2_600/v2/report.json": "c40e6c4b278d67b932f808d3317eb817fdbc7b757e6e695d507f025a4b4412b0",
5
+ "runs/esmfold2_600/v2/wandb-id.txt": "2559221b6eb22ada63317f058fcd0211a0d0e88fc451a65dcab0edea24df02a7"
6
+ }
confidence-v2/v2-reproduction-20260922/runs/esmfold2_600/v2/final-ema.safetensors ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e84726a050722e1b722712c87d17a5388bd3699e2520e4a59abb1d828dfb8de7
3
+ size 31082180
confidence-v2/v2-reproduction-20260922/runs/esmfold2_600/v2/report.json ADDED
@@ -0,0 +1,715 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "status": "complete",
3
+ "model_id": "esmfold2_600",
4
+ "updates": 780,
5
+ "stopped_by": "planned_updates",
6
+ "elapsed_hours": 18.056257766365835,
7
+ "final_validation": {
8
+ "plddt_ce": 2.6768538231262937,
9
+ "pae_ce": 2.7212126194499433,
10
+ "total_ce": 5.398066442576237,
11
+ "target_plddt_spearman": 0.9347254806591897,
12
+ "within_target_plddt_accuracy": 0.5797101449275363,
13
+ "within_target_plddt_pairs": 69.0,
14
+ "within_target_iptm_accuracy": 0.5104477611940299,
15
+ "within_target_iptm_pairs": 335.0,
16
+ "calibration_error_10bin": 0.00246133785936054
17
+ },
18
+ "best_validation": {
19
+ "plddt_ce": 2.6768538231262937,
20
+ "pae_ce": 2.7212126194499433,
21
+ "total_ce": 5.398066442576237,
22
+ "target_plddt_spearman": 0.9347254806591897,
23
+ "within_target_plddt_accuracy": 0.5797101449275363,
24
+ "within_target_plddt_pairs": 69.0,
25
+ "within_target_iptm_accuracy": 0.5104477611940299,
26
+ "within_target_iptm_pairs": 335.0,
27
+ "calibration_error_10bin": 0.00246133785936054,
28
+ "update": 780
29
+ },
30
+ "selected_checkpoint": "final-ema.safetensors",
31
+ "wandb_url": "https://wandb.ai/lhallee/fastplms-confidence/runs/820d2cfa56c0",
32
+ "config": {
33
+ "model_id": "esmfold2_600",
34
+ "samples_per_target": 4,
35
+ "targets_per_update": 16,
36
+ "learning_rate": 0.0001,
37
+ "minimum_learning_rate": 1e-05,
38
+ "weight_decay": 0.01,
39
+ "warmup_updates": 78,
40
+ "planned_updates": 780,
41
+ "ema_decay": 0.9871794871794872,
42
+ "gradient_clip": 1.0,
43
+ "pae_weight": 1.0,
44
+ "ranking_weight": 0.5,
45
+ "ranking_margin": 0.01,
46
+ "ranking_temperature": 0.05,
47
+ "monomer_fraction": 0.5,
48
+ "validation_interval_seconds": 5400,
49
+ "checkpoint_interval_seconds": 1800,
50
+ "maximum_seconds": 73800,
51
+ "validation_limit": null,
52
+ "num_loops": 3,
53
+ "num_sampling_steps": 50,
54
+ "seed": 17
55
+ },
56
+ "provenance": {
57
+ "model_id": "esmfold2_600",
58
+ "base_repo": "Synthyra/ESMFold2-600",
59
+ "base_revision": "71c67d0b2b73dc245ea7c3cc0d0476439a882d08",
60
+ "base_weight_sha256": "11a53c1b4700b6c62a5a464fc3ec7076160c19e8584157f88e13275116cfd602",
61
+ "donor_repo": "biohub/ESMFold2-Experimental-Fast-Cutoff2025",
62
+ "donor_revision": "74b88548bf19688b8727432db0d698cb2e1d8783",
63
+ "donor_weight_sha256": "4e903b740ad6ad704ec60881bfd593e0d6c874a630ffa0f0838276e0b665088f",
64
+ "targets": {
65
+ "train": {
66
+ "count": 475969,
67
+ "sha256": "a62feb57800aa1e123f2f0f2c36409ff2f37d98348269fd33728efe72f29bc0b"
68
+ },
69
+ "validation": {
70
+ "count": 256,
71
+ "sha256": "6e05ac9e51d33fdbfb23b924f16af472419747c0e7c3904a252760bdd4f8f2f3"
72
+ }
73
+ },
74
+ "source_files": {
75
+ "src/fastplms/models.toml": {
76
+ "size": 83488,
77
+ "sha256": "0967a7805cd5ba107825a7dc473008d49c0334bd18714e1dfa9e51d0c42ee6f1"
78
+ },
79
+ "src/fastplms/__init__.py": {
80
+ "size": 1857,
81
+ "sha256": "8503e02debf24abc6d33c1913ff3eb9f245e63f7e62017e220d072c7393fdf2c"
82
+ },
83
+ "src/fastplms/attention/__init__.py": {
84
+ "size": 2259,
85
+ "sha256": "ae5c77f7293ae4a411fe1e57ac1e0ba69d47c077de8e46f6561f9af58ba2b5e2"
86
+ },
87
+ "src/fastplms/attention/_auto.py": {
88
+ "size": 7050,
89
+ "sha256": "d7adc2c3d9bb1a5b301e1a379ce28983f134ddbac9b44a3cf5bbf322cd7139a5"
90
+ },
91
+ "src/fastplms/attention/_core.py": {
92
+ "size": 35863,
93
+ "sha256": "3f3a09c590f566cb77d9586fd8ccff48496a67be0ace20e3db90165b54ffa07e"
94
+ },
95
+ "src/fastplms/attention/_kernel_lock.py": {
96
+ "size": 7063,
97
+ "sha256": "17adb859c994676b81df142e61d26ee5a723080c2a4fabc78c650b57300d51f8"
98
+ },
99
+ "src/fastplms/attention/interfaces.py": {
100
+ "size": 16976,
101
+ "sha256": "3b538e4b109f57b2a3a74cb1f0f7cbe8b43b6b6479f7161475cc1ec9bb260a08"
102
+ },
103
+ "src/fastplms/embeddings/__init__.py": {
104
+ "size": 1505,
105
+ "sha256": "cf0648de905a00ad16c0aece328eeb05f25739a4cf89b47b915e0f2b19c3ce26"
106
+ },
107
+ "src/fastplms/embeddings/batches.py": {
108
+ "size": 16175,
109
+ "sha256": "569693978dafddf585e45789b6ea9b45246c604def422f3c13dae54396503a25"
110
+ },
111
+ "src/fastplms/embeddings/identity.py": {
112
+ "size": 21198,
113
+ "sha256": "9508d14d2a997250e388dd94d2357eee28792e5da67509e917179160e627720d"
114
+ },
115
+ "src/fastplms/embeddings/inputs.py": {
116
+ "size": 9833,
117
+ "sha256": "b9c3f3eb228a6b21948afc141bd148d4d976cd4c142a9f180f36c33d6ff99599"
118
+ },
119
+ "src/fastplms/embeddings/output.py": {
120
+ "size": 9082,
121
+ "sha256": "1b86275772880de0f4ee51d7a125a877dab086cf56a4ec257dce7b9805cc8289"
122
+ },
123
+ "src/fastplms/embeddings/pooling.py": {
124
+ "size": 9876,
125
+ "sha256": "a393e78523e1fcb7362755619a580ea443814a410a995d90bd2d90f5b1d57bd9"
126
+ },
127
+ "src/fastplms/embeddings/runner.py": {
128
+ "size": 18432,
129
+ "sha256": "26371501163a88957701d9c4f4f6dbdc017c4b9ca3fb88cadc1b164c9334d565"
130
+ },
131
+ "src/fastplms/embeddings/storage.py": {
132
+ "size": 66427,
133
+ "sha256": "2091a59482370ed8830aa12cd8fde3d61e23a78368ee8267a89f8b7feb83cad3"
134
+ },
135
+ "src/fastplms/embeddings/types.py": {
136
+ "size": 6463,
137
+ "sha256": "c58f8c6a37a11a937c3f77b4e1617d5f213923d98ecaffddcdd283bd9dc42fe7"
138
+ },
139
+ "src/fastplms/models/__init__.py": {
140
+ "size": 336,
141
+ "sha256": "d3dd084f5e8fafcf2d0fe4a26e4ab9284d3f9414b1f9a5bd86e308a406447c43"
142
+ },
143
+ "src/fastplms/models/_diffusion_generation.py": {
144
+ "size": 20233,
145
+ "sha256": "1cadcca445ee9faa97f54cc1e47c30bb106d77344a7a91779b73f7517180b370"
146
+ },
147
+ "src/fastplms/models/_esm_rotary.py": {
148
+ "size": 4445,
149
+ "sha256": "b9b107633e9eb434b93a4f4cc0393bb8454d1a4ad67722038d177dffddd802b5"
150
+ },
151
+ "src/fastplms/models/ankh/__init__.py": {
152
+ "size": 0,
153
+ "sha256": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855"
154
+ },
155
+ "src/fastplms/models/ankh/modeling_ankh.py": {
156
+ "size": 65086,
157
+ "sha256": "25f67d1e62da5bf3f2f9b1ce7bf032b6e0c4c3327f30eae05dd76037f9a08634"
158
+ },
159
+ "src/fastplms/models/boltz/__init__.py": {
160
+ "size": 347,
161
+ "sha256": "776dd9df11291750ddc4389f5f58fdd52c7e596db4b95c28129cb639f3903c43"
162
+ },
163
+ "src/fastplms/models/boltz/_pair_attention.py": {
164
+ "size": 1816,
165
+ "sha256": "736c4553adc2b871b04db325fbd2d8ee6f1c18bbb4ffacb440a5c2d76304169b"
166
+ },
167
+ "src/fastplms/models/boltz/cif_writer.py": {
168
+ "size": 5779,
169
+ "sha256": "6a6124240c4c9ffdc6de67df731c1eb05aed5dbaae60dd0192ab3b31c9556d42"
170
+ },
171
+ "src/fastplms/models/boltz/minimal_featurizer.py": {
172
+ "size": 38227,
173
+ "sha256": "c896a132c505e13d35aa51dd68eb78c37e873010d5c402f0ab78cf43bf9dd3cf"
174
+ },
175
+ "src/fastplms/models/boltz/minimal_structures.py": {
176
+ "size": 514,
177
+ "sha256": "41715893ae68fd75a6b47e7ef99c4db50eb460223d09717e5f6c074f39c59a68"
178
+ },
179
+ "src/fastplms/models/boltz/modeling_boltz2.py": {
180
+ "size": 46081,
181
+ "sha256": "6ff78cfcbe10cfdb2fdd2da15ed9f6a7e37f1bc6ed66b2e168506e14ccbb36f9"
182
+ },
183
+ "src/fastplms/models/boltz/vb_const.py": {
184
+ "size": 7587,
185
+ "sha256": "4b31e76f49710b19ce8ce9bb4cb2906bee79c000d1f0960e2440fd25ad9f967d"
186
+ },
187
+ "src/fastplms/models/boltz/vb_layers_attention.py": {
188
+ "size": 3797,
189
+ "sha256": "71918a961e16c2133b69274eea77e73d11325a79d2e117da452163606e0982c0"
190
+ },
191
+ "src/fastplms/models/boltz/vb_layers_attentionv2.py": {
192
+ "size": 2776,
193
+ "sha256": "50297a67887a95ba74bf583b7fb90c3e74d391118f484a39d8f419d6c0d43bb5"
194
+ },
195
+ "src/fastplms/models/boltz/vb_layers_confidence_utils.py": {
196
+ "size": 10427,
197
+ "sha256": "77099208f4bbd18b895ac1ef854ba1ee22762f64024037f95712c6f6b537b8fb"
198
+ },
199
+ "src/fastplms/models/boltz/vb_layers_dropout.py": {
200
+ "size": 1505,
201
+ "sha256": "311c1c9770c23df5148c066e8c8a054d6a32830c9800d46ba9f17e74670fb8cd"
202
+ },
203
+ "src/fastplms/models/boltz/vb_layers_initialize.py": {
204
+ "size": 3152,
205
+ "sha256": "c0e52df5833c3459761a4d042d7d3afff7e336cf4e8d3e66a59c6358c268e2c0"
206
+ },
207
+ "src/fastplms/models/boltz/vb_layers_outer_product_mean.py": {
208
+ "size": 4267,
209
+ "sha256": "107d37a5572322e45bb279f164dada9e9fbc8542a245ce65342727aed2bc7390"
210
+ },
211
+ "src/fastplms/models/boltz/vb_layers_pair_averaging.py": {
212
+ "size": 4487,
213
+ "sha256": "cbec19c03dada6185bd053d50b01fcbf7958a839449dda24d465d98412199806"
214
+ },
215
+ "src/fastplms/models/boltz/vb_layers_pairformer.py": {
216
+ "size": 11493,
217
+ "sha256": "8de7846d1ff203e88368ce9dd26bdb91c6150991994413b5ca173714e425ec56"
218
+ },
219
+ "src/fastplms/models/boltz/vb_layers_transition.py": {
220
+ "size": 3093,
221
+ "sha256": "0a1ce258ce88f1571937b4141fb94e39e700cb6e2538400c9468bc0db6ac6ad4"
222
+ },
223
+ "src/fastplms/models/boltz/vb_layers_triangular_mult.py": {
224
+ "size": 4753,
225
+ "sha256": "fc37d98cd6b0be23e497dce53a05332460f2fa37f782f9a948e25abc254942c7"
226
+ },
227
+ "src/fastplms/models/boltz/vb_loss_diffusionv2.py": {
228
+ "size": 6506,
229
+ "sha256": "8a596179bf54f47334bb7da5fb3383581b7a2c3db28879d7c42019a31f5395cd"
230
+ },
231
+ "src/fastplms/models/boltz/vb_modules_confidencev2.py": {
232
+ "size": 25062,
233
+ "sha256": "cfa10e8f10405b230bd764f702c0d39f17ab7b42386df0e59adc681467d1f365"
234
+ },
235
+ "src/fastplms/models/boltz/vb_modules_diffusion_conditioning.py": {
236
+ "size": 4873,
237
+ "sha256": "ab4a9e5a7ccbdac62ff3cc4e04b65188bd442d2ede036ca7971fbefded95990f"
238
+ },
239
+ "src/fastplms/models/boltz/vb_modules_diffusionv2.py": {
240
+ "size": 30705,
241
+ "sha256": "717e6475df080f5941804cfbdfb6a193d5ecd788ea9a01e0dbb073c65460663d"
242
+ },
243
+ "src/fastplms/models/boltz/vb_modules_encodersv2.py": {
244
+ "size": 25374,
245
+ "sha256": "97f0db310f5bbc07da9eee7cb1e6c1bcbe24bc6154add0de932a88b094928193"
246
+ },
247
+ "src/fastplms/models/boltz/vb_modules_transformersv2.py": {
248
+ "size": 10639,
249
+ "sha256": "b5a7d235fe6212a47be6cd7d0e9765bb4475c901d9cc79b199c153910e7ec282"
250
+ },
251
+ "src/fastplms/models/boltz/vb_modules_trunkv2.py": {
252
+ "size": 25162,
253
+ "sha256": "b4429c720b6f324335e6483222b438bc7f6b1ddbc46f9ba2e6180b96819252e9"
254
+ },
255
+ "src/fastplms/models/boltz/vb_modules_utils.py": {
256
+ "size": 11567,
257
+ "sha256": "9d7e416062733c40283a32d38ed547ad9b160d9e66c5d4e3ee179c6f0e7ff055"
258
+ },
259
+ "src/fastplms/models/boltz/vb_potentials_potentials.py": {
260
+ "size": 36675,
261
+ "sha256": "62f654f99407f87f24b1753354478f72b0833d5c302323234e800b0d35b48cc9"
262
+ },
263
+ "src/fastplms/models/boltz/vb_potentials_schedules.py": {
264
+ "size": 2391,
265
+ "sha256": "41c4e59b4af49532dd81e7275413eb31582257ce4af85e33c364394644fbc4ad"
266
+ },
267
+ "src/fastplms/models/boltz/vb_tri_attn_attention.py": {
268
+ "size": 4719,
269
+ "sha256": "96cf947c9d47ccabf104a8dc558cf1b3d94f946ee2b9bc4f90e0fea7e1c131bc"
270
+ },
271
+ "src/fastplms/models/boltz/vb_tri_attn_primitives.py": {
272
+ "size": 9812,
273
+ "sha256": "746538afff040a5de4dd1f93e35a3547e1d08692056dac137de858e4e58baecd"
274
+ },
275
+ "src/fastplms/models/boltz/vb_tri_attn_utils.py": {
276
+ "size": 11300,
277
+ "sha256": "c5fb4adf3110de5699a7c1f639003413b3f8f4a106bd7ae4a3f89486be75b35e"
278
+ },
279
+ "src/fastplms/models/classification_probe.py": {
280
+ "size": 20365,
281
+ "sha256": "5efe95feab4674174ac88d30f9e0659d6c0f8035851b5bc351f3738d479e93a9"
282
+ },
283
+ "src/fastplms/models/dplm/__init__.py": {
284
+ "size": 0,
285
+ "sha256": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855"
286
+ },
287
+ "src/fastplms/models/dplm/modeling_dplm.py": {
288
+ "size": 55368,
289
+ "sha256": "9b7f1ffebf82aa23d7ad763ca910fa897c27b6b5401b9f04f925bde65a3d70a5"
290
+ },
291
+ "src/fastplms/models/dplm2/__init__.py": {
292
+ "size": 127,
293
+ "sha256": "cda00bad9b68061cd2b480863507bb33d9b307f96ae9c454ce26fed746e33776"
294
+ },
295
+ "src/fastplms/models/dplm2/modeling_dplm2.py": {
296
+ "size": 58263,
297
+ "sha256": "6d037e4170452dfe0fffa69659b09175c3a2b032c03e05647e2a5fba37f0daa2"
298
+ },
299
+ "src/fastplms/models/dplm2/tokenization_dplm2.py": {
300
+ "size": 3761,
301
+ "sha256": "b527a626251adc4496d2046a048ea89f5f9326efcbc74114d766fd5b0736cdf2"
302
+ },
303
+ "src/fastplms/models/e1/__init__.py": {
304
+ "size": 0,
305
+ "sha256": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855"
306
+ },
307
+ "src/fastplms/models/e1/attention.py": {
308
+ "size": 17944,
309
+ "sha256": "0800c4279b9beb8f9692eb030f375045448fd9d0afc5acfcb08f6e3f5b734d12"
310
+ },
311
+ "src/fastplms/models/e1/cache.py": {
312
+ "size": 9913,
313
+ "sha256": "bbe4a04036d0dc04b1b8d7fc40f67c19862d9e43180988aba26a2c20c9c9adc6"
314
+ },
315
+ "src/fastplms/models/e1/modeling_e1.py": {
316
+ "size": 98837,
317
+ "sha256": "60373e76e01de527a15c17e7377b4f78b77bf6519f2845ab32e3060c6b39d099"
318
+ },
319
+ "src/fastplms/models/e1/preparation.py": {
320
+ "size": 10628,
321
+ "sha256": "aad61cdd8bbbec9f410f7d4c2b327a0dddc9e612e2e007d359f883f693ed2a24"
322
+ },
323
+ "src/fastplms/models/e1/retrieval.py": {
324
+ "size": 71281,
325
+ "sha256": "7702c46763ff242d423a890edde33867e2273e82dc0bde43f6d92debce9d5f08"
326
+ },
327
+ "src/fastplms/models/esm2/__init__.py": {
328
+ "size": 0,
329
+ "sha256": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855"
330
+ },
331
+ "src/fastplms/models/esm2/modeling_fastesm.py": {
332
+ "size": 45755,
333
+ "sha256": "e40442e9c2479b052b79a0912f375ca22c56ad5aa0dd75137e9bfabec9b1cefc"
334
+ },
335
+ "src/fastplms/models/esm3/__init__.py": {
336
+ "size": 303,
337
+ "sha256": "a2a678dc996ce8238c456cb667a5d63a342e28df72553546c6a8f5893f8f2545"
338
+ },
339
+ "src/fastplms/models/esm3/modeling_esm3.py": {
340
+ "size": 114023,
341
+ "sha256": "590cbf9a34ca439913c0b7d8221e8aef35bfaf98d7de533cc22df76d7d141995"
342
+ },
343
+ "src/fastplms/models/esm_plusplus/__init__.py": {
344
+ "size": 0,
345
+ "sha256": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855"
346
+ },
347
+ "src/fastplms/models/esm_plusplus/modeling_esm_plusplus.py": {
348
+ "size": 82069,
349
+ "sha256": "892ab6c3e69982713980ed83ecfb697c1842731b6415c9d0d448a1529942b0d2"
350
+ },
351
+ "src/fastplms/models/esm_plusplus/modeling_esm_plusplus_sae.py": {
352
+ "size": 9994,
353
+ "sha256": "a8bc37695c29f0a91597bc8c95ff0516615944ac7ee35d18e56c23ebcd52ab5d"
354
+ },
355
+ "src/fastplms/models/esmfold/__init__.py": {
356
+ "size": 0,
357
+ "sha256": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855"
358
+ },
359
+ "src/fastplms/models/esmfold/modeling_fast_esmfold.py": {
360
+ "size": 45830,
361
+ "sha256": "142b2aeb311bd8bfb6a0fa3a911d0ea9aefac27692afdfb34549fce0ac8b37fc"
362
+ },
363
+ "src/fastplms/models/esmfold2/__init__.py": {
364
+ "size": 2030,
365
+ "sha256": "167872850136ffb473f639dddc2323099bc534efe10fdad9fe2a799e444c7a18"
366
+ },
367
+ "src/fastplms/models/esmfold2/attention.py": {
368
+ "size": 1650,
369
+ "sha256": "3112740d2d5a27f8879b274159fae930f6949e80cf015c3f8d8405769e2ab5d7"
370
+ },
371
+ "src/fastplms/models/esmfold2/configuration_esmfold2.py": {
372
+ "size": 12403,
373
+ "sha256": "fc375b356c4df1c1deec26abafac7534e23d0568c0af76c39b204d6e5aaef27d"
374
+ },
375
+ "src/fastplms/models/esmfold2/embedding.py": {
376
+ "size": 4409,
377
+ "sha256": "43c045ebf0502ce801d0f0abf04c7b53b85ba27e8c3eceb546a3c0b1c0581aa3"
378
+ },
379
+ "src/fastplms/models/esmfold2/esmfold2_affine3d.py": {
380
+ "size": 24771,
381
+ "sha256": "7e5a109942e4e8c4f2a83281d2d8b83a04c7cefb7931b27eca6c146af47f2d85"
382
+ },
383
+ "src/fastplms/models/esmfold2/esmfold2_aligner.py": {
384
+ "size": 3050,
385
+ "sha256": "0ac5f9bbfcb98dfa2967070f5f3c6e63b0d5f8dec08afe50ec0c6c14520e2798"
386
+ },
387
+ "src/fastplms/models/esmfold2/esmfold2_atom_indexer.py": {
388
+ "size": 928,
389
+ "sha256": "388d11d06e45062aba55934c0bc32925998ed5d85525bec00bafd9d67b98dc6a"
390
+ },
391
+ "src/fastplms/models/esmfold2/esmfold2_conformers.py": {
392
+ "size": 16121,
393
+ "sha256": "d5be3080a08f672a1f7d6a5d523cf1fe7d7559e7324faa5c735ccd78b4ddad35"
394
+ },
395
+ "src/fastplms/models/esmfold2/esmfold2_constants.py": {
396
+ "size": 6060,
397
+ "sha256": "65f978329690b46c4a3cc9f4815fe439b1e355be03ef2a9134b83ab889958751"
398
+ },
399
+ "src/fastplms/models/esmfold2/esmfold2_constants_esm3.py": {
400
+ "size": 2913,
401
+ "sha256": "6f9c8bbf0f80b6cd9ede136d142b51ff2b84f1b339cb6b6668c2669e8c2584b5"
402
+ },
403
+ "src/fastplms/models/esmfold2/esmfold2_input_builder.py": {
404
+ "size": 6860,
405
+ "sha256": "3fccb115fa79ac88e5e2bb09a2b7273fbc1ae5ca540947eb27d1e827c46baa7b"
406
+ },
407
+ "src/fastplms/models/esmfold2/esmfold2_metrics.py": {
408
+ "size": 10448,
409
+ "sha256": "a3674d794414181b94e5d42c80941c28740893cbc8f3f65a0eabcfd1f18ac7d1"
410
+ },
411
+ "src/fastplms/models/esmfold2/esmfold2_misc.py": {
412
+ "size": 16193,
413
+ "sha256": "e79990024d597bdaaa093a90a342029a1cb044618d4935d7d1d12584fb560541"
414
+ },
415
+ "src/fastplms/models/esmfold2/esmfold2_mmcif_parsing.py": {
416
+ "size": 16610,
417
+ "sha256": "8ed0fe1afdc15f148509f92f850707b5cb8e9eff019b46552ac7a83c04f3c9b4"
418
+ },
419
+ "src/fastplms/models/esmfold2/esmfold2_molecular_complex.py": {
420
+ "size": 40861,
421
+ "sha256": "fbb5a616fd0a4335c21ea814cdec9c184815effd21521ff980e93ce0b1a86a1e"
422
+ },
423
+ "src/fastplms/models/esmfold2/esmfold2_msa.py": {
424
+ "size": 20888,
425
+ "sha256": "55aaf57d3e0e983971102ae9582aece9e6fd4cc339aed672b61be999ff945087"
426
+ },
427
+ "src/fastplms/models/esmfold2/esmfold2_msa_filter_sequences.py": {
428
+ "size": 4012,
429
+ "sha256": "964f888b71a41974f2ee172a93631c8f3c32f643e67d346ac04d5a27a29e58e5"
430
+ },
431
+ "src/fastplms/models/esmfold2/esmfold2_normalize_coordinates.py": {
432
+ "size": 3030,
433
+ "sha256": "3b3c9854d58f7e498e7b1b6ec2ffed139233f54bb3abcb9b64edc82d1f8aefdc"
434
+ },
435
+ "src/fastplms/models/esmfold2/esmfold2_output.py": {
436
+ "size": 7860,
437
+ "sha256": "eb2dba85fd9368b76d2c5e7c426cc51f4fc67ec9b16e6463dc3eee126db0d0cd"
438
+ },
439
+ "src/fastplms/models/esmfold2/esmfold2_paired_msa.py": {
440
+ "size": 9426,
441
+ "sha256": "7c5147677d05c8c11023c71c7ee95ddc3cd629e95fbe6bb59a1df4cf56b8174e"
442
+ },
443
+ "src/fastplms/models/esmfold2/esmfold2_parsing.py": {
444
+ "size": 3896,
445
+ "sha256": "9404c5d8514281712681c4bb2fbe694420e0b6612a361d1f0186d294e1f1fb5d"
446
+ },
447
+ "src/fastplms/models/esmfold2/esmfold2_predicted_aligned_error.py": {
448
+ "size": 4889,
449
+ "sha256": "eae9a59a5da8d7e54b319619162c235c880666d475ff495cd14d015c0bfa22b1"
450
+ },
451
+ "src/fastplms/models/esmfold2/esmfold2_prepare_input.py": {
452
+ "size": 40736,
453
+ "sha256": "b75323afe401531eb17d4c23454fa024448e0563f8f94ad7adc3f91522a7a27a"
454
+ },
455
+ "src/fastplms/models/esmfold2/esmfold2_processor.py": {
456
+ "size": 13210,
457
+ "sha256": "de878f5a2165951535dd177de9eb8322f35308c612bba6f0363fb825c3d8e1a1"
458
+ },
459
+ "src/fastplms/models/esmfold2/esmfold2_protein_chain.py": {
460
+ "size": 63543,
461
+ "sha256": "601b522c1c4d518e3751edede644e351ce9fff60229ca8029d2f69559f4a5812"
462
+ },
463
+ "src/fastplms/models/esmfold2/esmfold2_protein_complex.py": {
464
+ "size": 52765,
465
+ "sha256": "cb68d3ad8491390961e95dcb7f0726a6d249666f95fc046f233c3d56aa0a9bd5"
466
+ },
467
+ "src/fastplms/models/esmfold2/esmfold2_protein_structure.py": {
468
+ "size": 9884,
469
+ "sha256": "dddf87923bca888605cf84c89c11a24dcf6f500ec99bf6ad545faa5f9ca04998"
470
+ },
471
+ "src/fastplms/models/esmfold2/esmfold2_residue_constants.py": {
472
+ "size": 32920,
473
+ "sha256": "9c2fe8f454300d7a676fc7160003232dd9ff926e2b48289853c2636ac9ba2d4b"
474
+ },
475
+ "src/fastplms/models/esmfold2/esmfold2_sequential_dataclass.py": {
476
+ "size": 3929,
477
+ "sha256": "453657d127b6a78371f760fcf0cedfeaef8bb5024eeb7a1ffa66742323c279cf"
478
+ },
479
+ "src/fastplms/models/esmfold2/esmfold2_system.py": {
480
+ "size": 1602,
481
+ "sha256": "5916250a3fa873983f06af668823c940813802a3db576bccf4e3343103564b7f"
482
+ },
483
+ "src/fastplms/models/esmfold2/esmfold2_types.py": {
484
+ "size": 876,
485
+ "sha256": "2ab7e6fe0e228f6c579ed4aa96a097f9904bd3c11253434994be7b04952f35bb"
486
+ },
487
+ "src/fastplms/models/esmfold2/esmfold2_utils_types.py": {
488
+ "size": 1060,
489
+ "sha256": "d00f3cd100b0151859831cd187d7fdb49d3aeda631544205d2ca63bb7d710879"
490
+ },
491
+ "src/fastplms/models/esmfold2/modeling_esmfold2.py": {
492
+ "size": 87462,
493
+ "sha256": "3bbdbe7c502a1b61926e0b3b2aee148deabaa97537dbc58622e8e10cca76b9a7"
494
+ },
495
+ "src/fastplms/models/esmfold2/modeling_esmfold2_classification.py": {
496
+ "size": 9423,
497
+ "sha256": "5f46ab5bac2359bf541551967b2652545892467456042023819a7f5cb9036388"
498
+ },
499
+ "src/fastplms/models/esmfold2/modeling_esmfold2_common.py": {
500
+ "size": 125129,
501
+ "sha256": "ec43392fce2a5d4b4bf258c4239a7d690b79d2197fb1f21ceb1059e78951ba44"
502
+ },
503
+ "src/fastplms/models/esmfold2/modeling_esmfold2_experimental.py": {
504
+ "size": 49957,
505
+ "sha256": "9e28a4b6d6c4d31b7eabae377fe11f65f50fb2b6a1746146c1cd1ba0ca595bf6"
506
+ },
507
+ "src/fastplms/models/esmfold2/protein_utils.py": {
508
+ "size": 8093,
509
+ "sha256": "b7f40b19dc2c20e144b8fe3ccd0dbb2ec846526d015d6c8c922802d741be1f46"
510
+ },
511
+ "src/fastplms/models/esmfold2/reproducibility.py": {
512
+ "size": 1743,
513
+ "sha256": "18f13e266c9db67093fe756ca07bb93bb136a8e7b783a12d46bab82d0c69778d"
514
+ },
515
+ "src/fastplms/models/ttt.py": {
516
+ "size": 37758,
517
+ "sha256": "bbcd0d46cb2e1815f86cdb3d710fb89b2539a18d8ff03ce9306e88ca72d70309"
518
+ },
519
+ "src/fastplms/registry.py": {
520
+ "size": 68948,
521
+ "sha256": "c370419b34fc86a32c757b26601847be413a6b24384d435934d0431b99823d92"
522
+ },
523
+ "src/fastplms/runtime.py": {
524
+ "size": 2541,
525
+ "sha256": "9521c37fcd168bf9a4137277fb73672403ccf30d70d4845aa879fb22f42ddeb6"
526
+ },
527
+ "tools/confidence/__init__.py": {
528
+ "size": 58,
529
+ "sha256": "906ebf189faecc0e4db0667e06235ddedb5f55ccb8764007cefb94bebab4d1e2"
530
+ },
531
+ "tools/confidence/acceptance.py": {
532
+ "size": 11760,
533
+ "sha256": "8039c46a56731d560a50d6ea256f4b3241cd899049b40aaa23d01e5aa73246c6"
534
+ },
535
+ "tools/confidence/artifact_validation.py": {
536
+ "size": 4870,
537
+ "sha256": "39a762846cce12596318a84db9858ba4699763639a0c2d78a9e0a1c912b310ba"
538
+ },
539
+ "tools/confidence/budget.py": {
540
+ "size": 534,
541
+ "sha256": "5ff3392d24db6569c8104ac614f3318a1cdba57c09cc9b3207ebd7e936f974d2"
542
+ },
543
+ "tools/confidence/cache.py": {
544
+ "size": 24237,
545
+ "sha256": "0fb7cc37ffc340fd16c61f44cba3f7462593638aef3937f12fe8c4ff791001cf"
546
+ },
547
+ "tools/confidence/campaign.py": {
548
+ "size": 6460,
549
+ "sha256": "a4e91bfa6da4db22526a2ea21a671117d033c014158410c4678fa21593d8a821"
550
+ },
551
+ "tools/confidence/config.py": {
552
+ "size": 1708,
553
+ "sha256": "342e6fdf9cd8a7cd7f3f455e519b3ebd63132001b1c95e8ad4b8c5cf05077d9f"
554
+ },
555
+ "tools/confidence/data.py": {
556
+ "size": 33870,
557
+ "sha256": "acdbad582e458d05946b6403e2f42db59fe48a5b970dd01123be2951aea2bdaa"
558
+ },
559
+ "tools/confidence/evaluation.py": {
560
+ "size": 15661,
561
+ "sha256": "ef00a4ce9a27f2561689496e114cbc6d160bc186e6c1214cbb7ff1be23733992"
562
+ },
563
+ "tools/confidence/experiment_artifacts.py": {
564
+ "size": 22122,
565
+ "sha256": "91af0497832eca1ba75c1485406e1e7bae4f6552123aff70b2f9c4be9304edff"
566
+ },
567
+ "tools/confidence/gpu_benchmark.py": {
568
+ "size": 5686,
569
+ "sha256": "cb95a65622fd21bb4f31a981e914ff1f2c38a956f5c1e564c3038c7db25bed82"
570
+ },
571
+ "tools/confidence/host.py": {
572
+ "size": 24692,
573
+ "sha256": "846960995b4f93a1f1e7215214789a61a70cdc1d8daa3f5f6c8cc628f20c6929"
574
+ },
575
+ "tools/confidence/labels.py": {
576
+ "size": 11283,
577
+ "sha256": "6eb50c11860f6b379f257586b7918dcfe4ef60b1fb84268c1909ea95bafcf7dd"
578
+ },
579
+ "tools/confidence/launch.py": {
580
+ "size": 9672,
581
+ "sha256": "472445e07620269e367350ab897f33ca174d1e03cafbcc026c8e4496a9d0ebcc"
582
+ },
583
+ "tools/confidence/launch_v2.py": {
584
+ "size": 1061,
585
+ "sha256": "a161789a040640faceb31ba8e8b78ebcde5b568505d23f10cac684b744e6ebdc"
586
+ },
587
+ "tools/confidence/metrics.py": {
588
+ "size": 15585,
589
+ "sha256": "cb9fca1f26616bc8ac0330976f8d52cede3b5ef61769221821e4de202e93b36a"
590
+ },
591
+ "tools/confidence/migration.py": {
592
+ "size": 9152,
593
+ "sha256": "ce4d841e236c0e984fa06edb25d22fbf3c782b9d779b98127032da7425e85982"
594
+ },
595
+ "tools/confidence/modal_app.py": {
596
+ "size": 11872,
597
+ "sha256": "bd543c788a3e07b76b368dec966ac62f41880437b8697fd443171d3bbd4c146b"
598
+ },
599
+ "tools/confidence/modal_gpu_benchmark.py": {
600
+ "size": 3916,
601
+ "sha256": "a359c911c70d10c82c41e186ec53f1ae66063fb7cc74a5beaf09b97b6f525c0b"
602
+ },
603
+ "tools/confidence/modal_resume.py": {
604
+ "size": 4021,
605
+ "sha256": "3a0f6615180d1040e146a5d1e1702ee1bb3446cb65cb86e00113e3a80de97eaa"
606
+ },
607
+ "tools/confidence/modal_v2.py": {
608
+ "size": 9844,
609
+ "sha256": "bfd4180dbf152fd4a3a2ed01d9049489ce15798f1b4333ea8d4933636508d864"
610
+ },
611
+ "tools/confidence/online_smoke.py": {
612
+ "size": 17889,
613
+ "sha256": "a95b72b4ba244a9289dbcfecfc3201d4c033b3e41c2d6fe18a3b0ffd5a9b8f0a"
614
+ },
615
+ "tools/confidence/online_training.py": {
616
+ "size": 32956,
617
+ "sha256": "9326012b780bd739841f930c7fb08431e1b615b334581376a006c9b7fa9d44a4"
618
+ },
619
+ "tools/confidence/packaging.py": {
620
+ "size": 8909,
621
+ "sha256": "efd50d289d0a35e6634428ad37ed0812c5a00607924fb3159796b95e5a70a9bb"
622
+ },
623
+ "tools/confidence/ranking.py": {
624
+ "size": 3677,
625
+ "sha256": "32db0f3f46d8dc7770ad8a280169ed8fb2888024dd0d66964c3d7f0ab97de578"
626
+ },
627
+ "tools/confidence/recompute.py": {
628
+ "size": 10462,
629
+ "sha256": "e19c11e77632e70ca0d4dd9eb66dff0a0e04e4a5bb4db36148e6532edc10e225"
630
+ },
631
+ "tools/confidence/release.py": {
632
+ "size": 8949,
633
+ "sha256": "3ea71eac204b6c8f3c8783894544a06cd8101b0d23c1c3e5e4b4735fcce25201"
634
+ },
635
+ "tools/confidence/rollouts.py": {
636
+ "size": 21348,
637
+ "sha256": "1dad3e3e0dca8d8aa56070efd7b23dd4ffefd4109aab33c2f05843e87f940f1d"
638
+ },
639
+ "tools/confidence/selection.py": {
640
+ "size": 1003,
641
+ "sha256": "dd0e9c87dd48f63159b997e801bb0595f1ebf5c9eaed1f5b2bab1a3543054cf1"
642
+ },
643
+ "tools/confidence/splits.py": {
644
+ "size": 5417,
645
+ "sha256": "3ea939c6b6621c3e6e3eea14a1a08c682936fbebcb4c84a31ede7318f30fdbf4"
646
+ },
647
+ "tools/confidence/ssh.py": {
648
+ "size": 7530,
649
+ "sha256": "e80d0904563e71c343742e31093ba812c173039ac255317caf471c1c069cf538"
650
+ },
651
+ "tools/confidence/structure_metrics.py": {
652
+ "size": 13711,
653
+ "sha256": "a0b8825b367d0112b5a5e8acd06e66441067b049bfe1932df9390ec92c26d71b"
654
+ },
655
+ "tools/confidence/target_pool.py": {
656
+ "size": 11433,
657
+ "sha256": "fee32a81939c31276fce9a6e2dedd68ade5b135eb3a3e345f02ec6f4d523377c"
658
+ },
659
+ "tools/confidence/target_splits.py": {
660
+ "size": 8602,
661
+ "sha256": "15dcec9e83cda07562231bcc13212d7bce47303c8e7c94d9297e2a814bd62946"
662
+ },
663
+ "tools/confidence/test_evaluation.py": {
664
+ "size": 16800,
665
+ "sha256": "6a9998a1e11d325c16b21ef47d3abdc89f2ec7a8a1d212994577191ef10fceca"
666
+ },
667
+ "tools/confidence/training.py": {
668
+ "size": 37010,
669
+ "sha256": "e87056dfcf26cd98b4c42b191154f8bafe63622d3574db2220d0cc1c32399069"
670
+ },
671
+ "tools/confidence/v2_analysis.py": {
672
+ "size": 9958,
673
+ "sha256": "d6c41100acacfad1922ad43aa9b453ffcead3c36876230b80ebe0ddbffa4121e"
674
+ },
675
+ "tools/confidence/v2_campaign.py": {
676
+ "size": 7959,
677
+ "sha256": "1af9e0b526b2e0b0dd2cfcb6317551782c8b8a7576662eb4c85dcaf286f387d8"
678
+ },
679
+ "tools/confidence/v2_records.py": {
680
+ "size": 2110,
681
+ "sha256": "57a5be646cc29637b36732bf3927115a8f879cf0d91d82b26d5b850628ae86da"
682
+ },
683
+ "tools/confidence/workflow.py": {
684
+ "size": 12886,
685
+ "sha256": "abe8624dd5b980dcac43864e19649a4058bfed8fb8207d9014b0f50decadb1db"
686
+ },
687
+ "tools/execution/__init__.py": {
688
+ "size": 77,
689
+ "sha256": "1aa67ededb225e478f19423c2e70deacfd00a4734d6116c8ccc6eafb4a6fd4f8"
690
+ },
691
+ "tools/execution/budget.py": {
692
+ "size": 5146,
693
+ "sha256": "7bde890c6dad647d23208460085f92b93d6f9e497a85b5cb0b6e1a5c33514534"
694
+ },
695
+ "tools/execution/pricing.py": {
696
+ "size": 611,
697
+ "sha256": "a1758c1a0df12cb08612c40167a9df87975abb2c170d227ccf775009dbfb3d80"
698
+ },
699
+ "tools/execution/source.py": {
700
+ "size": 6786,
701
+ "sha256": "2dd3694f5975f571db741084ac1d56b6dd693818ef323f013dae21e8bbde7339"
702
+ }
703
+ }
704
+ },
705
+ "checkpoint_files": {
706
+ "best-ema.safetensors": {
707
+ "size": 31082180,
708
+ "sha256": "e84726a050722e1b722712c87d17a5388bd3699e2520e4a59abb1d828dfb8de7"
709
+ },
710
+ "final-ema.safetensors": {
711
+ "size": 31082180,
712
+ "sha256": "e84726a050722e1b722712c87d17a5388bd3699e2520e4a59abb1d828dfb8de7"
713
+ }
714
+ }
715
+ }
confidence-v2/v2-reproduction-20260922/runs/esmfold2_600/v2/wandb-id.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ 820d2cfa56c0