Canonical embedding sequences v1: full per-token rows for Atlas's 330,937 proteins only

README.md

@@ -14,7 +14,7 @@ dataset_info:
   - {name: sequence, dtype: string}
   - {name: full, dtype: bool}
   splits:
-  - {name: train, num_examples: 3567465}
+  - {name: train, num_examples: 3567544}
 ---
 # Canonical embedding sequences
 
@@ -27,9 +27,9 @@ labels, pairs, source-membership columns or biological safety classification.
 
 | Quantity | Count |
 |---|---:|
-| Sequences | 3,567,465 |
-| Full per-token embeddings required | 330,783 |
-| Pooled only | 3,236,682 |
+| Sequences | 3,567,544 |
+| Full per-token embeddings required | 330,937 |
+| Pooled only | 3,236,607 |
 
 ## Homology leakage
 
@@ -43,7 +43,7 @@ the whole inventory and supplies no model evaluation or leakage guarantee.
 3. Removed ASCII whitespace and uppercased letters without rewriting residues; deduplicated by SHA-256.
 4. Combined full-embedding requirements with boolean OR and verified all source coverage and written rows.
 5. Appended the proteins of the Atlas v3 interaction corpus the list lacked, and required full per-token embeddings for every one of its proteins.
-6. Required full per-token embeddings for the proteins of the Atlas datasets only (PPI, PLI and CAMP: ppi_experimental_v1, atlas_v3_ppi, atlas_v3_balanced_ppi, bernett_gold_ppi_2, flock_ppi, pli_experimental_v2, annotation_experimental_v2), appending those the list lacked; every other protein needs pooled embeddings only (2026-10-19).
+6. Required full per-token embeddings for the proteins of the Atlas datasets only (PPI, PLI and CAMP: ppi_experimental_v1, atlas_v3_ppi, atlas_v3_balanced_ppi, bernett_gold_ppi, bernett_gold_ppi_2, flock_ppi, pli_experimental_v2, annotation_experimental_v2), appending those the list lacked; every other protein needs pooled embeddings only (2026-10-19).
 
 ## Columns
 

sequences.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:a795299b7ed2609674221ba6c17e7785e7d6db442762365bcd8859050751dcd4
-size 716365788
+oid sha256:5939d8d503f61b365c85891f32598ab8eb38dc7fd1bdcab6c39681a3fc221c57
+size 716402686