Canonical embedding sequences v1: append 71,042 Atlas v3 interaction proteins

71,042 proteins appended and 6,247 existing rows now require full per-token embeddings; every Atlas v3 compiled protein is a full row.

README.md

@@ -14,7 +14,7 @@ dataset_info:
   - {name: sequence, dtype: string}
   - {name: full, dtype: bool}
   splits:
-  - {name: train, num_examples: 3480520, num_bytes: 1319880549}
+  - {name: train, num_examples: 3551562}
 ---
 # Canonical embedding sequences
 
@@ -27,9 +27,9 @@ labels, pairs, source-membership columns or biological safety classification.
 
 | Quantity | Count |
 |---|---:|
-| Sequences | 3,480,520 |
-| Full per-token embeddings required | 775,186 |
-| Pooled only | 2,705,334 |
+| Sequences | 3,551,562 |
+| Full per-token embeddings required | 852,475 |
+| Pooled only | 2,699,087 |
 
 ## Homology leakage
 
@@ -42,6 +42,7 @@ the whole inventory and supplies no model evaluation or leakage guarantee.
 2. Read all protein columns of the selected datasets at immutable revisions, including both chains of pairs.
 3. Removed ASCII whitespace and uppercased letters without rewriting residues; deduplicated by SHA-256.
 4. Combined full-embedding requirements with boolean OR and verified all source coverage and written rows.
+5. Appended the proteins of the Atlas v3 interaction corpus the list lacked, and required full per-token embeddings for every one of its proteins.
 
 ## Columns
 

sequences.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:eb164f0033991a9a2011f811c3dcb325963c97119a8e6416d2b5f92e7238cce5
-size 702636328
+oid sha256:d775c3d4d48be7697ccaa48aece9209feb30c3fbf9a88487f9c940e37c635f02
+size 711155614