Datasets:
Publish current dataset release
Browse filesCo-authored-by: paumateo <paumateo@users.noreply.huggingface.co>
- .gitattributes +60 -0
- NOTICE.md +17 -0
- README.md +70 -0
- data/test.parquet +3 -0
- data/train.parquet +3 -0
- data/val.parquet +3 -0
- metadata.json +29 -0
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NOTICE.md
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# Source and license notices: HIV
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## NCI AIDS Antiviral Screen
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Source: https://wiki.nci.nih.gov/display/NCIDTPdata/AIDS+Antiviral+Screen+Data
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Attribution: National Cancer Institute Developmental Therapeutics Program, AIDS Antiviral Screen (May 2004 release). MoleculeNet: Wu et al., DOI 10.1039/C7SC02664A.
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Source terms: https://www.cancer.gov/policies/copyright-reuse
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Credit the National Cancer Institute as the source. The DTP/NCI PubChem source record provides the NCI reuse terms.
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## Modifications
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Experimentally measured abilities of small molecules to inhibit HIV replication. Binary classification task. Features: Morgan fingerprints (radius=2). Split: scaffold-based 70/15/15 (DeepChem ScaffoldSplitter).
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TabBioMed preprocessing and stored benchmark partitions are described in metadata.json and https://github.com/AI-sandbox/TabBioMed. No original author endorsement is implied.
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README.md
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---
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pretty_name: HIV
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task_categories:
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- tabular-classification
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tags:
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- tabular
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- biomedical
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- benchmark
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- TabBioMed
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- drug-discovery
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- binary
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size_categories:
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- 10K<n<100K
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configs:
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- config_name: default
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data_files:
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- split: train
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path: data/train.parquet
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- split: validation
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path: data/val.parquet
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- split: test
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path: data/test.parquet
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---
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# HIV
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Part of **TabBioMed** (*TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning*), a benchmark of 94 curated biomedical
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tabular datasets. Code, preprocessing and documentation: https://github.com/AI-sandbox/TabBioMed.
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Experimentally measured abilities of small molecules to inhibit HIV replication. Binary classification task. Features: Morgan fingerprints (radius=2). Split: scaffold-based 70/15/15 (DeepChem ScaffoldSplitter).
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| Domain | Task | Samples | Features | Classes |
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|---|---|---|---|---|
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| Drug Discovery | binary | 41,120 | 1,024 | 2 |
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**Splits.** Fixed train/val/test split (28783/6169/6168 rows).
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## Files
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- `data/**.parquet`: one row per sample. `row_idx` is the row index in the original
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TabBioMed array; `f_<i>[_<name>]` are the features (in order); `target` (or `target_<j>`
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for multi-target tasks) is the label. Categorical feature indices (0-based, among the
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features): `[]`. Missing values are stored as nulls.
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- `metadata.json`: TabBioMed task metadata (task type, categorical indices, source, description).
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```python
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from datasets import load_dataset
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ds = load_dataset("TabBioMed/HIV")
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```
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A Croissant (1.1) description with Responsible-AI fields is distributed with the
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TabBioMed release.
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## Source and license
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- [NCI AIDS Antiviral Screen](https://wiki.nci.nih.gov/display/NCIDTPdata/AIDS+Antiviral+Screen+Data). National Cancer Institute Developmental Therapeutics Program, AIDS Antiviral Screen (May 2004 release). MoleculeNet: Wu et al., DOI 10.1039/C7SC02664A. [Source terms](https://www.cancer.gov/policies/copyright-reuse). Credit the National Cancer Institute as the source. The DTP/NCI PubChem source record provides the NCI reuse terms.
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See `NOTICE.md` for attribution and modifications.
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## Citation
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```bibtex
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@inproceedings{tabbiomed2026,
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title = {TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning},
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author = {Mateo Bernad{\'o}, Pau and Polapragada, Saivenkata Nagavyjayanthi and Bonet, David and Arbiol Rakuljic, Pol and Mogas Pladevall, Laia and Comajoan Cara, Mar{\c{c}}al and Gonzalez Ferrer, Jesus and Abante, Jordi and Mas Montserrat, Daniel and Haussler, David and Ioannidis, Alexander G.},
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booktitle = {Advances in Neural Information Processing Systems (NeurIPS), Evaluations and Datasets Track},
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year = {2026}
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}
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```
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data/test.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:e291516735d4eb75316b6ec668ca61ac6afe3329353c8ddc47c44923593cfe68
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size 952467
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data/train.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:928a8d6abd06ec783414673ece443aa0bbe369440acdc7db8123949ee904801d
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size 1988473
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data/val.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:1503367499eb25ae90fda08c0afcfc60ed47c4c1ccd8831a75aa521f5bbe2136
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size 944661
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metadata.json
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{
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"READY": true,
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"name": "HIV",
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"task": "binary",
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"num_classes": 2,
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"cat_idx": [],
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"num_samples": 41120,
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"num_features": 1024,
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"imbalance_ratio": 27.4962,
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"description": "Experimentally measured abilities of small molecules to inhibit HIV replication. Binary classification task. Features: Morgan fingerprints (radius=2). Split: scaffold-based 70/15/15 (DeepChem ScaffoldSplitter).",
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"source": "MoleculeNet (https://moleculenet.org) — loaded via DeepChem.",
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"label": "Drug Discovery",
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"sub_labels": [
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"Biophysics",
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"Fingerprint"
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],
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"license": null,
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"license_url": null,
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"source_licenses": [
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{
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"id": "hiv",
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"title": "NCI AIDS Antiviral Screen",
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"url": "https://wiki.nci.nih.gov/display/NCIDTPdata/AIDS+Antiviral+Screen+Data",
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"license": null,
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"license_url": null,
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"terms_url": "https://www.cancer.gov/policies/copyright-reuse"
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}
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]
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}
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