Datasets:
TabBioMed camera-ready release
Browse files- README.md +96 -0
- data/fold_0/test.parquet +3 -0
- data/fold_0/train.parquet +3 -0
- data/fold_0/val.parquet +3 -0
- data/fold_1/test.parquet +3 -0
- data/fold_1/train.parquet +3 -0
- data/fold_1/val.parquet +3 -0
- data/fold_2/test.parquet +3 -0
- data/fold_2/train.parquet +3 -0
- data/fold_2/val.parquet +3 -0
- data/fold_3/test.parquet +3 -0
- data/fold_3/train.parquet +3 -0
- data/fold_3/val.parquet +3 -0
- data/fold_4/test.parquet +3 -0
- data/fold_4/train.parquet +3 -0
- data/fold_4/val.parquet +3 -0
- feature_names.json +71 -0
- metadata.json +89 -0
README.md
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---
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license: cc-by-4.0
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pretty_name: audiology
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task_categories:
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- tabular-classification
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tags:
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- tabular
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- biomedical
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- benchmark
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- TabBioMed
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- clinical-&-healthcare
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- binary
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size_categories:
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- n<1K
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configs:
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- config_name: default
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data_files:
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- split: fold_0_train
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path: data/fold_0/train.parquet
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- split: fold_0_validation
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path: data/fold_0/val.parquet
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- split: fold_0_test
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path: data/fold_0/test.parquet
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- split: fold_1_train
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path: data/fold_1/train.parquet
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- split: fold_1_validation
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path: data/fold_1/val.parquet
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- split: fold_1_test
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path: data/fold_1/test.parquet
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- split: fold_2_train
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path: data/fold_2/train.parquet
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- split: fold_2_validation
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path: data/fold_2/val.parquet
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- split: fold_2_test
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path: data/fold_2/test.parquet
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- split: fold_3_train
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path: data/fold_3/train.parquet
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- split: fold_3_validation
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path: data/fold_3/val.parquet
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- split: fold_3_test
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path: data/fold_3/test.parquet
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- split: fold_4_train
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path: data/fold_4/train.parquet
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- split: fold_4_validation
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path: data/fold_4/val.parquet
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- split: fold_4_test
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path: data/fold_4/test.parquet
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---
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# audiology
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Part of **TabBioMed** (*TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning*), a benchmark of 94 curated biomedical
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tabular datasets. Code, preprocessing and documentation: https://github.com/AI-sandbox/TabBioMed.
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OpenML Audiology ID 999, version 2: binary classification of the original cochlear_age diagnosis (P, encoded 1) versus all other source diagnoses (N, encoded 0). The P/N mapping is verified against the row-aligned original multiclass release, OpenML ID 7. The negative class includes other hearing disorders and normal ears. Exact duplicate feature rows with agreeing labels are collapsed before splitting; missing categorical measurements are preserved. Evaluation uses five stratified outer folds and three-fold inner cross-validation for hyperparameter selection.
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| Domain | Task | Samples | Features | Classes |
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|---|---|---|---|---|
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| Clinical & Healthcare | binary | 199 | 69 | 2 |
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**Splits.** 5 stored outer cross-validation folds (`data/fold_<i>/`), each with train/val/test files (fold 0: 139/20/40 rows). Every row appears in exactly one outer test fold. HPO in the paper uses inner folds drawn from each outer non-test pool.
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## Files
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- `data/**.parquet`: one row per sample. `row_idx` is the row index in the original
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TabBioMed array; `f_<i>[_<name>]` are the features (in order); `target` (or `target_<j>`
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for multi-target tasks) is the label. Categorical feature indices (0-based, among the
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features): `[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68]`. Missing values are stored as nulls.
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- `metadata.json`: TabBioMed task metadata (task type, categorical indices, source, description).
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- `feature_names.json`: original feature names, in column order.
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```python
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from datasets import load_dataset
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ds = load_dataset("TabBioMed/audiology")
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```
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A Croissant (1.1) description with Responsible-AI fields is distributed with the
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TabBioMed release.
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## Source and license
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Source: OpenML_Dataset_ID_999
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This derived dataset is distributed under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/). Please also
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cite and respect the terms of the original source.
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## Citation
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```bibtex
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@inproceedings{tabbiomed2026,
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title = {TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning},
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author = {Mateo Bernad{\'o}, Pau and Polapragada, Saivenkata Nagavyjayanthi and Bonet, David and Arbiol Rakuljic, Pol and Mogas Pladevall, Laia and Comajoan Cara, Mar{\c{c}}al and Gonzalez Ferrer, Jesus and Abante, Jordi and Mas Montserrat, Daniel and Haussler, David and Ioannidis, Alexander G.},
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booktitle = {Advances in Neural Information Processing Systems (NeurIPS), Evaluations and Datasets Track},
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year = {2026}
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}
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```
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data/fold_1/test.parquet
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data/fold_2/test.parquet
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data/fold_3/test.parquet
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feature_names.json
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[
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| 2 |
+
"age_gt_60",
|
| 3 |
+
"air",
|
| 4 |
+
"airBoneGap",
|
| 5 |
+
"ar_c",
|
| 6 |
+
"ar_u",
|
| 7 |
+
"bone",
|
| 8 |
+
"boneAbnormal",
|
| 9 |
+
"bser",
|
| 10 |
+
"history_buzzing",
|
| 11 |
+
"history_dizziness",
|
| 12 |
+
"history_fluctuating",
|
| 13 |
+
"history_fullness",
|
| 14 |
+
"history_heredity",
|
| 15 |
+
"history_nausea",
|
| 16 |
+
"history_noise",
|
| 17 |
+
"history_recruitment",
|
| 18 |
+
"history_ringing",
|
| 19 |
+
"history_roaring",
|
| 20 |
+
"history_vomiting",
|
| 21 |
+
"late_wave_poor",
|
| 22 |
+
"m_at_2k",
|
| 23 |
+
"m_cond_lt_1k",
|
| 24 |
+
"m_gt_1k",
|
| 25 |
+
"m_m_gt_2k",
|
| 26 |
+
"m_m_sn",
|
| 27 |
+
"m_m_sn_gt_1k",
|
| 28 |
+
"m_m_sn_gt_2k",
|
| 29 |
+
"m_m_sn_gt_500",
|
| 30 |
+
"m_p_sn_gt_2k",
|
| 31 |
+
"m_s_gt_500",
|
| 32 |
+
"m_s_sn",
|
| 33 |
+
"m_s_sn_gt_1k",
|
| 34 |
+
"m_s_sn_gt_2k",
|
| 35 |
+
"m_s_sn_gt_3k",
|
| 36 |
+
"m_s_sn_gt_4k",
|
| 37 |
+
"m_sn_2_3k",
|
| 38 |
+
"m_sn_gt_1k",
|
| 39 |
+
"m_sn_gt_2k",
|
| 40 |
+
"m_sn_gt_3k",
|
| 41 |
+
"m_sn_gt_4k",
|
| 42 |
+
"m_sn_gt_500",
|
| 43 |
+
"m_sn_gt_6k",
|
| 44 |
+
"m_sn_lt_1k",
|
| 45 |
+
"m_sn_lt_2k",
|
| 46 |
+
"m_sn_lt_3k",
|
| 47 |
+
"middle_wave_poor",
|
| 48 |
+
"mod_gt_4k",
|
| 49 |
+
"mod_mixed",
|
| 50 |
+
"mod_s_mixed",
|
| 51 |
+
"mod_s_sn_gt_500",
|
| 52 |
+
"mod_sn",
|
| 53 |
+
"mod_sn_gt_1k",
|
| 54 |
+
"mod_sn_gt_2k",
|
| 55 |
+
"mod_sn_gt_3k",
|
| 56 |
+
"mod_sn_gt_4k",
|
| 57 |
+
"mod_sn_gt_500",
|
| 58 |
+
"notch_4k",
|
| 59 |
+
"notch_at_4k",
|
| 60 |
+
"o_ar_c",
|
| 61 |
+
"o_ar_u",
|
| 62 |
+
"s_sn_gt_1k",
|
| 63 |
+
"s_sn_gt_2k",
|
| 64 |
+
"s_sn_gt_4k",
|
| 65 |
+
"speech",
|
| 66 |
+
"static_normal",
|
| 67 |
+
"tymp",
|
| 68 |
+
"viith_nerve_signs",
|
| 69 |
+
"wave_V_delayed",
|
| 70 |
+
"waveform_ItoV_prolonged"
|
| 71 |
+
]
|
metadata.json
ADDED
|
@@ -0,0 +1,89 @@
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|
| 1 |
+
{
|
| 2 |
+
"READY": true,
|
| 3 |
+
"name": "audiology",
|
| 4 |
+
"task": "binary",
|
| 5 |
+
"num_classes": 2,
|
| 6 |
+
"cat_idx": [
|
| 7 |
+
0,
|
| 8 |
+
1,
|
| 9 |
+
2,
|
| 10 |
+
3,
|
| 11 |
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4,
|
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5,
|
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|
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+
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|
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|
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9,
|
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|
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+
11,
|
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+
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|
| 20 |
+
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|
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+
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|
| 22 |
+
15,
|
| 23 |
+
16,
|
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+
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|
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+
18,
|
| 26 |
+
19,
|
| 27 |
+
20,
|
| 28 |
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|
| 29 |
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22,
|
| 30 |
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23,
|
| 31 |
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24,
|
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25,
|
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|
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|
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|
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|
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|
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32,
|
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|
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|
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|
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|
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|
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|
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|
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+
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|
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+
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|
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+
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|
| 50 |
+
43,
|
| 51 |
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|
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|
| 53 |
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|
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+
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|
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+
48,
|
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+
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|
| 57 |
+
50,
|
| 58 |
+
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|
| 59 |
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|
| 60 |
+
53,
|
| 61 |
+
54,
|
| 62 |
+
55,
|
| 63 |
+
56,
|
| 64 |
+
57,
|
| 65 |
+
58,
|
| 66 |
+
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|
| 67 |
+
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|
| 68 |
+
61,
|
| 69 |
+
62,
|
| 70 |
+
63,
|
| 71 |
+
64,
|
| 72 |
+
65,
|
| 73 |
+
66,
|
| 74 |
+
67,
|
| 75 |
+
68
|
| 76 |
+
],
|
| 77 |
+
"num_samples": 199,
|
| 78 |
+
"num_features": 69,
|
| 79 |
+
"imbalance_ratio": 3.5227,
|
| 80 |
+
"description": "OpenML Audiology ID 999, version 2: binary classification of the original cochlear_age diagnosis (P, encoded 1) versus all other source diagnoses (N, encoded 0). The P/N mapping is verified against the row-aligned original multiclass release, OpenML ID 7. The negative class includes other hearing disorders and normal ears. Exact duplicate feature rows with agreeing labels are collapsed before splitting; missing categorical measurements are preserved. Evaluation uses five stratified outer folds and three-fold inner cross-validation for hyperparameter selection.",
|
| 81 |
+
"source": "OpenML_Dataset_ID_999",
|
| 82 |
+
"label": "clinical & healthcare",
|
| 83 |
+
"split_strategy": "cv",
|
| 84 |
+
"target_mapping": {
|
| 85 |
+
"0": "other source diagnoses (N)",
|
| 86 |
+
"1": "cochlear_age (P)"
|
| 87 |
+
},
|
| 88 |
+
"url": "https://www.openml.org/d/999"
|
| 89 |
+
}
|