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TabBioMed camera-ready release

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README.md ADDED
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+ ---
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+ license: cc-by-4.0
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+ pretty_name: audiology
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+ task_categories:
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+ - tabular-classification
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+ tags:
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+ - tabular
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+ - biomedical
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+ - benchmark
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+ - TabBioMed
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+ - clinical-&-healthcare
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+ - binary
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+ size_categories:
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+ - n<1K
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+ configs:
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+ - config_name: default
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+ data_files:
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+ - split: fold_0_train
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+ path: data/fold_0/train.parquet
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+ - split: fold_0_validation
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+ path: data/fold_0/val.parquet
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+ - split: fold_0_test
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+ path: data/fold_0/test.parquet
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+ - split: fold_1_train
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+ path: data/fold_1/train.parquet
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+ - split: fold_1_validation
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+ path: data/fold_1/val.parquet
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+ - split: fold_1_test
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+ path: data/fold_1/test.parquet
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+ - split: fold_2_train
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+ path: data/fold_2/train.parquet
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+ - split: fold_2_validation
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+ path: data/fold_2/val.parquet
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+ - split: fold_2_test
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+ path: data/fold_2/test.parquet
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+ - split: fold_3_train
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+ path: data/fold_3/train.parquet
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+ - split: fold_3_validation
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+ path: data/fold_3/val.parquet
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+ - split: fold_3_test
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+ path: data/fold_3/test.parquet
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+ - split: fold_4_train
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+ path: data/fold_4/train.parquet
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+ - split: fold_4_validation
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+ path: data/fold_4/val.parquet
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+ - split: fold_4_test
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+ path: data/fold_4/test.parquet
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+ ---
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+
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+ # audiology
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+
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+ Part of **TabBioMed** (*TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning*), a benchmark of 94 curated biomedical
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+ tabular datasets. Code, preprocessing and documentation: https://github.com/AI-sandbox/TabBioMed.
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+
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+ OpenML Audiology ID 999, version 2: binary classification of the original cochlear_age diagnosis (P, encoded 1) versus all other source diagnoses (N, encoded 0). The P/N mapping is verified against the row-aligned original multiclass release, OpenML ID 7. The negative class includes other hearing disorders and normal ears. Exact duplicate feature rows with agreeing labels are collapsed before splitting; missing categorical measurements are preserved. Evaluation uses five stratified outer folds and three-fold inner cross-validation for hyperparameter selection.
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+
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+ | Domain | Task | Samples | Features | Classes |
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+ |---|---|---|---|---|
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+ | Clinical & Healthcare | binary | 199 | 69 | 2 |
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+
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+ **Splits.** 5 stored outer cross-validation folds (`data/fold_<i>/`), each with train/val/test files (fold 0: 139/20/40 rows). Every row appears in exactly one outer test fold. HPO in the paper uses inner folds drawn from each outer non-test pool.
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+
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+ ## Files
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+
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+ - `data/**.parquet`: one row per sample. `row_idx` is the row index in the original
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+ TabBioMed array; `f_<i>[_<name>]` are the features (in order); `target` (or `target_<j>`
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+ for multi-target tasks) is the label. Categorical feature indices (0-based, among the
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+ features): `[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68]`. Missing values are stored as nulls.
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+ - `metadata.json`: TabBioMed task metadata (task type, categorical indices, source, description).
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+ - `feature_names.json`: original feature names, in column order.
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+
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+ ```python
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+ from datasets import load_dataset
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+ ds = load_dataset("TabBioMed/audiology")
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+ ```
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+
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+ A Croissant (1.1) description with Responsible-AI fields is distributed with the
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+ TabBioMed release.
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+
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+ ## Source and license
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+
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+ Source: OpenML_Dataset_ID_999
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+
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+ This derived dataset is distributed under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/). Please also
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+ cite and respect the terms of the original source.
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+
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+ ## Citation
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+
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+ ```bibtex
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+ @inproceedings{tabbiomed2026,
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+ title = {TabBioMed: A Large-Scale Benchmark for Biomedical Tabular Learning},
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+ author = {Mateo Bernad{\'o}, Pau and Polapragada, Saivenkata Nagavyjayanthi and Bonet, David and Arbiol Rakuljic, Pol and Mogas Pladevall, Laia and Comajoan Cara, Mar{\c{c}}al and Gonzalez Ferrer, Jesus and Abante, Jordi and Mas Montserrat, Daniel and Haussler, David and Ioannidis, Alexander G.},
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+ booktitle = {Advances in Neural Information Processing Systems (NeurIPS), Evaluations and Datasets Track},
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+ year = {2026}
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+ }
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+ ```
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+ [
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+ "age_gt_60",
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+ "air",
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+ "airBoneGap",
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+ "ar_c",
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+ "ar_u",
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+ "bone",
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+ "boneAbnormal",
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+ "bser",
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+ "history_buzzing",
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+ "history_dizziness",
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+ "history_fluctuating",
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+ "history_fullness",
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+ "history_heredity",
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+ "history_nausea",
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+ "history_noise",
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+ "history_recruitment",
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+ "history_ringing",
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+ "history_roaring",
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+ "history_vomiting",
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+ "late_wave_poor",
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+ "m_at_2k",
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+ "m_cond_lt_1k",
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+ "m_gt_1k",
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+ "m_m_gt_2k",
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+ "m_m_sn",
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+ "m_m_sn_gt_1k",
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+ "m_m_sn_gt_2k",
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+ "m_m_sn_gt_500",
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+ "m_p_sn_gt_2k",
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+ "m_s_gt_500",
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+ "m_s_sn",
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+ "m_s_sn_gt_1k",
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+ "m_s_sn_gt_2k",
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+ "m_s_sn_gt_3k",
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+ "m_s_sn_gt_4k",
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+ "m_sn_2_3k",
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+ "m_sn_gt_1k",
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+ "m_sn_gt_2k",
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+ "m_sn_gt_3k",
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+ "m_sn_gt_4k",
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+ "m_sn_gt_500",
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+ "m_sn_gt_6k",
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+ "m_sn_lt_1k",
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+ "m_sn_lt_2k",
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+ "m_sn_lt_3k",
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+ "middle_wave_poor",
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+ "mod_gt_4k",
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+ "mod_mixed",
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+ "mod_s_mixed",
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+ "mod_s_sn_gt_500",
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+ "mod_sn",
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+ "mod_sn_gt_1k",
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+ "mod_sn_gt_2k",
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+ "mod_sn_gt_3k",
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+ "mod_sn_gt_4k",
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+ "mod_sn_gt_500",
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+ "notch_4k",
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+ "notch_at_4k",
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+ "o_ar_c",
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+ "o_ar_u",
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+ "s_sn_gt_1k",
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+ "s_sn_gt_2k",
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+ "s_sn_gt_4k",
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+ "speech",
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+ "static_normal",
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+ "tymp",
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+ "viith_nerve_signs",
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+ "wave_V_delayed",
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+ "waveform_ItoV_prolonged"
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+ ]
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+ {
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+ "READY": true,
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+ "name": "audiology",
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+ "task": "binary",
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+ "num_classes": 2,
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+ ],
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+ "num_samples": 199,
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+ "num_features": 69,
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+ "imbalance_ratio": 3.5227,
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+ "description": "OpenML Audiology ID 999, version 2: binary classification of the original cochlear_age diagnosis (P, encoded 1) versus all other source diagnoses (N, encoded 0). The P/N mapping is verified against the row-aligned original multiclass release, OpenML ID 7. The negative class includes other hearing disorders and normal ears. Exact duplicate feature rows with agreeing labels are collapsed before splitting; missing categorical measurements are preserved. Evaluation uses five stratified outer folds and three-fold inner cross-validation for hyperparameter selection.",
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+ "source": "OpenML_Dataset_ID_999",
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+ "label": "clinical & healthcare",
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+ "split_strategy": "cv",
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+ "target_mapping": {
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+ "0": "other source diagnoses (N)",
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+ "1": "cochlear_age (P)"
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+ },
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+ "url": "https://www.openml.org/d/999"
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+ }