Sync GitHub main 1408cd46da530c736b21737f04a69bf078278c17 (part 3)

research/generated/CATALOG_AUDIT_REPORT.json

@@ -2,8 +2,8 @@
   "status": "clean",
   "audit": {
     "clean": false,
-    "question_reference_count": 4911,
-    "hypothesis_reference_count": 3607,
+    "question_reference_count": 4923,
+    "hypothesis_reference_count": 3627,
     "missing_questions": [
       "RQ-AI-DESIGN-001",
       "RQ-AI-EFF-001",

research/generated/CATALOG_AUDIT_REPORT.md

@@ -5,8 +5,8 @@
 The canonical ResearchRegistry remains authoritative. Historical/design references and test-only fixtures are listed with explicit reasons; an unknown missing identifier fails CI.
 
 ## Summary
-- Question references: 4911
-- Hypothesis references: 3607
+- Question references: 4923
+- Hypothesis references: 3627
 - Missing questions: 28
 - Missing hypotheses: 24
 - Registry link issues: 0

research/generated/EVIDENCE_MATRIX.md

@@ -78,7 +78,7 @@ RQ-Status und Claim-Status sind unterschiedliche wissenschaftliche Zustände und
 | `RQ-WEL-101` | open | `H-WEL-101-A` | — | — | 1 | — | — | offen |
 | `RQ-WEL-102` | open | `H-WEL-102-A` | — | — | 2 | — | — | offen |
 | `RQ-WEL-103` | open | `H-WEL-103-A` | — | — | 4 | — | — | offen |
-| `RQ-EMB-002` | open | `H-EMB-002-A` | — | — | 3 | `EXP-BATCH-20260909223705-69`, `EXP-BATCH-20260914074039-69`, `EXP-EMB002A-PROPRIOCEPTION-V3-20260920`, `EXP-EMP-20260910` | — | offen |
+| `RQ-EMB-002` | open | `H-EMB-002-A`, `H-EMB-002-B` | — | — | 3 | `EXP-BATCH-20260909223705-69`, `EXP-BATCH-20260914074039-69`, `EXP-EMB002A-DELAY-SWEEP-V4-20260924`, `EXP-EMB002A-PROPRIOCEPTION-V3-20260920`, `EXP-EMB002B-TRANSITION-V5-20260924`, `EXP-EMP-20260910` | — | offen |
 | `RQ-EMB-003` | open | `H-EMB-003-A` | — | — | 3 | — | — | offen |
 | `RQ-EMB-004` | open | `H-EMB-004-A` | — | — | 3 | `EXP-BATCH-20260909223705-71`, `EXP-BATCH-20260914074039-71`, `EXP-EMP-20260910` | — | offen |
 | `RQ-EMB-007` | open | `H-EMB-007-A` | — | — | 3 | — | — | offen |

research/generated/OPEN_QUESTIONS.md

@@ -1072,6 +1072,7 @@ Die folgenden Forschungsfragen sind noch offen und warten auf experimentelle Evi
 
 **Hypothesen:**
 - `H-EMB-002-A`: Die mittlere quadratische Zielabweichung ist bei intakter Propriozeption niedriger als bei fehlender oder um 20 Ticks verzoegerter Propriozeption.
+- `H-EMB-002-B`: In der festen synthetischen Sechs-Neuronen-Gelenk-Fixture bleiben 50 und 60 Ticks propriozeptive Verzoegerung innerhalb eines vorab definierten Toleranzbands von +0,01 rad mittlerer Tracking-RMSE gegenueber delay_0, waehrend 90 und 100 Ticks die mittlere RMSE um mindestens +0,03 rad erhoehen und delay_0 in mindestens 90 Prozent der gepaarten Seeds den niedrigeren Fehler aufweist.
 
 ---
 

research/generated/RESEARCH_CATALOG.md

@@ -5,7 +5,7 @@
 ## Übersicht
 
 - **Forschungsfragen:** 108
-- **Hypothesen:** 115
+- **Hypothesen:** 116
 - **Claims:** 9
 - **Literaturquellen:** 56
 
@@ -413,6 +413,7 @@
 
 **Hypothesen:**
 - `H-EMB-002-A`: Die mittlere quadratische Zielabweichung ist bei intakter Propriozeption niedriger als bei fehlender oder um 20 Ticks verzoegerter Propriozeption. *(untested)*
+- `H-EMB-002-B`: In der festen synthetischen Sechs-Neuronen-Gelenk-Fixture bleiben 50 und 60 Ticks propriozeptive Verzoegerung innerhalb eines vorab definierten Toleranzbands von +0,01 rad mittlerer Tracking-RMSE gegenueber delay_0, waehrend 90 und 100 Ticks die mittlere RMSE um mindestens +0,03 rad erhoehen und delay_0 in mindestens 90 Prozent der gepaarten Seeds den niedrigeren Fehler aufweist. *(untested)*
 
 **Literatur:**
 - `SRC-CONN-SHIU-2024`: Shiu, P. K. and others et al. (2024)

research/generated/verification/determinism_infrastructure.json

@@ -1,12 +1,12 @@
 {
   "schema_version": 1,
   "status": "verified",
-  "test_run_head": "ed290195dc078f68ad252eb2accca1f82aaa1873",
-  "tested_commit": "ed290195dc078f68ad252eb2accca1f82aaa1873",
-  "tested_tree_digest": "c6e64d9d4043e250071170efc11a3a64086c63d25a94f7e79d38fc913d094cdc",
+  "test_run_head": "44fc2362f8723dca54cd993a1b80639f611c3486",
+  "tested_commit": "44fc2362f8723dca54cd993a1b80639f611c3486",
+  "tested_tree_digest": "f8393956170a5454cac3415751166fd7993c37ac9993ad73d922e8cf80a30ffa",
   "scope": "restore_determinism",
   "scope_digest": "62281a2f6208f9eabd4334c8054e2a9cca066715523823ce232846bd65cefe1a",
-  "timestamp": "2026-09-20T11:11:30+0000",
+  "timestamp": "2026-09-24T18:14:49+0000",
   "python": "3.13.15",
   "test_files": [
     "tests/test_rng_persistence.py",

research/generated/verification/phase_b_gate_status.json

@@ -3,23 +3,23 @@
     "artifact": "tests/test_baseline.json",
     "collection_errors": 0,
     "failed": 0,
-    "passed": 1665,
+    "passed": 1666,
     "python": "3.13.15",
     "skipped": 2
   },
   "continuous_integration": {
     "conclusion": "success",
-    "head_sha": "131fccfe92e5a4c4adb1e51119b7ab50d14b255b",
-    "run_id": 35506900245,
-    "workflow": "EMB-002-A proprioception direct V3 #5"
+    "head_sha": "44fc2362f8723dca54cd993a1b80639f611c3486",
+    "run_id": 36039427664,
+    "workflow": "Verification Refresh #4"
   },
   "final_validation": {
     "command": "python scripts/generate_baseline.py",
     "failed": 0,
-    "passed": 1665,
+    "passed": 1666,
     "skipped": 2
   },
-  "generated": "2026-09-20T11:11:52.033103+00:00",
+  "generated": "2026-09-24T18:14:53.160463+00:00",
   "limitations": [
     "Scientific evidence status remains independent from release engineering readiness.",
     "External Hugging Face proxy smoke remains non-blocking operational follow-up."
@@ -42,8 +42,8 @@
     "overall": "passed"
   },
   "source_freeze": {
-    "commit": "131fccfe92e5a4c4adb1e51119b7ab50d14b255b",
-    "tested_tree_digest": "c6e64d9d4043e250071170efc11a3a64086c63d25a94f7e79d38fc913d094cdc"
+    "commit": "44fc2362f8723dca54cd993a1b80639f611c3486",
+    "tested_tree_digest": "f8393956170a5454cac3415751166fd7993c37ac9993ad73d922e8cf80a30ffa"
   },
   "status": "verified",
   "verification_artifacts": [

research/generated/verification/restore_determinism.json

@@ -2,19 +2,19 @@
   "schema_version": 1,
   "suite": "restore_determinism",
   "status": "verified",
-  "test_run_head": "ed290195dc078f68ad252eb2accca1f82aaa1873",
-  "tested_commit": "ed290195dc078f68ad252eb2accca1f82aaa1873",
-  "tested_tree_digest": "c6e64d9d4043e250071170efc11a3a64086c63d25a94f7e79d38fc913d094cdc",
+  "test_run_head": "44fc2362f8723dca54cd993a1b80639f611c3486",
+  "tested_commit": "44fc2362f8723dca54cd993a1b80639f611c3486",
+  "tested_tree_digest": "f8393956170a5454cac3415751166fd7993c37ac9993ad73d922e8cf80a30ffa",
   "scope": "restore_determinism",
   "scope_digest": "62281a2f6208f9eabd4334c8054e2a9cca066715523823ce232846bd65cefe1a",
-  "timestamp": "2026-09-20T11:10:34+0000",
+  "timestamp": "2026-09-24T18:13:54+0000",
   "python": "3.13.15 (main, Aug  6 2026, 02:15:18) [GCC 13.3.0]",
   "K": 500,
   "N": 1000,
   "seed": 42,
   "config_sha256": "b9dbcba2952663b8f75c839bcf935e66539f35c7ddcc1294f4157f869aae42d4",
-  "pid_C1": 12117,
-  "pid_C2": 12121,
+  "pid_C1": 11960,
+  "pid_C2": 11964,
   "digest_A": "eca7a8b2b81bc9bf3045933bd12113a31204d01355636bfd0e4432f11bed77b7",
   "digest_B": "eca7a8b2b81bc9bf3045933bd12113a31204d01355636bfd0e4432f11bed77b7",
   "digest_C": "eca7a8b2b81bc9bf3045933bd12113a31204d01355636bfd0e4432f11bed77b7",

research/generated/verification/single_listener.json

@@ -2,11 +2,11 @@
   "schema_version": 1,
   "suite": "single_listener",
   "status": "verified",
-  "timestamp": "2026-09-20T11:10:57.740711",
+  "timestamp": "2026-09-24T18:14:17.920442",
   "python_version": "3.13.15",
-  "test_run_head": "ed290195dc078f68ad252eb2accca1f82aaa1873",
-  "tested_commit": "ed290195dc078f68ad252eb2accca1f82aaa1873",
-  "tested_tree_digest": "c6e64d9d4043e250071170efc11a3a64086c63d25a94f7e79d38fc913d094cdc",
+  "test_run_head": "44fc2362f8723dca54cd993a1b80639f611c3486",
+  "tested_commit": "44fc2362f8723dca54cd993a1b80639f611c3486",
+  "tested_tree_digest": "f8393956170a5454cac3415751166fd7993c37ac9993ad73d922e8cf80a30ffa",
   "scope": "runtime_integration",
   "scope_digest": "a8aa5e085d359daf039882919f138085c3987fcffb839617335b3332b5fec49f",
   "test_command": "python -m pytest tests/test_single_listener.py -q",

research/generated/verification/structural_e2e.json

@@ -2,11 +2,11 @@
   "schema_version": 1,
   "suite": "structural_e2e",
   "status": "verified",
-  "timestamp": "2026-09-20T11:11:13.938189",
+  "timestamp": "2026-09-24T18:14:32.995477",
   "python_version": "3.13.15",
-  "test_run_head": "ed290195dc078f68ad252eb2accca1f82aaa1873",
-  "tested_commit": "ed290195dc078f68ad252eb2accca1f82aaa1873",
-  "tested_tree_digest": "c6e64d9d4043e250071170efc11a3a64086c63d25a94f7e79d38fc913d094cdc",
+  "test_run_head": "44fc2362f8723dca54cd993a1b80639f611c3486",
+  "tested_commit": "44fc2362f8723dca54cd993a1b80639f611c3486",
+  "tested_tree_digest": "f8393956170a5454cac3415751166fd7993c37ac9993ad73d922e8cf80a30ffa",
   "scope": "structural_e2e",
   "scope_digest": "4036baa871020d36f917b40e4e445209f6ae9f0577e5b082504fb22fe6601a28",
   "test_command": "python -m pytest tests/test_structural_e2e.py -q",

research/generated/verification/structural_live_loop.json

@@ -2,11 +2,11 @@
   "schema_version": 1,
   "suite": "structural_live_loop",
   "status": "verified",
-  "timestamp": "2026-09-20T11:11:15.414988",
+  "timestamp": "2026-09-24T18:14:34.382573",
   "python_version": "3.13.15",
-  "test_run_head": "ed290195dc078f68ad252eb2accca1f82aaa1873",
-  "tested_commit": "ed290195dc078f68ad252eb2accca1f82aaa1873",
-  "tested_tree_digest": "c6e64d9d4043e250071170efc11a3a64086c63d25a94f7e79d38fc913d094cdc",
+  "test_run_head": "44fc2362f8723dca54cd993a1b80639f611c3486",
+  "tested_commit": "44fc2362f8723dca54cd993a1b80639f611c3486",
+  "tested_tree_digest": "f8393956170a5454cac3415751166fd7993c37ac9993ad73d922e8cf80a30ffa",
   "scope": "structural_live_loop",
   "scope_digest": "ed705dc2b187a0a2deb86b1a0c4e13661e0d29f442760990b243675a450fec9a",
   "test_command": "python -m pytest tests/test_structural_live_loop.py -q",

research/preregistrations/PREREG-EMB002B-PROPRIOCEPTION-TRANSITION-V5.json

@@ -0,0 +1,107 @@
+{
+  "schema_version": 1,
+  "preregistration_id": "PREREG-EMB002B-PROPRIOCEPTION-TRANSITION-V5",
+  "research_question": "RQ-EMB-002",
+  "hypothesis": "H-EMB-002-B",
+  "protocol": "embodied_proprioception_transition_v5",
+  "mode": "PROSPECTIVE_TRANSITION_RESOLUTION",
+  "execution_authorized": true,
+  "authorization_scope": "single DATA-only prospective execution; execution authorization is not human scientific review",
+  "human_review_required": true,
+  "scientific_evidence": false,
+  "automatic_evidence_promotion": false,
+  "independent_replication": false,
+  "predecessor_experiment": "EXP-EMB002A-DELAY-SWEEP-V4-20260924",
+  "predecessor_status": "COMPLETED_EXPLORATORY_DATA",
+  "design_rationale": "V4 prospectively mapped a non-monotone delay-response curve and descriptively localized a degradation transition between 50 and 100 ticks. V5 freezes a new hypothesis before fresh data: 50/60 ticks remain within a narrow tolerance band, 90/100 ticks show clear degradation, and 70/80 ticks only localize the transition. V5 does not reinterpret or rescue H-EMB-002-A.",
+  "design": {
+    "conditions": [
+      "delay_0",
+      "delay_50",
+      "delay_60",
+      "delay_70",
+      "delay_80",
+      "delay_90",
+      "delay_100",
+      "feedback_absent"
+    ],
+    "delay_ticks": [
+      0,
+      50,
+      60,
+      70,
+      80,
+      90,
+      100
+    ],
+    "localization_only_delays": [
+      70,
+      80
+    ],
+    "seeds": [
+      925001,
+      925002,
+      925003,
+      925004,
+      925005,
+      925006,
+      925007,
+      925008,
+      925009,
+      925010,
+      925011,
+      925012,
+      925013,
+      925014,
+      925015,
+      925016,
+      925017,
+      925018,
+      925019,
+      925020,
+      925021,
+      925022,
+      925023,
+      925024
+    ],
+    "ticks_per_run": 1000,
+    "inferential_unit": "paired_seed",
+    "primary_outcome": "tracking_rmse_rad",
+    "baseline_condition": "delay_0",
+    "assay_control": "feedback_absent",
+    "external_perturbation": true
+  },
+  "analysis_plan": {
+    "direction_convention": "positive control-minus-delay_0 difference means lower tracking error at delay_0",
+    "tolerance_margin_rad": 0.01,
+    "degradation_margin_rad": 0.03,
+    "degradation_fraction_required": 0.9,
+    "assay_control_margin_rad": 0.2,
+    "primary_rules": [
+      "delay_50 mean difference versus delay_0 <= +0.01 rad",
+      "delay_60 mean difference versus delay_0 <= +0.01 rad",
+      "delay_90 mean difference versus delay_0 >= +0.03 rad and fraction_delay_0_lower >= 0.90",
+      "delay_100 mean difference versus delay_0 >= +0.03 rad and fraction_delay_0_lower >= 0.90"
+    ],
+    "assay_validity_rule": "feedback_absent mean difference versus delay_0 >= +0.20 rad and fraction_delay_0_lower >= 0.95",
+    "localization_rule": "70 and 80 ticks are descriptive only; report the earliest registered nonzero delay meeting the degradation margin and fraction rule",
+    "p_values": false,
+    "confirmatory_thresholds": true,
+    "thresholds_frozen_before_v5_data": true,
+    "outcome_dependent_stopping": false
+  },
+  "integrity_requirements": [
+    "clean source checkout before execution",
+    "all 192 registered condition-by-seed runs present",
+    "1000 executed ticks in every run",
+    "no runtime errors",
+    "same initial neural state within each seed",
+    "same initial body state within each seed",
+    "same graph fingerprint within each seed",
+    "every delay arm records the exact preregistered delay",
+    "every delayed trace observes the same-run sensor tape at exactly t-delay with initial-value clamping",
+    "feedback_absent observations are exactly zero"
+  ],
+  "stopping_rule": "Execute exactly 24 fresh paired seeds across all eight arms. Retain failures; no replacement seeds and no outcome-dependent stopping.",
+  "claim_boundary": "Prospective synthetic DATA for the new H-EMB-002-B timing-tolerance hypothesis derived from the earlier exploratory V4 curve. A supported result is limited to this fixed six-neuron joint fixture and the frozen effect-margin rules. It does not establish biological proprioception, general sensorimotor timing laws, real-device transfer, autonomy, consciousness, 5D superiority, independent replication, or scientific EVID. Human Review remains required."
+}