code/validation/Python/0020360_run.py

#!/usr/bin/env python

import os
import sys

lib_path = os.path.realpath(os.path.join(os.path.abspath(os.path.dirname(__file__)), '..', 'lib'))
if lib_path not in sys.path:
    sys.path[0:0] = [lib_path]

import utils
import clusterers
import processors
import simplejson as json
import os
import argparse
import analyzers
import tokenizers
import numpy as np
from sklearn.feature_extraction import DictVectorizer
from sklearn import svm, preprocessing, cross_validation
from sklearn.metrics import precision_recall_curve, auc, classification_report, precision_recall_fscore_support
import collections
import random
def main(args):

    path = utils.get_data_path(args.site[0])
    urls = utils.load_urls(path)

    # load data
    data = [utils.load_data(path, id) for id, url in enumerate(urls)]
    random.shuffle(data)
    for page in data:
        random.shuffle(page['texts'])

    # process data
    processor = processors.Processor(data, tokenizer=tokenizers.GenericTokenizer, analyzer=analyzers.LongestAnalyzer)
    features = processor.extract()

    # clustering
    clusterer = clusterers.DBSCAN()
    labels = clusterer.cluster(features).labels_

    # prepare features
    continuous_features, discrete_features, labels = processor.prepare(labels)

    vectorizer = DictVectorizer()
    discrete_features = vectorizer.fit_transform(discrete_features).toarray()
    continuous_features = np.array(continuous_features)
    labels = np.array(labels).astype(np.float32)

    features = np.hstack([continuous_features, discrete_features]).astype(np.float32)

    # scale features
    features = preprocessing.scale(features)
    print features.shape

    precisions = []
    recalls = []
    f1scores = []
    supports = []

    rs = cross_validation.KFold(len(labels), n_folds=4, shuffle=False, random_state=0)
    for train_index, test_index in rs:
        print 'training size = %d, testing size = %d' % (len(train_index), len(test_index))

        clf = svm.SVC(verbose=False, kernel='linear', probability=False, random_state=0, cache_size=2000, class_weight='auto')
        clf.fit(features[train_index], labels[train_index])

        print clf.n_support_

        print "training:"
        predicted = clf.predict(features[train_index])
        print classification_report(labels[train_index], predicted)

        print "testing:"
        predicted = clf.predict(features[test_index])
        print classification_report(labels[test_index], predicted)

        precision, recall, f1score, support = precision_recall_fscore_support(labels[test_index], predicted)

        precisions.append(precision)
        recalls.append(recall)
        f1scores.append(f1score)
        supports.append(support)

    precisions = np.mean(np.array(precisions), axis=0)
    recalls = np.mean(np.array(recalls), axis=0)
    f1scores = np.mean(np.array(f1scores), axis=0)
    supports = np.mean(np.array(supports), axis=0)

    for label in range(2):
        print '%f\t%f\t%f\t%f' % (precisions[label], recalls[label], f1scores[label], supports[label])

    return

    negatives = []
    positives = []
    for i in range(len(processor.texts)):
        if labels[i]:
            positives.append(processor.texts[i])
        else:
            negatives.append(processor.texts[i])

    stats(negatives, positives)

    return

    """

    ham = collections.defaultdict(dict)
    spam = collections.defaultdict(dict)

    for id, cluster in clusters.iteritems():
        for page in cluster['pages'].values():
            content = ''
            for text in page['texts']:
                content += ' '.join(text['text'])
            if cluster['label'] is 1:
                ham[url][id] = content
            else:
                spam[url][id] = content


    with open(os.path.join(path, 'svm.json'), 'w') as f:
        f.write(json.dumps({'ham': ham, 'spam': spam}, indent=2, ensure_ascii=False).encode('utf8'))
    """


def stats(negatives, positives):
    negative_features = set()
    positives_features = set()
    negative_counts = collections.defaultdict(lambda: 0)
    positives_counts = collections.defaultdict(lambda: 0)
    negatives_paths = collections.defaultdict(lambda: 0)
    positives_paths = collections.defaultdict(lambda: 0)

    for text in negatives:
        negative_features |= set(text['computed'].items())
        negatives_paths[' > '.join(text['path'])] += 1

    for text in positives:
        positives_features |= set(text['computed'].items())
        positives_paths[' > '.join(text['path'])] += 1

    common = negative_features & positives_features

    for text in negatives:
        for key, value in text['computed'].iteritems():
            if (key, value) not in common:
                negative_counts[(key, value)] += 1

    for text in positives:
        for key, value in text['computed'].iteritems():
            if (key, value) not in common:
                positives_counts[(key, value)] += 1

    print 'negatives: '
    print list(reversed(sorted(filter(lambda x: x[1] > 1, negative_counts.items()), key=lambda pair: pair[1])))[:10]
    print list(reversed(sorted(filter(lambda x: x[1] > 1, negatives_paths.items()), key=lambda pair: pair[1])))[:10]
    print 'positives: '
    print list(reversed(sorted(filter(lambda x: x[1] > 1, positives_counts.items()), key=lambda pair: pair[1])))[:10]
    print list(reversed(sorted(filter(lambda x: x[1] > 1, positives_paths.items()), key=lambda pair: pair[1])))[:10]



def parse_args():
    """
    Parse commandline arguments
    """
    parser = argparse.ArgumentParser(description='Run the whole pipeline on site pages.')
    parser.add_argument('site', metavar='site', type=str, nargs=1, help='site id, for example: theverge, npr, nytimes')
    return parser.parse_args()

if __name__ == '__main__':
    main(parse_args())