Datasets:
Download generator/scripts/run_balanced_visual_screening.py from WayneGuo0011/Knossos: direct link, hf CLI and curl.
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https://huggingface.co/datasets/WayneGuo0011/Knossos/resolve/main/generator/scripts/run_balanced_visual_screening.py
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hf download hf://datasets/WayneGuo0011/Knossos/generator/scripts/run_balanced_visual_screening.py
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curl -L -o run_balanced_visual_screening.py https://huggingface.co/datasets/WayneGuo0011/Knossos/resolve/main/generator/scripts/run_balanced_visual_screening.py
19 kB
| #!/usr/bin/env python3 | |
| from __future__ import annotations | |
| import argparse | |
| import importlib.util | |
| import json | |
| import os | |
| import random | |
| import shutil | |
| import time | |
| import urllib.error | |
| import urllib.request | |
| from collections import Counter, defaultdict | |
| from pathlib import Path | |
| from typing import Any, Dict, Iterable, List, Optional, Tuple | |
| REPO = Path(__file__).resolve().parents[1] | |
| QA_SCRIPT = REPO / "scripts" / "run_gpt4o_visual_qa.py" | |
| DIFFICULTIES = ("simple", "medium", "difficult") | |
| SPLITS = ("train", "test") | |
| def load_qa_module(): | |
| spec = importlib.util.spec_from_file_location("visual_qa", QA_SCRIPT) | |
| if spec is None or spec.loader is None: | |
| raise RuntimeError(f"Could not load {QA_SCRIPT}") | |
| module = importlib.util.module_from_spec(spec) | |
| spec.loader.exec_module(module) | |
| return module | |
| QA = load_qa_module() | |
| DIFFICULT_EXTRA_PROMPT = """ | |
| Additional note for difficult samples: | |
| - This sample is intentionally difficult. Be more tolerant of density, crossings, long routes, small but legible text, and local clutter. | |
| - Still FAIL if the image is genuinely unusable or the graph structure is ambiguous. | |
| - The final selection still requires overall PASS; do not mark a bad image as PASS. | |
| """ | |
| def sample_key(row: Dict[str, Any]) -> str: | |
| value = row.get("unified_sample_id") or row.get("sample_id") | |
| if not value: | |
| raise ValueError(f"Missing sample id in row: {row}") | |
| return str(value) | |
| def read_jsonl(path: Path) -> List[Dict[str, Any]]: | |
| rows: List[Dict[str, Any]] = [] | |
| if not path.exists(): | |
| return rows | |
| with path.open("r", encoding="utf-8") as handle: | |
| for line in handle: | |
| if line.strip(): | |
| rows.append(json.loads(line)) | |
| return rows | |
| def write_jsonl(path: Path, rows: Iterable[Dict[str, Any]]) -> None: | |
| path.parent.mkdir(parents=True, exist_ok=True) | |
| with path.open("w", encoding="utf-8") as handle: | |
| for row in rows: | |
| handle.write(json.dumps(row, ensure_ascii=False) + "\n") | |
| def load_manifest(dataset_root: Path, manifest_path: Optional[Path]) -> List[Dict[str, Any]]: | |
| path = manifest_path or dataset_root / "manifest.jsonl" | |
| rows: List[Dict[str, Any]] = [] | |
| for row in read_jsonl(path): | |
| row = dict(row) | |
| row["unified_sample_id"] = sample_key(row) | |
| row["image_path"] = str(dataset_root / row["image"]) | |
| rows.append(row) | |
| return rows | |
| def allocate_targets(counts: Dict[str, int], total_target: int) -> Dict[str, int]: | |
| total_source = sum(counts.values()) | |
| if total_source <= 0: | |
| return {difficulty: 0 for difficulty in DIFFICULTIES} | |
| raw: Dict[str, float] = { | |
| difficulty: total_target * counts.get(difficulty, 0) / total_source | |
| for difficulty in DIFFICULTIES | |
| } | |
| targets = {difficulty: int(raw[difficulty]) for difficulty in DIFFICULTIES} | |
| remaining = total_target - sum(targets.values()) | |
| order = sorted(DIFFICULTIES, key=lambda difficulty: (raw[difficulty] - targets[difficulty], difficulty), reverse=True) | |
| for difficulty in order[:remaining]: | |
| targets[difficulty] += 1 | |
| return targets | |
| def compute_targets(rows: List[Dict[str, Any]], target_train: int, target_test: int) -> Dict[Tuple[str, str, str], int]: | |
| source = Counter((row["domain"], row["split"], row["difficulty"]) for row in rows) | |
| domains = sorted({str(row["domain"]) for row in rows}) | |
| targets: Dict[Tuple[str, str, str], int] = {} | |
| for domain in domains: | |
| for split, total_target in (("train", target_train), ("test", target_test)): | |
| diff_counts = {difficulty: source[(domain, split, difficulty)] for difficulty in DIFFICULTIES} | |
| for difficulty, count in allocate_targets(diff_counts, total_target).items(): | |
| targets[(domain, split, difficulty)] = count | |
| return targets | |
| def call_visual_qa( | |
| base_url: str, | |
| api_key: str, | |
| model: str, | |
| image_path: Path, | |
| difficulty: str, | |
| max_tokens: int, | |
| timeout: int, | |
| ) -> str: | |
| prompt = QA.VISUAL_QA_PROMPT | |
| if difficulty == "difficult": | |
| prompt += DIFFICULT_EXTRA_PROMPT | |
| payload = { | |
| "model": model, | |
| "messages": [ | |
| {"role": "system", "content": "You are a strict but practical visual QA reviewer."}, | |
| { | |
| "role": "user", | |
| "content": [ | |
| {"type": "text", "text": prompt}, | |
| {"type": "image_url", "image_url": {"url": QA.image_data_url(image_path)}}, | |
| ], | |
| }, | |
| ], | |
| "temperature": 0, | |
| "max_tokens": max_tokens, | |
| } | |
| request = urllib.request.Request( | |
| base_url.rstrip("/") + "/chat/completions", | |
| data=json.dumps(payload).encode("utf-8"), | |
| headers={"Authorization": f"Bearer {api_key}", "Content-Type": "application/json"}, | |
| method="POST", | |
| ) | |
| try: | |
| with urllib.request.urlopen(request, timeout=timeout) as response: | |
| body = json.loads(response.read().decode("utf-8")) | |
| except urllib.error.HTTPError as exc: | |
| detail = exc.read().decode("utf-8", errors="replace") | |
| raise RuntimeError(f"HTTP {exc.code}: {detail[:2000]}") from exc | |
| return body["choices"][0]["message"]["content"] | |
| def result_passed(record: Dict[str, Any]) -> bool: | |
| result = record.get("result") if isinstance(record.get("result"), dict) else {} | |
| return record.get("status") == "OK" and result.get("overall") == "PASS" | |
| def link_or_copy(src: Path, dst: Path) -> None: | |
| dst.parent.mkdir(parents=True, exist_ok=True) | |
| if dst.exists(): | |
| dst.unlink() | |
| try: | |
| os.link(src, dst) | |
| except OSError: | |
| shutil.copy2(src, dst) | |
| def summarize_progress( | |
| targets: Dict[Tuple[str, str, str], int], | |
| selected: Dict[str, Dict[str, Any]], | |
| reviewed: Dict[str, Dict[str, Any]], | |
| ) -> Dict[str, Any]: | |
| selected_counts = Counter() | |
| reviewed_counts = Counter() | |
| failed_counts = Counter() | |
| for row in selected.values(): | |
| selected_counts[(row["domain"], row["split"], row["difficulty"])] += 1 | |
| for row in reviewed.values(): | |
| key = (row.get("domain"), row.get("split"), row.get("difficulty")) | |
| reviewed_counts[key] += 1 | |
| if not result_passed(row): | |
| failed_counts[key] += 1 | |
| groups: Dict[str, Dict[str, int]] = {} | |
| complete = True | |
| for key, target in sorted(targets.items()): | |
| selected_count = selected_counts[key] | |
| reviewed_count = reviewed_counts[key] | |
| if selected_count < target: | |
| complete = False | |
| groups["/".join(key)] = { | |
| "target": target, | |
| "selected": selected_count, | |
| "reviewed": reviewed_count, | |
| "failed_or_error": failed_counts[key], | |
| "remaining": max(0, target - selected_count), | |
| } | |
| return { | |
| "complete": complete, | |
| "selected_total": len(selected), | |
| "reviewed_total": len(reviewed), | |
| "failed_or_error_total": sum(1 for row in reviewed.values() if not result_passed(row)), | |
| "groups": groups, | |
| } | |
| def write_outputs( | |
| dataset_root: Path, | |
| out_dir: Path, | |
| selected: Dict[str, Dict[str, Any]], | |
| reviewed: Dict[str, Dict[str, Any]], | |
| targets: Dict[Tuple[str, str, str], int], | |
| ) -> None: | |
| selected_rows = [row["manifest_row"] for row in sorted(selected.values(), key=lambda item: sample_key(item["manifest_row"]))] | |
| rejected_rows = [row for row in sorted(reviewed.values(), key=sample_key) if not result_passed(row)] | |
| write_jsonl(out_dir / "selected_manifest.jsonl", selected_rows) | |
| write_jsonl(out_dir / "rejected.jsonl", rejected_rows) | |
| (out_dir / "screening_state.json").write_text( | |
| json.dumps(summarize_progress(targets, selected, reviewed), ensure_ascii=False, indent=2), | |
| encoding="utf-8", | |
| ) | |
| selected_root = out_dir / "selected_dataset" | |
| for row in selected_rows: | |
| image_rel = Path(row["image"]) | |
| ann_rel = Path(row["annotation"]) | |
| link_or_copy(dataset_root / image_rel, selected_root / image_rel) | |
| link_or_copy(dataset_root / ann_rel, selected_root / ann_rel) | |
| write_jsonl(selected_root / "manifest.jsonl", selected_rows) | |
| def choose_next_group( | |
| targets: Dict[Tuple[str, str, str], int], | |
| selected_counts: Counter, | |
| available: Dict[Tuple[str, str, str], List[Dict[str, Any]]], | |
| rng: random.Random, | |
| ) -> Optional[Tuple[str, str, str]]: | |
| pending = [ | |
| key | |
| for key, target in targets.items() | |
| if selected_counts[key] < target and available.get(key) | |
| ] | |
| if not pending: | |
| return None | |
| weights = [max(1, targets[key] - selected_counts[key]) for key in pending] | |
| return rng.choices(pending, weights=weights, k=1)[0] | |
| def main() -> int: | |
| parser = argparse.ArgumentParser() | |
| parser.add_argument("--config", type=Path, default=Path("api_config.yaml")) | |
| parser.add_argument("--dataset-root", type=Path, default=Path("outputs/final-before-screen-data")) | |
| parser.add_argument("--manifest", type=Path, default=None) | |
| parser.add_argument("--output-dir", type=Path, default=Path("outputs/final-before-screen-balanced-screening")) | |
| parser.add_argument("--cache-dir", type=Path, default=Path("outputs/gpt4o_visual_qa/final_before_screen_balanced_cache")) | |
| parser.add_argument("--model", default="gpt-4o") | |
| parser.add_argument("--target-train", type=int, default=3000) | |
| parser.add_argument("--target-test", type=int, default=200) | |
| parser.add_argument("--seed", type=int, default=20260610) | |
| parser.add_argument("--max-tokens", type=int, default=700) | |
| parser.add_argument("--timeout", type=int, default=120) | |
| parser.add_argument("--sleep", type=float, default=0.1) | |
| parser.add_argument("--report-every", type=int, default=100) | |
| parser.add_argument("--max-reviews", type=int, default=0, help="Stop after this many new reviews. Use 0 for unlimited.") | |
| parser.add_argument("--max-api-errors", type=int, default=5) | |
| parser.add_argument("--dry-run", action="store_true") | |
| args = parser.parse_args() | |
| rows = load_manifest(args.dataset_root, args.manifest) | |
| targets = compute_targets(rows, args.target_train, args.target_test) | |
| groups: Dict[Tuple[str, str, str], List[Dict[str, Any]]] = defaultdict(list) | |
| for row in rows: | |
| groups[(row["domain"], row["split"], row["difficulty"])].append(row) | |
| rng = random.Random(args.seed) | |
| for key, group_rows in groups.items(): | |
| rng.shuffle(group_rows) | |
| args.output_dir.mkdir(parents=True, exist_ok=True) | |
| results_path = args.output_dir / "screening_results.jsonl" | |
| raw_dir = args.output_dir / "raw" | |
| raw_dir.mkdir(parents=True, exist_ok=True) | |
| args.cache_dir.mkdir(parents=True, exist_ok=True) | |
| reviewed: Dict[str, Dict[str, Any]] = {sample_key(row): row for row in read_jsonl(results_path)} | |
| selected: Dict[str, Dict[str, Any]] = {} | |
| for record in reviewed.values(): | |
| if result_passed(record): | |
| manifest_row = record.get("manifest_row") | |
| if isinstance(manifest_row, dict): | |
| selected[sample_key(manifest_row)] = record | |
| selected_counts = Counter() | |
| for record in selected.values(): | |
| row = record["manifest_row"] | |
| selected_counts[(row["domain"], row["split"], row["difficulty"])] += 1 | |
| available: Dict[Tuple[str, str, str], List[Dict[str, Any]]] = {} | |
| for key, group_rows in groups.items(): | |
| available[key] = [row for row in group_rows if sample_key(row) not in reviewed] | |
| target_report = { | |
| "/".join(key): { | |
| "target": target, | |
| "source_candidates": len(groups.get(key, [])), | |
| } | |
| for key, target in sorted(targets.items()) | |
| } | |
| print(json.dumps({"targets": target_report}, ensure_ascii=False, indent=2), flush=True) | |
| if args.dry_run: | |
| return 0 | |
| cfg = QA.parse_simple_yaml(args.config) | |
| api_cfg = cfg.get("api") or cfg | |
| api_key = api_cfg.get("key") or cfg.get("key") | |
| base_url = api_cfg.get("base") or cfg.get("base") | |
| if not api_key or not base_url: | |
| raise ValueError("Could not find api.key and api.base in config") | |
| new_reviews = 0 | |
| transient_error_samples: set[str] = set() | |
| consecutive_api_errors = 0 | |
| api_error_path = args.output_dir / "api_errors.jsonl" | |
| with results_path.open("a", encoding="utf-8") as out, api_error_path.open("a", encoding="utf-8") as api_error_out: | |
| while True: | |
| filtered_available = { | |
| group_key: [row for row in group_rows if sample_key(row) not in transient_error_samples] | |
| for group_key, group_rows in available.items() | |
| } | |
| key = choose_next_group(targets, selected_counts, filtered_available, rng) | |
| if key is None: | |
| break | |
| domain, split, difficulty = key | |
| while available[key]: | |
| sample = available[key].pop() | |
| if sample_key(sample) not in transient_error_samples: | |
| break | |
| else: | |
| continue | |
| sample_id = sample_key(sample) | |
| image_path = Path(sample["image_path"]) | |
| image_hash = QA.image_sha256(image_path) | |
| cache_path = args.cache_dir / f"{sample_id}.json" | |
| record: Dict[str, Any] | |
| used_cache = False | |
| if cache_path.exists(): | |
| cached = json.loads(cache_path.read_text(encoding="utf-8")) | |
| if cached.get("image_sha256") == image_hash: | |
| record = cached | |
| used_cache = True | |
| print(f"[cache] {sample_id} {domain}/{split}/{difficulty}", flush=True) | |
| else: | |
| cache_path.unlink() | |
| record = {} | |
| else: | |
| record = {} | |
| if not record: | |
| print( | |
| f"[review] {sample_id} {domain}/{split}/{difficulty} " | |
| f"need={targets[key] - selected_counts[key]}", | |
| flush=True, | |
| ) | |
| raw_text = "" | |
| parse_error = None | |
| warnings: List[str] = [] | |
| try: | |
| raw_text = call_visual_qa( | |
| str(base_url), | |
| str(api_key), | |
| args.model, | |
| image_path, | |
| difficulty, | |
| args.max_tokens, | |
| args.timeout, | |
| ) | |
| (raw_dir / f"{sample_id}.raw.txt").write_text(raw_text, encoding="utf-8") | |
| obj, parse_error = QA.extract_json_object(raw_text) | |
| if obj is None: | |
| status = "PARSE_ERROR" | |
| result = { | |
| "overall": "FAIL", | |
| "checks": {name: "FAIL" for name in QA.CHECK_NAMES}, | |
| "failure_reasons": [str(parse_error)], | |
| "quality_score": 1, | |
| } | |
| else: | |
| status = "OK" | |
| result, warnings = QA.normalize_result(obj) | |
| except Exception as exc: | |
| parse_error = f"api_error:{exc}" | |
| error_record = { | |
| "unified_sample_id": sample_id, | |
| "sample_id": sample.get("sample_id", sample_id), | |
| "source_sample_id": sample.get("source_sample_id"), | |
| "domain": domain, | |
| "difficulty": difficulty, | |
| "split": split, | |
| "image": sample.get("image"), | |
| "annotation": sample.get("annotation"), | |
| "image_sha256": image_hash, | |
| "manifest_row": {k: v for k, v in sample.items() if k != "image_path"}, | |
| "status": "API_ERROR", | |
| "parse_error": parse_error, | |
| } | |
| api_error_out.write(json.dumps(error_record, ensure_ascii=False) + "\n") | |
| api_error_out.flush() | |
| transient_error_samples.add(sample_id) | |
| consecutive_api_errors += 1 | |
| print(f" API_ERROR {parse_error}", flush=True) | |
| if consecutive_api_errors >= args.max_api_errors: | |
| raise RuntimeError(f"Stopped after {consecutive_api_errors} consecutive API errors") | |
| continue | |
| record = { | |
| "unified_sample_id": sample_id, | |
| "sample_id": sample.get("sample_id", sample_id), | |
| "source_sample_id": sample.get("source_sample_id"), | |
| "domain": domain, | |
| "difficulty": difficulty, | |
| "split": split, | |
| "image": sample.get("image"), | |
| "annotation": sample.get("annotation"), | |
| "image_sha256": image_hash, | |
| "manifest_row": {k: v for k, v in sample.items() if k != "image_path"}, | |
| "result": result, | |
| "status": status, | |
| "parse_error": parse_error, | |
| "normalization_warnings": warnings, | |
| } | |
| cache_path.write_text(json.dumps(record, ensure_ascii=False, indent=2), encoding="utf-8") | |
| new_reviews += 1 | |
| consecutive_api_errors = 0 | |
| reviewed[sample_id] = record | |
| out.write(json.dumps(record, ensure_ascii=False) + "\n") | |
| out.flush() | |
| if result_passed(record): | |
| selected[sample_id] = record | |
| selected_counts[key] += 1 | |
| print(f" PASS selected={selected_counts[key]}/{targets[key]}", flush=True) | |
| else: | |
| result = record.get("result") or {} | |
| reasons = "; ".join(result.get("failure_reasons") or []) or record.get("parse_error") or "-" | |
| print(f" FAIL/ERROR reasons={reasons}", flush=True) | |
| if args.report_every and len(reviewed) % args.report_every == 0: | |
| summary = summarize_progress(targets, selected, reviewed) | |
| print(json.dumps({k: summary[k] for k in ("selected_total", "reviewed_total", "failed_or_error_total", "complete")}, ensure_ascii=False), flush=True) | |
| write_outputs(args.dataset_root, args.output_dir, selected, reviewed, targets) | |
| if args.max_reviews and new_reviews >= args.max_reviews: | |
| break | |
| if args.sleep and not used_cache: | |
| time.sleep(args.sleep) | |
| write_outputs(args.dataset_root, args.output_dir, selected, reviewed, targets) | |
| summary = summarize_progress(targets, selected, reviewed) | |
| print(json.dumps(summary, ensure_ascii=False, indent=2), flush=True) | |
| return 0 if summary["complete"] else 2 | |
| if __name__ == "__main__": | |
| raise SystemExit(main()) | |