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RESTORE.md

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+# HiReT / Clinical-Reasoning backup — restore instructions
+
+## What this is
+One AES-256 encrypted 7z archive, split into 8 volumes (40 GB each):
+
+    hitraj_backup_20260929.7z.001 ... .008
+
+Archive totals: 444,062 files, 7,249 folders, 325.6 GB uncompressed.
+Everything was packed relative to `/root`, so extracting inside `/root`
+restores the original absolute paths:
+
+    /root/autodl-tmp/Clinical_Reasoning/...        (code, experiments, caches, Datasets, HF_Data)
+    /root/autodl-tmp/ClinicalReasoning-ICLR/...    (ICLR paper source and figures)
+    /root/autodl-tmp/backup_meta/...               (env exports, system info)
+
+## Restore
+1. Download ALL eight volumes plus this file and the checksum file into one folder.
+2. Verify volume integrity:
+
+       sha256sum -c hitraj_backup_20260929.7z.volumes.sha256
+
+3. Extract (one command, all volumes are read automatically):
+
+       cd /root && 7z x /path/to/hitraj_backup_20260929.7z.001
+
+   The passphrase is required. It is kept offline; it is NOT in this archive.
+
+4. Rebuild the Python environment (do not copy the old conda dir):
+
+       /root/miniconda3/bin/conda env create -f /root/autodl-tmp/backup_meta/env_llama-fac-wxr.yml
+       # or: pip install -r /root/autodl-tmp/backup_meta/pip_freeze.txt
+
+## Things that were NOT included (rebuildable or junk)
+- install_tmp/ and pip_cache/ (figure tooling and pip cache, 7.6 GB)
+- __pycache__, *.lock, vscode-*.sock, torchinductor_root, .ipynb_checkpoints
+- /root/miniconda3 itself (rebuild from env_llama-fac-wxr.yml)
+
+## Notes
+- The 6-class and LOS embedding caches ARE included (they take roughly 12-20 h of GPU
+  time to rebuild). Cache fingerprints live under each cache directory manifest.json.
+- Patient-level data (Datasets, per-sample predictions, caches) is MIMIC-IV derived:
+  keep the repository access restricted even though the archive is encrypted.
+- Historical configs use absolute paths; keep the /root/autodl-tmp layout.