add modules/manifest.json

modules/manifest.json

@@ -0,0 +1,46 @@
+{
+  "source": "dense <Module>_largest_matrix.csv as received from the corresponding author",
+  "dense_shape": [
+    17350,
+    17350
+  ],
+  "dense_values": [
+    "0.0",
+    "1.0"
+  ],
+  "dense_line_ending": "CRLF",
+  "rebuild": "python disease_modelling/module_matrix_sparse.py to-matrix <M>_edges.csv out.csv <ref dense or gene_order.txt>",
+  "modules": {
+    "Asthma": {
+      "n_edges": 2366,
+      "n_nodes": 785,
+      "dense_md5": "b78d7fe5723d7d0baf02c71115e88190",
+      "dense_bytes": 1204328966,
+      "matches_gene_lists_txt": true
+    },
+    "PAH": {
+      "n_edges": 741,
+      "n_nodes": 287,
+      "dense_md5": "cf0399f4331452865bd414ca3d3c0728",
+      "dense_bytes": 1204328966,
+      "matches_gene_lists_txt": true
+    },
+    "CAD": {
+      "n_edges": 1949,
+      "n_nodes": 751,
+      "dense_md5": "11704578713f3817b037bf504b28960b",
+      "dense_bytes": 1204328966,
+      "matches_gene_lists_txt": true
+    },
+    "COPD": {
+      "n_edges": 806,
+      "n_nodes": 352,
+      "dense_md5": "f1ca0abf4fc8dc5ae43b0a3e1ef99aa3",
+      "dense_bytes": 1204328966,
+      "matches_gene_lists_txt": true
+    }
+  },
+  "gene_order_file": "modules/gene_order.txt",
+  "gene_order_md5": "53580290d9f126208b043da1bdb11a3e",
+  "note": "Same content as disease_modelling/submission/data/modules/gene_lists/<M>.txt in the GitHub repo, which stores the pairs space-separated; COPD.txt carries a trailing '{}' edge-attribute column from nx.write_edgelist."
+}