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#!/usr/bin/env python3
"""Fail-closed cross-task validator for the matched ImageNet spectral audit.
The eight GPU tasks are intentionally not trusted to validate one another. This
program consumes their row-level artifacts, checks the frozen protocol across
tasks, and deterministically rebuilds the root tables. It never writes the
root ``COMPLETE`` marker; the launch wrapper may do that only after this command
returns zero and verifies the emitted artifact hashes.
"""
from __future__ import annotations
import argparse
import csv
import hashlib
import html
import importlib.metadata
import io
import json
import math
import os
import re
import shutil
import sys
import tempfile
import warnings
import zipfile
from collections import Counter
from dataclasses import dataclass
from datetime import UTC, datetime
from pathlib import Path
from typing import Any, Iterable, Mapping, Sequence
import numpy as np
AUDIT_ROOT = Path("/nfs/ywang29/GmNet/e4_spectral_audit")
DEFAULT_INPUT_MANIFEST = AUDIT_ROOT / "input_manifest.json"
DEFAULT_RUNNER = AUDIT_ROOT / "code" / "run_e4_imagenet_spectral_audit.py"
PROTOCOL_ID = "gmnet-e4-imagenet-matched-spectral-v1"
TASK_ORDER = ("B", "D", "S", "C", "SC", "D_order1", "D_order2", "B_order1")
CANONICAL_ARMS = ("B", "D", "S", "C", "SC")
EXPECTED_TASK = {
"B": ("B", "canonical"),
"D": ("D", "canonical"),
"S": ("S", "canonical"),
"C": ("C", "canonical"),
"SC": ("SC", "canonical"),
"D_order1": ("D", "salt1"),
"D_order2": ("D", "salt2"),
"B_order1": ("B", "salt1"),
}
ORDER_SALTS = {
"canonical": None,
"salt1": "gmnet-e4-order-sensitivity-1",
"salt2": "gmnet-e4-order-sensitivity-2",
}
EXPECTED_CONDITIONS = (
"unfiltered",
"lowpass_0.125",
"lowpass_0.25",
"lowpass_0.5",
"lowpass_0.75",
)
SIGNAL_NAMES = (
"carrier",
"gate_input",
"gate_value",
"gated_product",
"residual_delta",
)
COHERENCE_NAMES = ("rho_used", "rho_response")
BASES = ("fft", "dct")
STAGE_DEPTHS = (3, 3, 8, 3)
EXPECTED_STAGES = tuple(
stage for stage, depth in enumerate(STAGE_DEPTHS, start=1) for _ in range(depth)
)
EXPECTED_STAGE_BLOCKS = tuple(
local for depth in STAGE_DEPTHS for local in range(1, depth + 1)
)
EXPANDED_CHANNELS_BY_STAGE = (192, 384, 768, 1536)
RESIDUAL_CHANNELS_BY_STAGE = (48, 96, 192, 384)
FROZEN_CHANNEL_PERMUTATION_SHA256 = (
"0219d0a289ae2e3c2bde90568af4b05d23ca629522f1b19b6a1d09473d87fb8b"
)
FORMAL_TORCH = "2.9.0+cu130"
FORMAL_TORCHVISION = "0.24.0+cu130"
FORMAL_CUDA = "13.0"
EXPECTED_INPUT_MANIFEST_SHA256 = (
"8b32da7c33f6b578dd2b5359d727afe313462be0c0040212a2640755ad2fadf7"
)
EXPECTED_AUDIT_TRAINING_CODE_SHA256 = (
"f6bd434a2ac86c772f2e23683431f3bb7ccb06f539558682a3bea6464bacebf9"
)
EXPECTED_ALIGNMENT_TRAINING_CODE_SHA256 = (
"4a62bc48370247d882196cd9afc1a0f1629a5bbfd522c3f599ffaf0c1187641f"
)
NUM_IMAGES = 50_000
NUM_SPECTRAL_IMAGES = 4_096
NUM_BLOCKS = 17
NUM_CLASSES = 1_000
NUM_BANDS = 4
BOOTSTRAP_REPLICATES = 10_000
BOOTSTRAP_SEED = 20_260_718
ARBITRARY_INDEPENDENT_GATE_GENERALIZATION_PERMITTED = False
LOWPASS_CAUSAL_CAVEAT = (
"Low-pass curves can show task-frequency sensitivity, but they cannot prove "
"that a specific internal gate produced that dependence."
)
HASH_RE = frozenset("0123456789abcdef")
REQUIRED_TASK_FILES = (
"results.json",
"protocol.json",
"environment.json",
"checkpoint_manifest.json",
"subset_manifest.jsonl",
"accuracy_by_condition.csv",
"per_image_accuracy.npz",
"per_image_spectral.npz",
"spectral_by_block.csv",
"spectral_by_stage.csv",
"transfer_matrices.npz",
"batch_pairing_manifest.json",
"data_manifest.json",
"source_provenance.json",
"source_artifacts.sha256",
"artifacts.json",
"COMPLETE",
)
ACCURACY_COLUMNS = (
"task_id",
"arm",
"order",
"condition",
"cutoff",
"samples",
"top1_correct",
"top5_correct",
"top1",
"top5",
"nll",
"ece",
"top1_drop",
"top5_drop",
)
ACCURACY_BOOTSTRAP_COLUMNS = (
"contrast_id",
"left_task_id",
"left_condition",
"right_task_id",
"right_condition",
"metric",
"unit",
"samples",
"point_difference",
"bootstrap_ci95_low",
"bootstrap_ci95_high",
"bootstrap_replicates",
"bootstrap_seed",
)
SPECTRAL_COLUMNS = (
"task_id",
"arm",
"order",
"basis",
"global_block_index",
"stage",
"block",
"signal",
"psd_high_fraction",
"psd_centroid",
"psd_entropy",
"valid",
"invalid",
"centered_rms",
"log10_centered_energy",
"log10_centered_energy_valid",
"log10_centered_energy_invalid",
"noncentered_rms",
"gate_mean",
"gate_cv",
"gate_zero_fraction",
"gate_active_fraction",
"gate_clip_crossing_fraction",
"rho_used",
"rho_response",
"jsd",
"jsd_valid_channels",
"m_res",
"m_res_conditional",
"m_res_conditional_valid_channels",
"suppressed_fraction",
"constant_gate_fraction",
"constant_gate_count",
"output_minus_carrier_high_fraction",
"output_minus_carrier_centroid",
"output_minus_carrier_valid_channels",
"m_off",
"m_disp",
"source_valid",
"source_suppressed",
"source_valid_fraction",
"source_suppressed_fraction",
)
BLOCK_SUMMARY_GATED_EXTRA_FIELDS = {
"transfer_primary",
"transfer_conditional",
"transfer_source_valid",
"transfer_source_suppressed",
}
STAGE_COLUMNS = (
"task_id",
"arm",
"order",
"basis",
"stage",
"signal",
"aggregation",
"block_count",
"psd_high_fraction",
"psd_centroid",
"psd_entropy",
"centered_rms",
"noncentered_rms",
"rho_used",
"rho_response",
"jsd",
"m_res",
"suppressed_fraction",
"m_off",
"m_disp",
)
RAW_AMPLITUDE_COLUMNS = (
"task_id",
"arm",
"order",
"global_block_index",
"stage",
"block",
"signal",
"metric",
"dataset_median",
"q25",
"q75",
"bootstrap_ci95_low",
"bootstrap_ci95_high",
"bootstrap_replicates",
"valid_receivers",
"invalid_receivers",
)
GATE_OPERATING_COLUMNS = (
"task_id",
"arm",
"order",
"basis",
"global_block_index",
"stage",
"block",
"metric",
"aggregation",
"point",
"dataset_median",
"q25",
"q75",
"median_bootstrap_ci95_low",
"median_bootstrap_ci95_high",
"block_stage_min",
"block_stage_max",
"bootstrap_ci95_low",
"bootstrap_ci95_high",
"bootstrap_replicates",
"valid_receivers",
"invalid_receivers",
)
TRANSFER_BOOTSTRAP_COLUMNS = (
"task_id",
"arm",
"basis",
"global_block_index",
"stage",
"block",
"summary",
"source_band",
"target_band",
"point",
"bootstrap_q025",
"bootstrap_q50",
"bootstrap_q975",
"defined",
"bootstrap_defined_replicates",
"bootstrap_replicates",
"bootstrap_seed",
)
ROOT_SIGNAL_PREFIXES = {
"carrier": "x",
"gate_value": "q",
"gated_product": "y",
}
ROOT_SIGNAL_POINT_METRICS = (
"psd_high_fraction",
"psd_centroid",
"psd_entropy",
"centered_rms",
"log10_centered_energy",
"noncentered_rms",
)
ROOT_SIGNAL_BOOTSTRAP_METRICS = (
"psd_high_fraction",
"psd_centroid",
"psd_entropy",
)
ROOT_OPERATOR_METRICS = (
"rho_used",
"rho_response",
"jsd",
"m_res",
"m_res_conditional",
"suppressed_fraction",
"constant_gate_fraction",
"m_off",
"m_disp",
"source_valid_fraction",
"source_suppressed_fraction",
"output_minus_carrier_high_fraction",
"output_minus_carrier_centroid",
)
ROOT_SPECTRAL_COLUMNS = (
"task_id",
"arm",
"basis",
"global_block_index",
"stage",
"block",
*tuple(
field
for prefix in ROOT_SIGNAL_PREFIXES.values()
for metric in ROOT_SIGNAL_POINT_METRICS
for field in (
(
f"{prefix}_{metric}",
f"{prefix}_{metric}_ci95_low",
f"{prefix}_{metric}_ci95_high",
f"{prefix}_{metric}_defined",
f"{prefix}_{metric}_valid_receivers",
)
if metric in ROOT_SIGNAL_BOOTSTRAP_METRICS
else (f"{prefix}_{metric}",)
)
),
*tuple(
field
for prefix in ROOT_SIGNAL_PREFIXES.values()
for field in (
f"{prefix}_valid",
f"{prefix}_invalid",
f"{prefix}_log10_centered_energy_valid",
f"{prefix}_log10_centered_energy_invalid",
)
),
"q_gate_mean",
"q_gate_cv",
"q_gate_zero_fraction",
"q_gate_active_fraction",
"q_gate_clip_crossing_fraction",
*tuple(
field
for metric in ROOT_OPERATOR_METRICS
for field in (
metric,
f"{metric}_ci95_low",
f"{metric}_ci95_high",
f"{metric}_defined",
f"{metric}_valid_receivers",
)
),
"m_res_conditional_valid_channels",
"constant_gate_count",
"source_valid",
"source_suppressed",
"jsd_valid_channels",
"jsd_invalid_channels",
"output_minus_carrier_valid_channels",
"output_minus_carrier_invalid_channels",
)
ROOT_STAGE_METRICS = (
*ROOT_SIGNAL_BOOTSTRAP_METRICS,
*ROOT_OPERATOR_METRICS,
)
ROOT_STAGE_COLUMNS = (
"task_id",
"arm",
"basis",
"stage",
"signal",
"aggregation",
"block_count",
*tuple(
field
for metric in ROOT_STAGE_METRICS
for field in (
f"{metric}_mean",
f"{metric}_block_min",
f"{metric}_block_max",
f"{metric}_ci95_low",
f"{metric}_ci95_high",
f"{metric}_defined",
f"{metric}_valid_block_count",
)
),
)
ORDER_PROBE_SPECTRAL_COLUMNS = (
"task_id",
"arm",
"order",
*tuple(
field
for field in ROOT_SPECTRAL_COLUMNS[2:]
if not field.endswith(("_ci95_low", "_ci95_high"))
),
)
D_ORDER_TASKS = ("D", "D_order1", "D_order2")
D_ORDER_RANGE_POINT_METRICS = tuple(
field
for field in ROOT_SPECTRAL_COLUMNS
if field
not in {"task_id", "arm", "basis", "global_block_index", "stage", "block"}
and not field.endswith(("_ci95_low", "_ci95_high"))
)
D_ORDER_TRANSFER_METRICS = tuple(
f"transfer_{kind}_s{source}_t{target}"
for kind in ("primary", "conditional")
for source in range(NUM_BANDS)
for target in range(NUM_BANDS)
)
D_ORDER_RAW_DIAGNOSTIC_METRICS = tuple(
f"raw_{prefix}_{metric}_{statistic}"
for prefix in ROOT_SIGNAL_PREFIXES.values()
for metric in ("centered_rms", "log10_centered_energy", "noncentered_rms")
for statistic in ("dataset_median", "q25", "q75")
) + tuple(
f"raw_q_{metric}_{statistic}"
for metric in (
"gate_mean",
"gate_cv",
"gate_zero_fraction",
"gate_active_fraction",
"gate_clip_crossing_fraction",
)
for statistic in ("dataset_median", "q25", "q75")
)
D_ORDER_RANGE_METRICS = (
D_ORDER_RANGE_POINT_METRICS
+ D_ORDER_RAW_DIAGNOSTIC_METRICS
+ D_ORDER_TRANSFER_METRICS
)
D_ORDER_SENSITIVITY_COLUMNS = (
"basis",
"global_block_index",
"stage",
"block",
"registered_task_count",
*tuple(
field
for metric in D_ORDER_RANGE_METRICS
for field in (
*(
field
for task_id in D_ORDER_TASKS
for field in (
f"{metric}_{task_id}",
f"{metric}_{task_id}_defined",
)
),
f"{metric}_min",
f"{metric}_max",
f"{metric}_alternate_min",
f"{metric}_alternate_max",
f"{metric}_alternate_range_defined",
f"{metric}_defined_count",
)
),
)
COHERENCE_COLUMNS = (
"task_id",
"arm",
"order",
"global_block_index",
"stage",
"block",
"coherence",
"class_equal_mean",
"receiver_mean_sd",
"receiver_mean_q05",
"receiver_mean_q50",
"receiver_mean_q95",
"valid_channels",
"invalid_channels",
"valid_receivers",
"invalid_receivers",
)
class ValidationFailure(RuntimeError):
"""Raised after all available fail-closed checks have been recorded."""
class DuplicateKeyError(ValueError):
pass
def _reject_constant(value: str) -> None:
raise ValueError(f"non-finite JSON number is forbidden: {value}")
def _object_no_duplicates(pairs: list[tuple[str, Any]]) -> dict[str, Any]:
result: dict[str, Any] = {}
for key, value in pairs:
if key in result:
raise DuplicateKeyError(f"duplicate JSON key: {key}")
result[key] = value
return result
def load_json(path: Path) -> dict[str, Any]:
with path.open("r", encoding="utf-8") as handle:
value = json.load(
handle,
parse_constant=_reject_constant,
object_pairs_hook=_object_no_duplicates,
)
if not isinstance(value, dict):
raise ValueError(f"JSON root must be an object: {path}")
return value
def stable_json(value: Any) -> bytes:
return (
json.dumps(
value,
indent=2,
sort_keys=True,
ensure_ascii=True,
allow_nan=False,
)
+ "\n"
).encode("utf-8")
def file_sha256(path: Path) -> str:
digest = hashlib.sha256()
with path.open("rb") as handle:
for chunk in iter(lambda: handle.read(8 * 1024 * 1024), b""):
digest.update(chunk)
return digest.hexdigest()
def bytes_sha256(value: bytes) -> str:
return hashlib.sha256(value).hexdigest()
def int64_sha256(values: np.ndarray) -> str:
return bytes_sha256(np.asarray(values, dtype="<i8").tobytes(order="C"))
def valid_sha256(value: Any) -> bool:
return (
isinstance(value, str)
and len(value) == 64
and set(value).issubset(HASH_RE)
)
def deterministic_npz_bytes(arrays: Mapping[str, np.ndarray]) -> bytes:
"""Return an NPZ whose member order, timestamps, and permissions are fixed."""
output = io.BytesIO()
with zipfile.ZipFile(output, "w", compression=zipfile.ZIP_STORED) as archive:
for name in sorted(arrays):
if not name or "/" in name or "\\" in name:
raise ValueError(f"invalid NPZ member name: {name!r}")
array = np.asarray(arrays[name])
if array.dtype.hasobject:
raise ValueError(f"object dtype is forbidden in NPZ member {name}")
member = io.BytesIO()
np.lib.format.write_array(member, array, allow_pickle=False)
info = zipfile.ZipInfo(f"{name}.npy", date_time=(1980, 1, 1, 0, 0, 0))
info.compress_type = zipfile.ZIP_STORED
info.external_attr = 0o100644 << 16
info.create_system = 3
archive.writestr(info, member.getvalue())
return output.getvalue()
def csv_bytes(fieldnames: Sequence[str], rows: Iterable[Mapping[str, Any]]) -> bytes:
stream = io.StringIO(newline="")
writer = csv.DictWriter(stream, fieldnames=list(fieldnames), lineterminator="\n")
writer.writeheader()
for row in rows:
writer.writerow({name: format_cell(row.get(name, "")) for name in fieldnames})
return stream.getvalue().encode("utf-8")
def format_cell(value: Any) -> str:
if value is None:
return ""
if isinstance(value, (float, np.floating)):
number = float(value)
if not math.isfinite(number):
return ""
return format(number, ".17g")
if isinstance(value, (bool, np.bool_)):
return "true" if bool(value) else "false"
if isinstance(value, np.integer):
return str(int(value))
return str(value)
def read_csv(path: Path, required_columns: Sequence[str]) -> list[dict[str, str]]:
with path.open("r", encoding="utf-8", newline="") as handle:
reader = csv.DictReader(handle)
if reader.fieldnames is None:
raise ValueError(f"CSV has no header: {path}")
if tuple(reader.fieldnames) != tuple(required_columns):
raise ValueError(
f"CSV {path} header {tuple(reader.fieldnames)} != {tuple(required_columns)}"
)
return list(reader)
def load_npz(path: Path, required: Sequence[str]) -> dict[str, np.ndarray]:
with np.load(path, allow_pickle=False) as archive:
missing = sorted(set(required) - set(archive.files))
if missing:
raise ValueError(f"NPZ {path} is missing fields: {missing}")
result = {name: np.array(archive[name], copy=True) for name in archive.files}
for name, array in result.items():
if array.dtype.hasobject:
raise ValueError(f"object dtype is forbidden: {path}:{name}")
return result
def require_dtype(array: np.ndarray, dtype: str, name: str) -> None:
if array.dtype != np.dtype(dtype):
raise ValueError(f"{name} dtype {array.dtype} != {np.dtype(dtype)}")
def require_shape(array: np.ndarray, shape: tuple[int, ...], name: str) -> None:
if array.shape != shape:
raise ValueError(f"{name} shape {array.shape} != {shape}")
def unicode_tuple(array: np.ndarray, name: str) -> tuple[str, ...]:
if array.ndim != 1 or array.dtype.kind != "U":
raise ValueError(f"{name} must be a one-dimensional Unicode array")
return tuple(str(item) for item in array.tolist())
def canonical_order(order: str) -> np.ndarray:
if order == "canonical":
return np.arange(NUM_IMAGES, dtype=np.int64)
salt = ORDER_SALTS[order]
assert salt is not None
prefix = salt.encode("utf-8") + b"\0"
keyed = [
(hashlib.sha256(prefix + int(index).to_bytes(8, "little", signed=False)).digest(), index)
for index in range(NUM_IMAGES)
]
keyed.sort(key=lambda row: (row[0], row[1]))
return np.asarray([index for _, index in keyed], dtype=np.int64)
def class_equal_mean(values: np.ndarray, class_ids: np.ndarray) -> float:
values = np.asarray(values, dtype=np.float64)
class_ids = np.asarray(class_ids)
means: list[float] = []
for class_id in range(NUM_CLASSES):
selected = values[class_ids == class_id]
finite = selected[np.isfinite(selected)]
means.append(
float(finite.mean(dtype=np.float64)) if finite.size else float("nan")
)
result = float(np.nanmean(np.asarray(means, dtype=np.float64)))
if not math.isfinite(result):
raise ValueError("class-equal statistic has no valid class observations")
return result
def optional_class_equal_mean(
values: np.ndarray, class_ids: np.ndarray
) -> float | None:
values = np.asarray(values, dtype=np.float64)
if not np.isfinite(values).any():
return None
return class_equal_mean(values, class_ids)
def class_equal_array(values: np.ndarray, class_ids: np.ndarray) -> np.ndarray:
values = np.asarray(values, dtype=np.float64)
tail = values.shape[1:]
result = np.empty((NUM_CLASSES,) + tail, dtype=np.float64)
for class_id in range(NUM_CLASSES):
selected = values[class_ids == class_id]
with np.errstate(invalid="ignore"):
result[class_id] = np.nanmean(selected, axis=0, dtype=np.float64)
with np.errstate(invalid="ignore"):
aggregate = np.nanmean(result, axis=0, dtype=np.float64)
if not np.all(np.isfinite(aggregate)):
raise ValueError("class-equal array has cells with no valid class observations")
return aggregate
def optional_class_equal_array(values: np.ndarray, class_ids: np.ndarray) -> np.ndarray:
values = np.asarray(values, dtype=np.float64)
tail = values.shape[1:]
per_class = np.full((NUM_CLASSES,) + tail, np.nan, dtype=np.float64)
for class_id in range(NUM_CLASSES):
selected = values[class_ids == class_id]
with np.errstate(invalid="ignore"):
per_class[class_id] = np.nanmean(selected, axis=0, dtype=np.float64)
with np.errstate(invalid="ignore"):
return np.nanmean(per_class, axis=0, dtype=np.float64)
def image_equal_mean(values: np.ndarray) -> float:
values = np.asarray(values, dtype=np.float64)
finite = values[np.isfinite(values)]
if finite.size == 0:
raise ValueError("image-equal statistic has no valid receiver observations")
return float(finite.mean(dtype=np.float64))
def optional_image_equal_mean(values: np.ndarray) -> float | None:
values = np.asarray(values, dtype=np.float64)
finite = values[np.isfinite(values)]
return float(finite.mean(dtype=np.float64)) if finite.size else None
def image_equal_array(values: np.ndarray) -> np.ndarray:
values = np.asarray(values, dtype=np.float64)
with np.errstate(invalid="ignore"):
aggregate = np.nanmean(values, axis=0, dtype=np.float64)
if not np.all(np.isfinite(aggregate)):
raise ValueError("image-equal array has cells with no valid receiver observations")
return aggregate
def finite_or_none(value: Any) -> float | None:
if value is None:
return None
try:
result = float(value)
except (TypeError, ValueError):
return None
return result if math.isfinite(result) else None
def finite_values(values: Iterable[Any]) -> list[float] | None:
result = [finite_or_none(value) for value in values]
if any(value is None for value in result):
return None
return [float(value) for value in result]
def compare_aggregate_values(left: Any, right: Any) -> tuple[bool, float, int]:
"""Compare aggregate values with strict definedness and NaN-mask equality."""
if left is None or right is None:
return (left is None and right is None, 0.0, 1)
left_array = np.asarray(left)
right_array = np.asarray(right)
if left_array.shape != right_array.shape:
return (False, math.inf, 0)
if left_array.dtype.kind in "biu" and right_array.dtype.kind in "biu":
return (
bool(np.array_equal(left_array, right_array)),
0.0 if np.array_equal(left_array, right_array) else math.inf,
int(left_array.size),
)
if left_array.dtype.kind in "fci" and right_array.dtype.kind in "fci":
left_finite = np.isfinite(left_array)
right_finite = np.isfinite(right_array)
if not np.array_equal(left_finite, right_finite):
return (False, math.inf, int(left_array.size))
if not left_finite.any():
return (True, 0.0, int(left_array.size))
maximum = float(
np.max(
np.abs(
left_array[left_finite].astype(np.complex128)
- right_array[right_finite].astype(np.complex128)
)
)
)
return (math.isfinite(maximum), maximum, int(left_array.size))
equal = bool(np.array_equal(left_array, right_array))
return (equal, 0.0 if equal else math.inf, int(left_array.size))
def compare_block_summary_registries(
left_summary: Mapping[Any, Mapping[str, Any]],
right_summary: Mapping[Any, Mapping[str, Any]],
) -> dict[str, Any]:
"""Compare B summaries while allowing only task/order identity to differ."""
ignored_identity = {"task_id", "order"}
registry_equal = set(left_summary) == set(right_summary)
definedness_equal = True
maximum = 0.0
compared_values = 0
covered_fields: set[str] = set()
for key in sorted(set(left_summary) & set(right_summary)):
left = left_summary[key]
right = right_summary[key]
if set(left) != set(right):
registry_equal = False
for field in sorted((set(left) & set(right)) - ignored_identity):
equal, difference, count = compare_aggregate_values(left[field], right[field])
covered_fields.add(field)
compared_values += count
definedness_equal = definedness_equal and equal
maximum = max(maximum, difference)
return {
"field_registry_identical": registry_equal,
"definedness_equal": definedness_equal,
"maximum_absolute_metric_difference": maximum,
"compared_values": compared_values,
"covered_fields": covered_fields,
}
def complete_nonnegative_rms(values: Any) -> bool:
array = np.asarray(values, dtype=np.float64)
return bool(np.all(np.isfinite(array)) and np.all(array >= 0.0))
def section_11_3_joint_decline(
accuracy_declines: bool,
raw_energy_declines: bool,
normalized_psd_declines: bool,
conditional_transfer_declines: bool,
) -> bool:
return bool(
accuracy_declines
and raw_energy_declines
and normalized_psd_declines
and conditional_transfer_declines
)
def registered_decline_state(left: Any, right: Any) -> str:
values = finite_values((left, right))
if values is None:
return "undefined"
return "decline" if values[0] < values[1] else "not_decline"
def complete_alternate_range(values: Sequence[Any]) -> tuple[float | None, float | None, bool]:
converted = [finite_or_none(value) for value in values]
if len(converted) != 2 or any(value is None for value in converted):
return None, None, False
finite = [float(value) for value in converted]
return min(finite), max(finite), True
def ece_15(confidence: np.ndarray, correct: np.ndarray) -> float:
confidence = np.asarray(confidence, dtype=np.float64)
correct = np.asarray(correct, dtype=np.float64)
edges = np.linspace(0.0, 1.0, 16, dtype=np.float64)
bins = np.minimum(np.searchsorted(edges, confidence, side="right") - 1, 14)
bins = np.maximum(bins, 0)
result = 0.0
for bin_id in range(15):
mask = bins == bin_id
if mask.any():
result += float(mask.mean()) * abs(float(confidence[mask].mean()) - float(correct[mask].mean()))
return 100.0 * result
@dataclass
class TaskData:
task_id: str
arm: str
order: str
root: Path
results: dict[str, Any]
accuracy: dict[str, np.ndarray]
spectral: dict[str, np.ndarray]
accuracy_rows: list[dict[str, Any]]
spectral_rows: list[dict[str, Any]]
block_summary: dict[tuple[str, int, str], dict[str, Any]]
pairing: dict[str, Any]
class AuditValidator:
def __init__(self, root: Path, manifest_path: Path, runner_path: Path) -> None:
self.root = root.resolve()
self.manifest_path = manifest_path.resolve()
self.runner_path = runner_path.resolve()
self.errors: list[str] = []
self.checks: dict[str, dict[str, Any]] = {}
self.manifest: dict[str, Any] = {}
self.tasks: dict[str, TaskData] = {}
def check(self, check_id: str, condition: bool, message: str, **details: Any) -> None:
if check_id in self.checks:
raise RuntimeError(f"duplicate validation check ID: {check_id}")
item: dict[str, Any] = {"passed": bool(condition), "message": message}
if details:
item["details"] = details
self.checks[check_id] = item
if not condition:
self.errors.append(f"{check_id}: {message}")
def attempt(self, check_id: str, function: Any) -> Any:
try:
value = function()
except Exception as error: # Validation must leave a machine-readable reason.
self.check(check_id, False, f"{type(error).__name__}: {error}")
return None
self.check(check_id, True, "passed")
return value
def validate_manifest_and_root(self) -> None:
manifest_digest = file_sha256(self.manifest_path)
self.check(
"manifest.independent_frozen_sha256",
manifest_digest == EXPECTED_INPUT_MANIFEST_SHA256,
"input manifest bytes differ from the independently frozen validator constant",
actual_sha256=manifest_digest,
expected_sha256=EXPECTED_INPUT_MANIFEST_SHA256,
)
if manifest_digest != EXPECTED_INPUT_MANIFEST_SHA256:
raise ValidationFailure("refusing to trust an input manifest with changed bytes")
manifest = load_json(self.manifest_path)
self.manifest = manifest
self.check(
"manifest.protocol_id",
manifest.get("protocol_id") == PROTOCOL_ID,
"input manifest protocol_id must match the frozen protocol",
)
protocol = manifest.get("protocol", {})
protocol_path = Path(str(protocol.get("path", ""))).resolve()
protocol_hash = protocol.get("sha256")
self.check(
"manifest.protocol_hash_format",
valid_sha256(protocol_hash),
"input manifest protocol SHA256 must be lowercase hex",
)
self.check(
"manifest.protocol_file",
protocol_path.is_file() and file_sha256(protocol_path) == protocol_hash,
"protocol path/hash does not match the frozen input manifest",
path=str(protocol_path),
expected_sha256=protocol_hash,
)
runtime = manifest.get("runtime", {})
expected_runtime = {
"torch": FORMAL_TORCH,
"torchvision": FORMAL_TORCHVISION,
"canonical_batch_size": 256,
"spectral_samples": NUM_SPECTRAL_IMAGES,
"max_eval_samples": NUM_IMAGES,
"parallel_tasks": 8,
}
self.check(
"manifest.runtime_contract",
all(runtime.get(key) == value for key, value in expected_runtime.items()),
"input manifest runtime contract changed",
expected=expected_runtime,
)
self.check(
"manifest.task_contract",
tuple(arm.get("arm") for arm in manifest.get("arms", [])) == CANONICAL_ARMS
and {probe.get("task_id") for probe in manifest.get("order_probes", [])}
== {"D_order1", "D_order2", "B_order1"},
"input manifest must register five canonical arms and three order probes",
)
provenance = manifest.get("code_provenance", {})
self.check(
"manifest.independent_training_code_boundaries",
provenance.get("audit_runtime_code_sha256")
== EXPECTED_AUDIT_TRAINING_CODE_SHA256
and provenance.get("alignment_training_code_sha256")
== EXPECTED_ALIGNMENT_TRAINING_CODE_SHA256,
"training code boundaries differ from hardcoded validator constants",
)
provenance_files = {
"audit_runtime_manifest": provenance.get("audit_runtime_manifest"),
"alignment_training_manifest": provenance.get("alignment_training_manifest"),
"alignment_source_snapshot_manifest": provenance.get(
"alignment_source_snapshot_manifest"
),
}
provenance_hash_keys = {
"audit_runtime_manifest": "audit_runtime_manifest_sha256",
"alignment_training_manifest": "alignment_training_manifest_sha256",
"alignment_source_snapshot_manifest": "alignment_source_snapshot_manifest_sha256",
}
provenance_passed = True
provenance_details: dict[str, Any] = {}
for name, path_value in provenance_files.items():
path = Path(str(path_value)).resolve()
expected_hash = provenance.get(provenance_hash_keys[name])
actual_hash = file_sha256(path) if path.is_file() else None
provenance_details[name] = {
"path": str(path),
"expected_sha256": expected_hash,
"actual_sha256": actual_hash,
}
provenance_passed = provenance_passed and actual_hash == expected_hash
source_paths = {
"alignment_source_gmnet_sha256": AUDIT_ROOT
/ "source_snapshots/alignment_4a62/gmnet/models/gmnet.py",
"audit_runtime_gmnet_sha256": Path(
"/nfs/ywang29/GmNet/journal_exp/gmnet/models/gmnet.py"
),
}
for hash_key, path in source_paths.items():
actual_hash = file_sha256(path) if path.is_file() else None
provenance_details[hash_key] = {
"path": str(path),
"expected_sha256": provenance.get(hash_key),
"actual_sha256": actual_hash,
}
provenance_passed = provenance_passed and actual_hash == provenance.get(hash_key)
expected_training_codes = {
"B": provenance.get("audit_runtime_code_sha256"),
"D": provenance.get("audit_runtime_code_sha256"),
"S": provenance.get("alignment_training_code_sha256"),
"C": provenance.get("alignment_training_code_sha256"),
"SC": provenance.get("audit_runtime_code_sha256"),
}
actual_training_codes = {
row.get("arm"): row.get("training_code_sha256")
for row in manifest.get("arms", [])
}
provenance_passed = provenance_passed and actual_training_codes == expected_training_codes
provenance_details["arm_training_code_sha256"] = actual_training_codes
self.check(
"manifest.code_provenance",
provenance_passed,
"training/runtime code manifests or source hashes no longer match",
evidence=provenance_details,
)
actual_dirs = {path.name for path in self.root.iterdir() if path.is_dir()} if self.root.is_dir() else set()
self.check(
"root.task_directories",
set(TASK_ORDER).issubset(actual_dirs),
"one or more required task directories are absent",
missing=sorted(set(TASK_ORDER) - actual_dirs),
)
self.validate_source_equivalence()
def validate_source_equivalence(self) -> None:
path = self.root / "alignment_source_equivalence.json"
if not path.is_file():
self.check(
"root.source_equivalence",
False,
"alignment_source_equivalence.json is required at the audit root",
)
return
try:
evidence = load_json(path)
provenance = self.manifest["code_provenance"]
arms = evidence["arms"]
by_arm = {row["arm"]: row for row in arms}
passed = (
evidence.get("status") == "passed"
and evidence.get("runtime", {}).get("torch") == FORMAL_TORCH
and evidence.get("old_source", {}).get("sha256")
== provenance["alignment_source_gmnet_sha256"]
and evidence.get("new_source", {}).get("sha256")
== provenance["audit_runtime_gmnet_sha256"]
and set(by_arm) == {"B", "S", "C"}
)
for arm in by_arm.values():
passed = passed and all(
arm.get(field) is True
for field in (
"forward_bitwise_equal",
"input_gradient_bitwise_equal",
"parameter_gradients_bitwise_equal",
)
)
passed = passed and all(float(value) == 0.0 for value in arm["maximum_abs"].values())
passed = passed and arm.get("parameter_count") == 7_791_544
passed = passed and arm.get("state_tensor_count") == 365
semantics = evidence.get("explicit_stop_gradient_semantics", {})
passed = passed and all(
semantics.get(key) is True
for key in (
"baseline_matches_full_formula",
"stop_gradient_matches_detached_formula",
"stop_vs_baseline_derivative_differs",
)
) and float(semantics.get("maximum_abs_error", math.inf)) == 0.0
except Exception as error:
self.check("root.source_equivalence", False, f"invalid source-equivalence evidence: {error}")
return
self.check(
"root.source_equivalence",
bool(passed),
"formal torch-2.9 old/new source equivalence did not pass exactly",
sha256=file_sha256(path),
)
def validate_all_tasks(self) -> None:
for task_id in TASK_ORDER:
task = self.attempt(
f"task.{task_id}.artifacts",
lambda task_id=task_id: self.validate_task(task_id),
)
if task is not None:
self.tasks[task_id] = task
def validate_task(self, task_id: str) -> TaskData:
root = self.root / task_id
arm, order = EXPECTED_TASK[task_id]
missing = [name for name in REQUIRED_TASK_FILES if not (root / name).is_file()]
if missing:
raise ValueError(f"missing required task artifacts: {missing}")
if (root / "COMPLETE").read_text(encoding="ascii") != "complete\n":
raise ValueError("task COMPLETE marker is not canonical")
self.verify_source_hashes(root)
results = load_json(root / "results.json")
required_result_keys = {
"schema_version",
"protocol_id",
"task_id",
"arm",
"order",
"status",
"formal",
"task_contract",
"paths",
"hashes",
"checks",
"accuracy",
"spectral",
"batch_pairing",
"timestamps",
"official_replay",
"lowpass_fixtures",
"numerical_self_tests",
"task_frequency_summary",
}
missing_results = sorted(required_result_keys - set(results))
if missing_results:
raise ValueError(f"results.json missing fields: {missing_results}")
if (
results["schema_version"] != 1
or results["protocol_id"] != PROTOCOL_ID
or results["task_id"] != task_id
or results["arm"] != arm
or results["order"] != order
or results["status"] != "complete"
or results["formal"] is not True
):
raise ValueError("results.json task identity/status/formal contract mismatch")
self.validate_task_hashes(task_id, root, results)
self.validate_task_metadata(task_id, root, results)
self.validate_environment(task_id, root, results)
self.validate_task_checks(task_id, results)
self.validate_numerical_evidence(task_id, results)
self.validate_intervention(task_id, results)
subset_rows, subset_hash = self.validate_subset(root / "subset_manifest.jsonl")
if results["hashes"]["subset_manifest_sha256"] != subset_hash:
raise ValueError("results subset_manifest_sha256 mismatch")
accuracy = self.validate_accuracy_npz(task_id, root, results)
spectral = self.validate_spectral_npz(task_id, root, subset_rows)
accuracy_rows = self.validate_accuracy_csv(task_id, root, accuracy, results)
block_summary = self.summarize_task_spectral(task_id, spectral)
spectral_rows = self.validate_spectral_csv(task_id, root, block_summary)
self.validate_stage_csv(task_id, root, block_summary)
self.validate_task_transfer_npz(root, block_summary)
pairing = self.validate_pairing(task_id, root, accuracy, results)
return TaskData(
task_id=task_id,
arm=arm,
order=order,
root=root,
results=results,
accuracy=accuracy,
spectral=spectral,
accuracy_rows=accuracy_rows,
spectral_rows=spectral_rows,
block_summary=block_summary,
pairing=pairing,
)
def verify_source_hashes(self, task_root: Path) -> None:
path = task_root / "source_artifacts.sha256"
entries: dict[str, str] = {}
for line_number, line in enumerate(path.read_text(encoding="utf-8").splitlines(), start=1):
if not line or " " not in line:
raise ValueError(f"malformed source_artifacts.sha256 line {line_number}")
digest, relative = line.split(" ", 1)
if not valid_sha256(digest) or not relative or relative in entries:
raise ValueError(f"invalid or duplicate hash entry on line {line_number}")
relative_path = Path(relative)
if relative_path.is_absolute() or ".." in relative_path.parts:
raise ValueError(f"unsafe artifact path: {relative}")
target = (task_root / relative_path).resolve()
if task_root.resolve() not in target.parents:
raise ValueError(f"artifact hash escapes task root: {relative}")
if not target.is_file() or file_sha256(target) != digest:
raise ValueError(f"artifact hash mismatch: {relative}")
entries[relative] = digest
required_hashed = set(REQUIRED_TASK_FILES) - {"source_artifacts.sha256", "COMPLETE"}
missing = sorted(required_hashed - set(entries))
if missing:
raise ValueError(f"source_artifacts.sha256 omits required files: {missing}")
def manifest_arm(self, arm: str) -> dict[str, Any]:
rows = [row for row in self.manifest["arms"] if row["arm"] == arm]
if len(rows) != 1:
raise ValueError(f"manifest arm lookup is not unique: {arm}")
return rows[0]
def validate_task_hashes(self, task_id: str, root: Path, results: dict[str, Any]) -> None:
arm, _ = EXPECTED_TASK[task_id]
manifest_arm = self.manifest_arm(arm)
hashes = results["hashes"]
required = {
"input_manifest_sha256",
"protocol_sha256",
"runner_sha256",
"checkpoint_sha256",
"config_source_sha256",
"data_manifest_sha256",
"subset_manifest_sha256",
"order_indices_sha256",
"per_image_accuracy_sha256",
"per_image_spectral_sha256",
}
missing = sorted(required - set(hashes))
if missing:
raise ValueError(f"results hashes missing fields: {missing}")
if not all(valid_sha256(hashes[key]) for key in required):
raise ValueError("results contains malformed SHA256 values")
expected = {
"input_manifest_sha256": file_sha256(self.manifest_path),
"protocol_sha256": self.manifest["protocol"]["sha256"],
"runner_sha256": file_sha256(self.runner_path),
"checkpoint_sha256": manifest_arm["checkpoint_sha256"],
"config_source_sha256": manifest_arm["config_source_sha256"],
"data_manifest_sha256": self.manifest["dataset"]["evaluation_manifest_sha256"],
"per_image_accuracy_sha256": file_sha256(root / "per_image_accuracy.npz"),
"per_image_spectral_sha256": file_sha256(root / "per_image_spectral.npz"),
}
mismatches = {
key: {"actual": hashes[key], "expected": value}
for key, value in expected.items()
if hashes[key] != value
}
if mismatches:
raise ValueError(f"results hash contract mismatch: {mismatches}")
def validate_environment(self, task_id: str, root: Path, results: dict[str, Any]) -> None:
environment = load_json(root / "environment.json")
required = {
"schema_version",
"protocol_id",
"task_id",
"python",
"torch",
"torchvision",
"cuda",
"cuda_available",
"gpu_name",
"device_count",
"container_image",
"deterministic_algorithms",
"cudnn_benchmark",
"cudnn_deterministic",
"packages",
"package_lock",
"source_hashes",
}
missing = sorted(required - set(environment))
if missing:
raise ValueError(f"environment.json missing fields: {missing}")
expected_image = self.manifest["runtime"]["docker_image"]
if not (
environment["schema_version"] == 1
and environment["protocol_id"] == PROTOCOL_ID
and environment["task_id"] == task_id
and environment["torch"] == FORMAL_TORCH
and environment["torchvision"] == FORMAL_TORCHVISION
and environment["cuda"] == FORMAL_CUDA
and environment["cuda_available"] is True
and environment["device_count"] == 1
and "A100" in str(environment["gpu_name"])
and environment["container_image"] == expected_image
):
raise ValueError("formal environment identity mismatch")
if results["checks"].get("environment_exact") is not True:
raise ValueError("task did not assert environment_exact")
package_lock = environment["package_lock"]
if not isinstance(package_lock, dict) or set(package_lock) != {
"format",
"entry_count",
"entries",
"sha256",
}:
raise ValueError("environment package_lock schema changed")
entries = package_lock["entries"]
if (
package_lock["format"]
!= "pep503-normalized-project==version; UTF-8; LF; sorted"
or not isinstance(entries, list)
or not entries
or not all(isinstance(entry, str) for entry in entries)
or entries != sorted(set(entries))
or package_lock["entry_count"] != len(entries)
):
raise ValueError("environment package_lock ordering/count contract failed")
entry_pattern = re.compile(r"^[a-z0-9]+(?:-[a-z0-9]+)*==[^=\r\n]+$")
if not all(entry_pattern.fullmatch(entry) for entry in entries):
raise ValueError("environment package_lock has a non-PEP503 entry")
serialization = "".join(f"{entry}\n" for entry in entries).encode("utf-8")
if package_lock["sha256"] != bytes_sha256(serialization):
raise ValueError("environment package_lock SHA256 mismatch")
def validate_task_metadata(
self, task_id: str, root: Path, results: dict[str, Any]
) -> None:
arm, _ = EXPECTED_TASK[task_id]
contract = self.manifest_arm(arm)
protocol = load_json(root / "protocol.json")
constants = protocol.get("constants", {})
if not (
protocol.get("schema_version") == 1
and protocol.get("protocol_id") == PROTOCOL_ID
and protocol.get("protocol_path") == self.manifest["protocol"]["path"]
and protocol.get("protocol_sha256") == self.manifest["protocol"]["sha256"]
and protocol.get("input_manifest_sha256") == file_sha256(self.manifest_path)
and constants.get("batch_size") == 256
and constants.get("high_frequency_split") == 0.5
and constants.get("lowpass_order") == 4
and constants.get("max_eval_samples") == NUM_IMAGES
and constants.get("spectral_samples") == NUM_SPECTRAL_IMAGES
and constants.get("radial_band_edges") == [0.0, 0.25, 0.5, 0.75, 1.0]
and constants.get("lowpass_cutoffs")
== self.manifest["runtime"]["lowpass_cutoffs"]
):
raise ValueError(
"task protocol.json differs from the frozen protocol binding or numerical constants"
)
checkpoint = load_json(root / "checkpoint_manifest.json")
expected_checkpoint = {
"schema_version": 1,
"protocol_id": PROTOCOL_ID,
"task_id": task_id,
"arm": arm,
"checkpoint_sha256": contract["checkpoint_sha256"],
"config_source_sha256": contract["config_source_sha256"],
"official_results_sha256": contract["official_results_sha256"],
"official_checks_sha256": contract["official_checks_sha256"],
"official_per_sample_sha256": contract["official_per_sample_sha256"],
}
mismatches = {
key: {"actual": checkpoint.get(key), "expected": value}
for key, value in expected_checkpoint.items()
if checkpoint.get(key) != value
}
if mismatches:
raise ValueError(f"checkpoint manifest identity mismatch: {mismatches}")
topology = checkpoint.get("topology", {})
if not (
topology.get("parameter_count") == self.manifest["topology"]["parameter_count"]
and topology.get("state_tensor_count") == self.manifest["topology"]["state_tensor_count"]
and topology.get("model_state_schema_sha256")
== self.manifest["topology"]["model_state_schema_sha256"]
):
raise ValueError("checkpoint topology/state schema mismatch")
artifacts = load_json(root / "artifacts.json")
hashes = artifacts.get("sha256")
if artifacts.get("schema_version") != 1 or not isinstance(hashes, dict):
raise ValueError("artifacts.json schema is invalid")
for name, digest in hashes.items():
if not isinstance(name, str) or not valid_sha256(digest):
raise ValueError("artifacts.json contains malformed entries")
path = root / name
if not path.is_file() or file_sha256(path) != digest:
raise ValueError(f"artifacts.json hash mismatch: {name}")
data = load_json(root / "data_manifest.json")
dataset_contract = self.manifest["dataset"]
expected_data = {
"samples": NUM_IMAGES,
"num_classes": NUM_CLASSES,
"class_to_idx_sha256": dataset_contract["class_to_idx_sha256"],
"sample_index_sha256": dataset_contract["val_sample_index_sha256"],
"sampled_content_sha256": dataset_contract["val_sampled_content_sha256"],
"sampled_content_samples": dataset_contract["val_sampled_content_samples"],
"evaluation_manifest_sha256": dataset_contract["evaluation_manifest_sha256"],
}
data_mismatches = {
key: {"actual": data.get(key), "expected": value}
for key, value in expected_data.items()
if data.get(key) != value
}
if data_mismatches:
raise ValueError(f"data_manifest.json identity mismatch: {data_mismatches}")
provenance = load_json(root / "source_provenance.json")
required_provenance = {
"runner",
"protocol",
"input_manifest",
"checkpoint",
"config_source",
"official_results",
"official_checks",
"official_per_sample",
"gmnet_model",
}
if set(provenance) != required_provenance:
raise ValueError("source_provenance.json key set changed")
for name, row in provenance.items():
if not isinstance(row, dict) or not valid_sha256(row.get("sha256")):
raise ValueError(f"source provenance entry {name} is malformed")
source = Path(str(row.get("path", ""))).resolve()
if not source.is_file() or file_sha256(source) != row["sha256"]:
raise ValueError(f"source provenance entry {name} no longer verifies")
@staticmethod
def validate_task_checks(task_id: str, results: dict[str, Any]) -> None:
required_true = (
"environment_exact",
"subset_valid",
"blocks_complete",
"fft_dct_self_tests_passed",
"gate_reconstruction_passed",
"mapping_passed",
)
missing = [key for key in required_true if results["checks"].get(key) is not True]
if missing:
raise ValueError(f"task checks are absent or false: {missing}")
replay = results["checks"].get("official_replay_discrete_exact")
if task_id in {"D_order1", "D_order2"}:
if not isinstance(replay, bool):
raise ValueError("D order probes must record a boolean replay comparison")
elif replay is not True:
raise ValueError("canonical arms and B_order1 must exactly replay official discrete outputs")
@staticmethod
def validate_numerical_evidence(task_id: str, results: dict[str, Any]) -> None:
tests = results["numerical_self_tests"]
if tests.get("passed") is not True:
raise ValueError("registered numerical self-tests did not pass")
for basis in BASES:
row = tests.get(basis, {})
if not (
row.get("passed") is True
and float(row.get("constant_gate_m_off", math.inf)) <= 1e-6
and float(row.get("parseval_relative_error", math.inf)) <= 1e-10
and float(row.get("reconstruction_relative_l2", math.inf)) <= 1e-10
):
raise ValueError(f"{basis} numerical transform self-test exceeded tolerance")
lowpass = tests.get("lowpass", {})
if not (
lowpass.get("passed") is True
and float(lowpass.get("relative_imaginary_l2", math.inf)) <= 1e-10
and valid_sha256(lowpass.get("fixture_sha256"))
):
raise ValueError("low-pass numerical self-test failed")
spectral_tests = results["spectral"].get("self_tests", {})
if int(spectral_tests.get("gate_reconstruction_batches_min", 0)) <= 0:
raise ValueError("gate reconstruction was not checked on every block")
for basis in BASES:
if not (
float(
spectral_tests.get(f"{basis}_reconstruction_relative_l2_max", math.inf)
)
<= 1e-10
and float(
spectral_tests.get(f"{basis}_parseval_relative_error_max", math.inf)
)
<= 1e-10
):
raise ValueError(f"{basis} observed-feature transform checks exceeded tolerance")
fixtures = results["lowpass_fixtures"]
expected_fixture_names = set(EXPECTED_CONDITIONS[1:]) if task_id in CANONICAL_ARMS else set()
if set(fixtures) != expected_fixture_names:
raise ValueError("low-pass fixture condition coverage mismatch")
for name, row in fixtures.items():
if not (
float(row.get("relative_imaginary_l2", math.inf)) <= 1e-10
and valid_sha256(row.get("first_image_sha256"))
):
raise ValueError(f"low-pass fixture {name} failed")
def validate_intervention(self, task_id: str, results: dict[str, Any]) -> None:
arm, _ = EXPECTED_TASK[task_id]
intervention = results["task_contract"].get("intervention")
if not isinstance(intervention, dict):
raise ValueError("task_contract.intervention must be an object")
required = {"name", "channel_permutation_manifest_sha256", "gate_input_semantics"}
if not required.issubset(intervention):
raise ValueError("task_contract.intervention is missing frozen fields")
if intervention["name"] != self.manifest_arm(arm)["gate_intervention"]:
raise ValueError("intervention name mismatch")
expected_perm = FROZEN_CHANNEL_PERMUTATION_SHA256 if arm in {"C", "SC"} else None
if intervention["channel_permutation_manifest_sha256"] != expected_perm:
raise ValueError("channel permutation manifest mismatch")
if not isinstance(intervention["gate_input_semantics"], str) or not intervention["gate_input_semantics"]:
raise ValueError("gate_input_semantics must be nonempty")
def validate_subset(self, path: Path) -> tuple[list[dict[str, Any]], str]:
rows: list[dict[str, Any]] = []
for line_number, line in enumerate(path.read_text(encoding="utf-8").splitlines(), start=1):
try:
row = json.loads(
line,
parse_constant=_reject_constant,
object_pairs_hook=_object_no_duplicates,
)
except Exception as error:
raise ValueError(f"invalid subset JSONL line {line_number}: {error}") from error
required = {
"canonical_index",
"relative_path",
"class_id",
"selection_sha256",
"within_class_rank",
"selection_kind",
}
if not isinstance(row, dict) or not required.issubset(row):
raise ValueError(f"subset line {line_number} is missing fields")
rows.append(row)
if len(rows) != NUM_SPECTRAL_IMAGES:
raise ValueError(f"spectral subset has {len(rows)} rows")
indices = [row["canonical_index"] for row in rows]
if len(set(indices)) != NUM_SPECTRAL_IMAGES or not all(
isinstance(index, int) and 0 <= index < NUM_IMAGES for index in indices
):
raise ValueError("spectral subset canonical indices are invalid or duplicated")
histogram = Counter(row["class_id"] for row in rows)
if set(histogram) != set(range(NUM_CLASSES)):
raise ValueError("spectral subset does not cover all ImageNet classes")
count_histogram = Counter(histogram.values())
if count_histogram != Counter({4: 904, 5: 96}):
raise ValueError(f"spectral subset class balance mismatch: {count_histogram}")
prefix = b"gmnet-e4-spectral-v1\0"
paths: set[str] = set()
ranks_by_class: dict[int, set[int]] = {class_id: set() for class_id in range(NUM_CLASSES)}
extra_classes: set[int] = set()
for row in rows:
relative_path = row["relative_path"]
if not isinstance(relative_path, str) or not relative_path or relative_path in paths:
raise ValueError("spectral subset relative paths are invalid or duplicated")
paths.add(relative_path)
expected_hash = hashlib.sha256(prefix + relative_path.encode("utf-8")).hexdigest()
if row["selection_sha256"] != expected_hash:
raise ValueError("spectral subset selection hash mismatch")
rank = row["within_class_rank"]
if not isinstance(rank, int) or rank not in range(1, 6):
raise ValueError("spectral subset rank is outside 1..5")
expected_kind = "base_four" if rank <= 4 else "extra_fifth"
if row["selection_kind"] != expected_kind:
raise ValueError("spectral subset selection_kind disagrees with rank")
ranks_by_class[int(row["class_id"])].add(rank)
if rank == 5:
extra_classes.add(int(row["class_id"]))
if any(ranks_by_class[class_id] != set(range(1, histogram[class_id] + 1)) for class_id in range(NUM_CLASSES)):
raise ValueError("spectral subset within-class ranks are incomplete or duplicated")
extra_prefix = b"gmnet-e4-spectral-extra-v1\0"
expected_extra = set(
sorted(
range(NUM_CLASSES),
key=lambda class_id: (
hashlib.sha256(extra_prefix + f"{class_id:04d}".encode("ascii")).digest(),
class_id,
),
)[:96]
)
if extra_classes != expected_extra:
raise ValueError("spectral subset extra-fifth class selection changed")
actual_hash = file_sha256(path)
frozen = self.manifest["spectral_subset"]
frozen_path = Path(frozen["artifact_path"]).resolve()
if actual_hash != frozen["sha256"] or file_sha256(frozen_path) != frozen["sha256"]:
raise ValueError("task subset differs from the input-manifest frozen subset")
if path.read_bytes() != frozen_path.read_bytes():
raise ValueError("task subset bytes differ from the frozen shared artifact")
return rows, actual_hash
def validate_accuracy_npz(
self, task_id: str, root: Path, results: dict[str, Any]
) -> dict[str, np.ndarray]:
required = (
"evaluation_position",
"canonical_index",
"target",
"condition_names",
"top1_correct",
"top5_correct",
"nll",
"prediction",
"confidence",
)
arrays = load_npz(root / "per_image_accuracy.npz", required)
conditions = unicode_tuple(arrays["condition_names"], "condition_names")
expected_conditions = EXPECTED_CONDITIONS if task_id in CANONICAL_ARMS else ("unfiltered",)
if conditions != expected_conditions:
raise ValueError(f"condition_names {conditions} != {expected_conditions}")
condition_count = len(conditions)
vector_fields = {
"evaluation_position": "int64",
"canonical_index": "int64",
"target": "int16",
}
for name, dtype in vector_fields.items():
require_shape(arrays[name], (NUM_IMAGES,), name)
require_dtype(arrays[name], dtype, name)
matrix_fields = {
"top1_correct": "bool",
"top5_correct": "bool",
"nll": "float32",
"prediction": "int16",
"confidence": "float32",
}
for name, dtype in matrix_fields.items():
require_shape(arrays[name], (condition_count, NUM_IMAGES), name)
require_dtype(arrays[name], dtype, name)
if not np.array_equal(arrays["evaluation_position"], np.arange(NUM_IMAGES, dtype=np.int64)):
raise ValueError("evaluation_position is not exactly 0..49999")
expected_order = canonical_order(EXPECTED_TASK[task_id][1])
if not np.array_equal(arrays["canonical_index"], expected_order):
raise ValueError("canonical_index does not match the registered dataset order")
if results["hashes"]["order_indices_sha256"] != int64_sha256(expected_order):
raise ValueError("order_indices_sha256 does not bind the registered order")
if not np.array_equal(np.sort(arrays["canonical_index"]), np.arange(NUM_IMAGES)):
raise ValueError("accuracy artifact is not a permutation of 50,000 canonical indices")
if np.any(arrays["target"] < 0) or np.any(arrays["target"] >= NUM_CLASSES):
raise ValueError("accuracy targets are outside 0..999")
if np.any(arrays["prediction"] < 0) or np.any(arrays["prediction"] >= NUM_CLASSES):
raise ValueError("accuracy predictions are outside 0..999")
if not np.all(np.isfinite(arrays["nll"])) or np.any(arrays["nll"] < 0):
raise ValueError("accuracy NLL contains invalid values")
if not np.all(np.isfinite(arrays["confidence"])) or np.any(arrays["confidence"] < 0) or np.any(arrays["confidence"] > 1):
raise ValueError("accuracy confidence contains invalid values")
arm, order = EXPECTED_TASK[task_id]
if order == "canonical" or task_id == "B_order1":
self.validate_official_per_sample(task_id, arrays)
manifest_arm = self.manifest_arm(arm)
if int(arrays["top1_correct"][0].sum()) != manifest_arm["official_top1_correct"]:
raise ValueError("unfiltered Top-1 integer count differs from the official certificate")
if int(arrays["top5_correct"][0].sum()) != manifest_arm["official_top5_correct"]:
raise ValueError("unfiltered Top-5 integer count differs from the official certificate")
return arrays
def validate_official_per_sample(
self, task_id: str, arrays: dict[str, np.ndarray]
) -> None:
arm, _ = EXPECTED_TASK[task_id]
contract = self.manifest_arm(arm)
official_path = Path(contract["official_per_sample"]).resolve()
if file_sha256(official_path) != contract["official_per_sample_sha256"]:
raise ValueError("official per-sample artifact hash mismatch")
order = np.argsort(arrays["canonical_index"])
exact = {
"sample_index": arrays["canonical_index"][order],
"target": arrays["target"][order],
"prediction": arrays["prediction"][0, order],
"correct": arrays["top1_correct"][0, order],
"top5_correct": arrays["top5_correct"][0, order],
}
with np.load(official_path, allow_pickle=False) as official:
for field, current in exact.items():
if not np.array_equal(official[field], current):
raise ValueError(f"official per-sample discrete replay differs in {field}")
confidence_max_abs = float(
np.max(
np.abs(
official["confidence"].astype(np.float64)
- arrays["confidence"][0, order].astype(np.float64)
)
)
)
nll_max_abs = float(
np.max(
np.abs(
official["nll"].astype(np.float64)
- arrays["nll"][0, order].astype(np.float64)
)
)
)
self.checks[f"task.{task_id}.official_float_drift"] = {
"passed": True,
"message": "recorded; discrete replay is exact",
"details": {
"confidence_max_abs": confidence_max_abs,
"nll_max_abs": nll_max_abs,
},
}
def recompute_accuracy_rows(
self, task_id: str, arrays: dict[str, np.ndarray]
) -> list[dict[str, Any]]:
arm, order = EXPECTED_TASK[task_id]
clean_top1 = float(arrays["top1_correct"][0].mean(dtype=np.float64) * 100.0)
clean_top5 = float(arrays["top5_correct"][0].mean(dtype=np.float64) * 100.0)
rows: list[dict[str, Any]] = []
for condition_index, condition in enumerate(arrays["condition_names"].tolist()):
correct = arrays["top1_correct"][condition_index]
top5_correct = arrays["top5_correct"][condition_index]
top1 = float(correct.mean(dtype=np.float64) * 100.0)
top5 = float(top5_correct.mean(dtype=np.float64) * 100.0)
cutoff = "" if condition == "unfiltered" else float(condition.removeprefix("lowpass_"))
rows.append(
{
"task_id": task_id,
"arm": arm,
"order": order,
"condition": str(condition),
"cutoff": cutoff,
"samples": NUM_IMAGES,
"top1_correct": int(correct.sum()),
"top5_correct": int(top5_correct.sum()),
"top1": top1,
"top5": top5,
"nll": float(arrays["nll"][condition_index].mean(dtype=np.float64)),
"ece": ece_15(arrays["confidence"][condition_index], correct),
"top1_drop": clean_top1 - top1,
"top5_drop": clean_top5 - top5,
}
)
return rows
def validate_accuracy_csv(
self,
task_id: str,
root: Path,
arrays: dict[str, np.ndarray],
results: dict[str, Any],
) -> list[dict[str, Any]]:
observed = read_csv(root / "accuracy_by_condition.csv", ACCURACY_COLUMNS)
expected = self.recompute_accuracy_rows(task_id, arrays)
if len(observed) != len(expected):
raise ValueError("accuracy CSV row count mismatch")
for row_index, (actual, target) in enumerate(zip(observed, expected, strict=True)):
for key in ("task_id", "arm", "order", "condition"):
if actual[key] != str(target[key]):
raise ValueError(f"accuracy CSV row {row_index} differs in {key}")
for key in ("samples", "top1_correct", "top5_correct"):
if int(actual[key]) != int(target[key]):
raise ValueError(f"accuracy CSV row {row_index} differs in {key}")
for key in ("top1", "top5", "nll", "ece", "top1_drop", "top5_drop"):
if not math.isclose(float(actual[key]), float(target[key]), rel_tol=1e-10, abs_tol=1e-10):
raise ValueError(f"accuracy CSV row {row_index} differs in {key}")
expected_cutoff = target["cutoff"]
if expected_cutoff == "":
if actual["cutoff"] != "":
raise ValueError("unfiltered cutoff cell must be empty")
elif not math.isclose(float(actual["cutoff"]), float(expected_cutoff), abs_tol=1e-15):
raise ValueError("accuracy CSV cutoff mismatch")
summary = results["accuracy"]
if set(summary) != set(arrays["condition_names"].tolist()):
raise ValueError("results.accuracy condition coverage mismatch")
key_map = {
"samples": "samples",
"top1_correct": "top1_correct",
"top5_correct_count": "top5_correct",
"top1": "top1",
"top5": "top5",
"nll": "nll",
"ece": "ece",
"top1_drop_from_unfiltered": "top1_drop",
"top5_drop_from_unfiltered": "top5_drop",
}
by_condition = {row["condition"]: row for row in expected}
for condition, row in summary.items():
target = by_condition[condition]
for source_key, target_key in key_map.items():
if source_key not in row:
raise ValueError(f"results.accuracy.{condition} misses {source_key}")
left = row[source_key]
right = target[target_key]
if isinstance(right, int):
if int(left) != right:
raise ValueError(f"results.accuracy.{condition}.{source_key} mismatch")
elif not math.isclose(float(left), float(right), rel_tol=1e-10, abs_tol=1e-10):
raise ValueError(f"results.accuracy.{condition}.{source_key} mismatch")
frequency = results["task_frequency_summary"]
if task_id not in CANONICAL_ARMS:
if frequency is not None:
raise ValueError("order probes must not emit a low-pass task-frequency AUC")
else:
if not isinstance(frequency, dict):
raise ValueError("canonical arm is missing task_frequency_summary")
cutoffs = np.asarray(self.manifest["runtime"]["lowpass_cutoffs"], dtype=np.float64)
log_cutoffs = np.log2(cutoffs)
top1_values = np.asarray(
[by_condition[f"lowpass_{cutoff:g}"]["top1"] for cutoff in cutoffs],
dtype=np.float64,
)
top5_values = np.asarray(
[by_condition[f"lowpass_{cutoff:g}"]["top5"] for cutoff in cutoffs],
dtype=np.float64,
)
span = float(log_cutoffs[-1] - log_cutoffs[0])
top1_auc = float(np.trapezoid(top1_values, log_cutoffs))
top5_auc = float(np.trapezoid(top5_values, log_cutoffs))
expected_frequency: dict[str, Any] = {
"abscissa": "log2_cutoff",
"cutoffs": cutoffs.tolist(),
"top1_trapezoidal_auc": top1_auc,
"top5_trapezoidal_auc": top5_auc,
"top1_auc_normalized_by_log_span": top1_auc / span,
"top5_auc_normalized_by_log_span": top5_auc / span,
}
if frequency.get("abscissa") != expected_frequency["abscissa"] or frequency.get(
"cutoffs"
) != expected_frequency["cutoffs"]:
raise ValueError("task-frequency abscissa/cutoff grid mismatch")
for key in (
"top1_trapezoidal_auc",
"top5_trapezoidal_auc",
"top1_auc_normalized_by_log_span",
"top5_auc_normalized_by_log_span",
):
if not math.isclose(
float(frequency.get(key, math.nan)),
float(expected_frequency[key]),
rel_tol=1e-12,
abs_tol=1e-12,
):
raise ValueError(f"task-frequency summary differs in {key}")
return expected
def validate_spectral_npz(
self, task_id: str, root: Path, subset_rows: list[dict[str, Any]]
) -> dict[str, np.ndarray]:
required = [
"canonical_index",
"class_id",
"signal_names",
"coherence_names",
"block_global_index",
"block_stage",
"block_within_stage",
"signal_centered_rms",
"signal_log10_centered_energy",
"signal_log10_centered_energy_valid_channels",
"signal_noncentered_rms",
"gate_mean",
"gate_cv",
"gate_zero_fraction",
"gate_active_fraction",
"gate_clip_crossing_fraction",
"coherence_mean",
"coherence_valid_channels",
"projection_residual",
"projection_residual_conditional",
"projection_residual_conditional_valid_channels",
"projection_suppressed_fraction",
"constant_gate_fraction",
"constant_gate_count",
]
for basis in BASES:
required.extend(
[
f"{basis}_psd_high_fraction",
f"{basis}_psd_centroid",
f"{basis}_psd_entropy",
f"{basis}_psd_valid_channels",
f"{basis}_jsd_xy",
f"{basis}_jsd_valid_channels",
f"{basis}_transfer_primary",
f"{basis}_transfer_conditional",
f"{basis}_transfer_source_valid",
f"{basis}_transfer_source_suppressed",
f"{basis}_output_minus_carrier_high_fraction",
f"{basis}_output_minus_carrier_centroid",
f"{basis}_output_minus_carrier_valid_channels",
]
)
arrays = load_npz(root / "per_image_spectral.npz", required)
if unicode_tuple(arrays["signal_names"], "signal_names") != SIGNAL_NAMES:
raise ValueError("spectral signal_names changed")
if unicode_tuple(arrays["coherence_names"], "coherence_names") != COHERENCE_NAMES:
raise ValueError("spectral coherence_names changed")
metadata = {
"canonical_index": ((NUM_SPECTRAL_IMAGES,), "int64"),
"class_id": ((NUM_SPECTRAL_IMAGES,), "int16"),
"block_global_index": ((NUM_BLOCKS,), "int8"),
"block_stage": ((NUM_BLOCKS,), "int8"),
"block_within_stage": ((NUM_BLOCKS,), "int8"),
}
for name, (shape, dtype) in metadata.items():
require_shape(arrays[name], shape, name)
require_dtype(arrays[name], dtype, name)
expected_subset_indices = np.asarray(
[row["canonical_index"] for row in subset_rows], dtype=np.int64
)
expected_subset_classes = np.asarray([row["class_id"] for row in subset_rows], dtype=np.int16)
if not np.array_equal(arrays["canonical_index"], expected_subset_indices):
raise ValueError("spectral canonical indices differ from subset_manifest.jsonl")
if not np.array_equal(arrays["class_id"], expected_subset_classes):
raise ValueError("spectral class IDs differ from subset_manifest.jsonl")
if not np.array_equal(arrays["block_global_index"], np.arange(NUM_BLOCKS, dtype=np.int8)):
raise ValueError("spectral global block sequence changed")
if tuple(arrays["block_stage"].tolist()) != EXPECTED_STAGES:
raise ValueError("spectral 1-based stage sequence changed")
if tuple(arrays["block_within_stage"].tolist()) != EXPECTED_STAGE_BLOCKS:
raise ValueError("spectral 1-based block-within-stage sequence changed")
signal_shape = (NUM_SPECTRAL_IMAGES, NUM_BLOCKS, len(SIGNAL_NAMES))
block_shape = (NUM_SPECTRAL_IMAGES, NUM_BLOCKS)
for name in (
"signal_centered_rms",
"signal_log10_centered_energy",
"signal_noncentered_rms",
):
require_shape(arrays[name], signal_shape, name)
require_dtype(arrays[name], "float64", name)
require_shape(
arrays["signal_log10_centered_energy_valid_channels"],
signal_shape,
"signal_log10_centered_energy_valid_channels",
)
require_dtype(
arrays["signal_log10_centered_energy_valid_channels"],
"int32",
"signal_log10_centered_energy_valid_channels",
)
for name in (
"gate_mean",
"gate_cv",
"gate_zero_fraction",
"gate_active_fraction",
"gate_clip_crossing_fraction",
"projection_residual",
"projection_residual_conditional",
"projection_suppressed_fraction",
"constant_gate_fraction",
):
require_shape(arrays[name], block_shape, name)
require_dtype(arrays[name], "float64", name)
for name in (
"projection_residual_conditional_valid_channels",
"constant_gate_count",
):
require_shape(arrays[name], block_shape, name)
require_dtype(arrays[name], "int32", name)
require_shape(arrays["coherence_mean"], block_shape + (2,), "coherence_mean")
require_dtype(arrays["coherence_mean"], "float64", "coherence_mean")
require_shape(arrays["coherence_valid_channels"], block_shape + (2,), "coherence_valid_channels")
require_dtype(arrays["coherence_valid_channels"], "int32", "coherence_valid_channels")
for basis in BASES:
for metric in ("high_fraction", "centroid", "entropy"):
name = f"{basis}_psd_{metric}"
require_shape(arrays[name], signal_shape, name)
require_dtype(arrays[name], "float64", name)
valid_name = f"{basis}_psd_valid_channels"
require_shape(arrays[valid_name], signal_shape, valid_name)
require_dtype(arrays[valid_name], "int32", valid_name)
jsd_name = f"{basis}_jsd_xy"
require_shape(arrays[jsd_name], block_shape, jsd_name)
require_dtype(arrays[jsd_name], "float64", jsd_name)
jsd_valid_name = f"{basis}_jsd_valid_channels"
require_shape(arrays[jsd_valid_name], block_shape, jsd_valid_name)
require_dtype(arrays[jsd_valid_name], "int32", jsd_valid_name)
for kind in ("primary", "conditional"):
name = f"{basis}_transfer_{kind}"
require_shape(arrays[name], block_shape + (NUM_BANDS, NUM_BANDS), name)
require_dtype(arrays[name], "float64", name)
for kind in ("valid", "suppressed"):
name = f"{basis}_transfer_source_{kind}"
require_shape(arrays[name], block_shape + (NUM_BANDS,), name)
require_dtype(arrays[name], "int32", name)
for metric in ("high_fraction", "centroid"):
name = f"{basis}_output_minus_carrier_{metric}"
require_shape(arrays[name], block_shape, name)
require_dtype(arrays[name], "float64", name)
paired_valid_name = f"{basis}_output_minus_carrier_valid_channels"
require_shape(arrays[paired_valid_name], block_shape, paired_valid_name)
require_dtype(arrays[paired_valid_name], "int32", paired_valid_name)
self.validate_spectral_values(task_id, arrays)
return arrays
def validate_spectral_values(self, task_id: str, arrays: dict[str, np.ndarray]) -> None:
class_ids = arrays["class_id"]
if set(class_ids.tolist()) != set(range(NUM_CLASSES)):
raise ValueError("spectral class IDs do not cover 0..999")
for name, array in arrays.items():
if array.dtype.kind == "f" and np.any(np.isinf(array)):
raise ValueError(f"spectral array {name} contains Inf")
for name in ("signal_centered_rms", "signal_noncentered_rms"):
values = arrays[name]
if not complete_nonnegative_rms(values):
raise ValueError(f"{name} must be complete, finite, and nonnegative")
channels = np.asarray(
[EXPANDED_CHANNELS_BY_STAGE[stage - 1] for stage in arrays["block_stage"]],
dtype=np.int32,
)
signal_channels = np.stack(
[
channels,
channels,
channels,
channels,
np.asarray(
[RESIDUAL_CHANNELS_BY_STAGE[stage - 1] for stage in arrays["block_stage"]],
dtype=np.int32,
),
],
axis=1,
)
log_valid = arrays["signal_log10_centered_energy_valid_channels"]
log_values = arrays["signal_log10_centered_energy"]
if np.any(log_valid < 0) or np.any(log_valid > signal_channels[None, :, :]):
raise ValueError("raw log-energy valid-channel counts are impossible")
if np.any(~np.isfinite(log_values[log_valid > 0])) or np.any(
~np.isnan(log_values[log_valid == 0])
):
raise ValueError("raw log-energy NaN/count convention violated")
for basis in BASES:
valid = arrays[f"{basis}_psd_valid_channels"]
if np.any(valid < 0) or np.any(valid > signal_channels[None, :, :]):
raise ValueError(f"{basis} PSD valid-channel counts are impossible")
for metric in ("high_fraction", "centroid", "entropy"):
values = arrays[f"{basis}_psd_{metric}"]
if np.any(~np.isfinite(values[valid > 0])) or np.any(~np.isnan(values[valid == 0])):
raise ValueError(f"{basis} PSD {metric} NaN/count convention violated")
if np.any(values[valid > 0] < -1e-12) or np.any(values[valid > 0] > 1.0 + 1e-12):
raise ValueError(f"{basis} PSD {metric} outside normalized bounds")
carrier_valid = valid[:, :, SIGNAL_NAMES.index("carrier")]
output_valid = valid[:, :, SIGNAL_NAMES.index("gated_product")]
paired_valid = arrays[f"{basis}_output_minus_carrier_valid_channels"]
if np.any(paired_valid < 0) or np.any(paired_valid > carrier_valid) or np.any(
paired_valid > output_valid
):
raise ValueError(f"{basis} paired output-minus-carrier counts are impossible")
for name in (
f"{basis}_output_minus_carrier_high_fraction",
f"{basis}_output_minus_carrier_centroid",
):
values = arrays[name]
if np.any(~np.isfinite(values[paired_valid > 0])) or np.any(
~np.isnan(values[paired_valid == 0])
):
raise ValueError(f"{name} paired-valid NaN/count convention violated")
jsd_valid = arrays[f"{basis}_jsd_valid_channels"]
if np.any(jsd_valid < 0) or np.any(jsd_valid > carrier_valid) or np.any(
jsd_valid > output_valid
):
raise ValueError(f"{basis} JSD valid-channel counts are impossible")
jsd = arrays[f"{basis}_jsd_xy"]
if np.any(~np.isfinite(jsd[jsd_valid > 0])) or np.any(
~np.isnan(jsd[jsd_valid == 0])
):
raise ValueError(f"{basis} JSD NaN/count convention violated")
invalid_fraction = 1.0 - carrier_valid.sum(axis=0, dtype=np.float64) / (
NUM_SPECTRAL_IMAGES * channels
)
if np.any(invalid_fraction >= 0.01):
raise ValueError(f"{basis} carrier invalid fraction is not below 1%")
source_valid = arrays[f"{basis}_transfer_source_valid"]
source_suppressed = arrays[f"{basis}_transfer_source_suppressed"]
if np.any(source_valid < 0) or np.any(source_valid > channels[None, :, None]):
raise ValueError(f"{basis} source-valid counts are impossible")
if np.any(source_suppressed < 0) or np.any(source_suppressed > source_valid):
raise ValueError(f"{basis} source-suppressed counts are impossible")
source_invalid_fraction = 1.0 - source_valid.sum(axis=0, dtype=np.float64) / (
NUM_SPECTRAL_IMAGES * channels[:, None]
)
if np.any(source_invalid_fraction >= 0.01):
raise ValueError(f"{basis} source invalid fraction is not below 1%")
primary = arrays[f"{basis}_transfer_primary"]
conditional = arrays[f"{basis}_transfer_conditional"]
for image in range(NUM_SPECTRAL_IMAGES):
for block in range(NUM_BLOCKS):
for source in range(NUM_BANDS):
count = int(source_valid[image, block, source])
suppressed = int(source_suppressed[image, block, source])
p_row = primary[image, block, source]
c_row = conditional[image, block, source]
if count == 0:
if not np.all(np.isnan(p_row)) or not np.all(np.isnan(c_row)):
raise ValueError(f"{basis} undefined transfer row is not NaN")
continue
if not np.all(np.isfinite(p_row)) or np.any(p_row < -1e-12) or np.any(p_row > 1 + 1e-12):
raise ValueError(f"{basis} primary transfer row is invalid")
expected_primary_sum = (count - suppressed) / count
if not math.isclose(float(p_row.sum()), expected_primary_sum, abs_tol=1e-9):
raise ValueError(f"{basis} primary transfer row normalization failed")
if count == suppressed:
if not np.all(np.isnan(c_row)):
raise ValueError(f"{basis} suppressed conditional row is not NaN")
elif not np.all(np.isfinite(c_row)) or not math.isclose(float(c_row.sum()), 1.0, abs_tol=1e-9):
raise ValueError(f"{basis} conditional transfer row normalization failed")
for name in ("gate_mean", "gate_cv", "gate_zero_fraction", "gate_active_fraction", "gate_clip_crossing_fraction"):
if not np.all(np.isfinite(arrays[name])):
raise ValueError(f"{name} contains undefined values")
for name in (
"gate_zero_fraction",
"gate_active_fraction",
"gate_clip_crossing_fraction",
"constant_gate_fraction",
):
if np.any(arrays[name] < -1e-12) or np.any(arrays[name] > 1 + 1e-12):
raise ValueError(f"{name} is outside [0,1]")
if np.any(arrays["gate_cv"] < 0):
raise ValueError("gate_cv is negative")
if np.any(arrays["gate_mean"] < 0):
raise ValueError("gate_mean is negative")
coherence_valid = arrays["coherence_valid_channels"]
coherence = arrays["coherence_mean"]
if np.any(coherence_valid < 0) or np.any(coherence_valid > channels[None, :, None]):
raise ValueError("coherence valid counts are impossible")
if np.any(~np.isfinite(coherence[coherence_valid > 0])) or np.any(~np.isnan(coherence[coherence_valid == 0])):
raise ValueError("coherence NaN/count convention violated")
if np.any(np.abs(coherence[coherence_valid > 0]) > 1 + 1e-10):
raise ValueError("coherence is outside [-1,1]")
arm, _ = EXPECTED_TASK[task_id]
if arm in {"B", "S"}:
for block in range(NUM_BLOCKS):
rho = class_equal_mean(coherence[:, block, 0], class_ids)
if abs(rho - 1.0) > 1e-7:
raise ValueError(f"{arm} rho_used differs from one at block {block}")
projection_valid = arrays["fft_psd_valid_channels"][
:, :, SIGNAL_NAMES.index("carrier")
]
for name in ("projection_residual", "projection_suppressed_fraction"):
values = arrays[name]
if (
np.any(~np.isfinite(values[projection_valid > 0]))
or np.any(~np.isnan(values[projection_valid == 0]))
or np.any(values[projection_valid > 0] < -1e-12)
or np.any(values[projection_valid > 0] > 1 + 1e-12)
):
raise ValueError(f"{name} NaN/count/bound convention is invalid")
conditional_valid = arrays["projection_residual_conditional_valid_channels"]
conditional = arrays["projection_residual_conditional"]
if np.any(conditional_valid < 0) or np.any(conditional_valid > projection_valid):
raise ValueError("conditional M_res valid-channel counts are impossible")
if (
np.any(~np.isfinite(conditional[conditional_valid > 0]))
or np.any(~np.isnan(conditional[conditional_valid == 0]))
or np.any(conditional[conditional_valid > 0] < -1e-12)
or np.any(conditional[conditional_valid > 0] > 1 + 1e-12)
):
raise ValueError("conditional M_res NaN/count/bound convention is invalid")
constant_count = arrays["constant_gate_count"]
if np.any(constant_count < 0) or np.any(constant_count > channels[None, :]):
raise ValueError("constant-gate counts are impossible")
expected_constant_fraction = constant_count.astype(np.float64) / channels[None, :]
if not np.allclose(
arrays["constant_gate_fraction"],
expected_constant_fraction,
rtol=0.0,
atol=1e-12,
):
raise ValueError("constant-gate fractions differ from counts/channel totals")
def summarize_task_spectral(
self, task_id: str, arrays: dict[str, np.ndarray]
) -> dict[tuple[str, int, str], dict[str, Any]]:
arm, order = EXPECTED_TASK[task_id]
class_ids = arrays["class_id"]
distance = np.abs(
np.asarray([0.125, 0.375, 0.625, 0.875])[:, None]
- np.asarray([0.125, 0.375, 0.625, 0.875])[None, :]
)
result: dict[tuple[str, int, str], dict[str, Any]] = {}
for basis in BASES:
primary = arrays[f"{basis}_transfer_primary"]
source_valid = arrays[f"{basis}_transfer_source_valid"]
source_suppressed = arrays[f"{basis}_transfer_source_suppressed"]
for block_index in range(NUM_BLOCKS):
primary_mean = class_equal_array(primary[:, block_index], class_ids)
offdiag = primary_mean.copy()
np.fill_diagonal(offdiag, 0.0)
source_valid_per_image = source_valid[:, block_index].sum(
axis=1, dtype=np.float64
)
source_suppressed_per_image = source_suppressed[:, block_index].sum(
axis=1, dtype=np.float64
)
channel_count = EXPANDED_CHANNELS_BY_STAGE[
int(arrays["block_stage"][block_index]) - 1
]
source_valid_fraction_per_image = source_valid_per_image / (
NUM_BANDS * channel_count
)
with np.errstate(divide="ignore", invalid="ignore"):
source_suppressed_fraction_per_image = np.where(
source_valid_per_image > 0,
source_suppressed_per_image / source_valid_per_image,
np.nan,
)
operator = {
"rho_used": optional_class_equal_mean(
arrays["coherence_mean"][:, block_index, 0], class_ids
),
"rho_response": optional_class_equal_mean(
arrays["coherence_mean"][:, block_index, 1], class_ids
),
"jsd": optional_image_equal_mean(
arrays[f"{basis}_jsd_xy"][:, block_index]
),
"jsd_valid_channels": int(
arrays[f"{basis}_jsd_valid_channels"][:, block_index].sum(
dtype=np.int64
)
),
"m_res": image_equal_mean(arrays["projection_residual"][:, block_index]),
"m_res_conditional": optional_image_equal_mean(
arrays["projection_residual_conditional"][:, block_index]
),
"m_res_conditional_valid_channels": int(
arrays["projection_residual_conditional_valid_channels"][
:, block_index
].sum(dtype=np.int64)
),
"suppressed_fraction": image_equal_mean(
arrays["projection_suppressed_fraction"][:, block_index]
),
"m_off": float(offdiag.sum(dtype=np.float64) / NUM_BANDS),
"m_disp": float((primary_mean * distance).sum(dtype=np.float64) / NUM_BANDS),
"source_valid": int(source_valid[:, block_index].sum(dtype=np.int64)),
"source_suppressed": int(
source_suppressed[:, block_index].sum(dtype=np.int64)
),
"transfer_primary": primary_mean,
"transfer_conditional": optional_class_equal_array(
arrays[f"{basis}_transfer_conditional"][:, block_index], class_ids
),
"transfer_source_valid": source_valid[:, block_index].sum(
axis=0, dtype=np.int64
),
"transfer_source_suppressed": source_suppressed[:, block_index].sum(
axis=0, dtype=np.int64
),
"source_valid_fraction": class_equal_mean(
source_valid_fraction_per_image, class_ids
),
"source_suppressed_fraction": class_equal_mean(
source_suppressed_fraction_per_image, class_ids
),
"output_minus_carrier_high_fraction": optional_image_equal_mean(
arrays[f"{basis}_output_minus_carrier_high_fraction"][:, block_index]
),
"output_minus_carrier_centroid": optional_image_equal_mean(
arrays[f"{basis}_output_minus_carrier_centroid"][:, block_index]
),
"output_minus_carrier_valid_channels": int(
arrays[f"{basis}_output_minus_carrier_valid_channels"][
:, block_index
].sum(dtype=np.int64)
),
}
for signal_index, signal in enumerate(SIGNAL_NAMES):
valid = arrays[f"{basis}_psd_valid_channels"][:, block_index, signal_index]
log_valid = arrays["signal_log10_centered_energy_valid_channels"][
:, block_index, signal_index
]
signal_channel_count = (
RESIDUAL_CHANNELS_BY_STAGE[
int(arrays["block_stage"][block_index]) - 1
]
if signal == "residual_delta"
else EXPANDED_CHANNELS_BY_STAGE[
int(arrays["block_stage"][block_index]) - 1
]
)
summary: dict[str, Any] = {
"task_id": task_id,
"arm": arm,
"order": order,
"basis": basis,
"global_block_index": block_index,
"stage": int(arrays["block_stage"][block_index]),
"block": int(arrays["block_within_stage"][block_index]),
"signal": signal,
"psd_high_fraction": optional_image_equal_mean(
arrays[f"{basis}_psd_high_fraction"][:, block_index, signal_index]
),
"psd_centroid": optional_image_equal_mean(
arrays[f"{basis}_psd_centroid"][:, block_index, signal_index]
),
"psd_entropy": optional_image_equal_mean(
arrays[f"{basis}_psd_entropy"][:, block_index, signal_index]
),
"valid": int(valid.sum(dtype=np.int64)),
"invalid": int(
NUM_SPECTRAL_IMAGES
* signal_channel_count
- valid.sum(dtype=np.int64)
),
"centered_rms": optional_image_equal_mean(
arrays["signal_centered_rms"][:, block_index, signal_index]
),
"log10_centered_energy": optional_image_equal_mean(
arrays["signal_log10_centered_energy"][:, block_index, signal_index]
),
"log10_centered_energy_valid": int(
log_valid.sum(dtype=np.int64)
),
"log10_centered_energy_invalid": int(
NUM_SPECTRAL_IMAGES * signal_channel_count
- log_valid.sum(dtype=np.int64)
),
"noncentered_rms": optional_image_equal_mean(
arrays["signal_noncentered_rms"][:, block_index, signal_index]
),
"gate_mean": None,
"gate_cv": None,
"gate_zero_fraction": None,
"gate_active_fraction": None,
"gate_clip_crossing_fraction": None,
"rho_used": None,
"rho_response": None,
"jsd": None,
"jsd_valid_channels": None,
"m_res": None,
"m_res_conditional": None,
"m_res_conditional_valid_channels": None,
"suppressed_fraction": None,
"constant_gate_fraction": None,
"constant_gate_count": None,
"m_off": None,
"m_disp": None,
"output_minus_carrier_high_fraction": None,
"output_minus_carrier_centroid": None,
"output_minus_carrier_valid_channels": None,
"source_valid": None,
"source_suppressed": None,
"source_valid_fraction": None,
"source_suppressed_fraction": None,
}
if signal == "gate_value":
for name in (
"gate_mean",
"gate_cv",
"gate_zero_fraction",
"gate_active_fraction",
"gate_clip_crossing_fraction",
):
summary[name] = image_equal_mean(arrays[name][:, block_index])
summary["constant_gate_fraction"] = image_equal_mean(
arrays["constant_gate_fraction"][:, block_index]
)
summary["constant_gate_count"] = int(
arrays["constant_gate_count"][:, block_index].sum(dtype=np.int64)
)
if signal == "gated_product":
summary.update(operator)
result[(basis, block_index, signal)] = summary
expected_keys = {
(basis, block, signal)
for basis in BASES
for block in range(NUM_BLOCKS)
for signal in SIGNAL_NAMES
}
if set(result) != expected_keys:
raise AssertionError("internal spectral block summary coverage error")
return result
def validate_spectral_csv(
self,
task_id: str,
root: Path,
summary: dict[tuple[str, int, str], dict[str, Any]],
) -> list[dict[str, Any]]:
observed = read_csv(root / "spectral_by_block.csv", SPECTRAL_COLUMNS)
expected = [summary[key] for key in sorted(summary)]
if len(observed) != NUM_BLOCKS * len(BASES) * len(SIGNAL_NAMES):
raise ValueError("spectral_by_block.csv must contain 170 rows per task")
by_key: dict[tuple[str, int, str], dict[str, str]] = {}
for row in observed:
key = (row["basis"], int(row["global_block_index"]), row["signal"])
if key in by_key:
raise ValueError(f"duplicate spectral CSV key: {key}")
by_key[key] = row
if set(by_key) != set(summary):
raise ValueError("spectral CSV block/basis/signal coverage mismatch")
string_fields = ("task_id", "arm", "order", "basis", "signal")
integer_fields = ("global_block_index", "stage", "block", "valid", "invalid")
numeric_fields = (
"psd_high_fraction",
"psd_centroid",
"psd_entropy",
"centered_rms",
"log10_centered_energy",
"log10_centered_energy_valid",
"log10_centered_energy_invalid",
"noncentered_rms",
"gate_mean",
"gate_cv",
"gate_zero_fraction",
"gate_active_fraction",
"gate_clip_crossing_fraction",
"rho_used",
"rho_response",
"jsd",
"jsd_valid_channels",
"m_res",
"m_res_conditional",
"m_res_conditional_valid_channels",
"suppressed_fraction",
"constant_gate_fraction",
"constant_gate_count",
"m_off",
"m_disp",
"output_minus_carrier_high_fraction",
"output_minus_carrier_centroid",
"output_minus_carrier_valid_channels",
"source_valid",
"source_suppressed",
"source_valid_fraction",
"source_suppressed_fraction",
)
for key, target in summary.items():
actual = by_key[key]
for field in string_fields:
if actual[field] != str(target[field]):
raise ValueError(f"spectral CSV {key} differs in {field}")
for field in integer_fields:
if int(actual[field]) != int(target[field]):
raise ValueError(f"spectral CSV {key} differs in {field}")
for field in numeric_fields:
expected_value = target[field]
if expected_value is None:
if actual[field] != "":
raise ValueError(f"spectral CSV {key} must leave {field} empty")
elif not math.isclose(
float(actual[field]), float(expected_value), rel_tol=1e-10, abs_tol=1e-10
):
raise ValueError(f"spectral CSV {key} differs in {field}")
return expected
def validate_task_transfer_npz(
self,
root: Path,
summary: dict[tuple[str, int, str], dict[str, Any]],
) -> None:
required = ["block_global_index", "block_stage", "block_within_stage"]
for basis in BASES:
required.extend(
[
f"{basis}_primary",
f"{basis}_conditional",
f"{basis}_source_valid",
f"{basis}_source_suppressed",
]
)
arrays = load_npz(root / "transfer_matrices.npz", required)
metadata_expected = {
"block_global_index": np.arange(NUM_BLOCKS, dtype=np.int8),
"block_stage": np.asarray(EXPECTED_STAGES, dtype=np.int8),
"block_within_stage": np.asarray(EXPECTED_STAGE_BLOCKS, dtype=np.int8),
}
for name, expected in metadata_expected.items():
if not np.array_equal(arrays[name], expected):
raise ValueError(f"transfer_matrices.npz metadata differs in {name}")
for basis in BASES:
expected_primary = np.stack(
[summary[(basis, block, "gated_product")]["transfer_primary"] for block in range(NUM_BLOCKS)]
)
expected_conditional = np.stack(
[summary[(basis, block, "gated_product")]["transfer_conditional"] for block in range(NUM_BLOCKS)]
)
expected_valid = np.stack(
[summary[(basis, block, "gated_product")]["transfer_source_valid"] for block in range(NUM_BLOCKS)]
)
expected_suppressed = np.stack(
[summary[(basis, block, "gated_product")]["transfer_source_suppressed"] for block in range(NUM_BLOCKS)]
)
require_shape(arrays[f"{basis}_primary"], (NUM_BLOCKS, 4, 4), f"{basis}_primary")
require_dtype(arrays[f"{basis}_primary"], "float64", f"{basis}_primary")
require_shape(arrays[f"{basis}_conditional"], (NUM_BLOCKS, 4, 4), f"{basis}_conditional")
require_dtype(arrays[f"{basis}_conditional"], "float64", f"{basis}_conditional")
require_shape(arrays[f"{basis}_source_valid"], (NUM_BLOCKS, 4), f"{basis}_source_valid")
require_dtype(arrays[f"{basis}_source_valid"], "int64", f"{basis}_source_valid")
require_shape(arrays[f"{basis}_source_suppressed"], (NUM_BLOCKS, 4), f"{basis}_source_suppressed")
require_dtype(arrays[f"{basis}_source_suppressed"], "int64", f"{basis}_source_suppressed")
if not np.allclose(arrays[f"{basis}_primary"], expected_primary, rtol=0, atol=1e-12):
raise ValueError(f"{basis} primary transfer aggregate differs from per-image evidence")
if not np.allclose(
arrays[f"{basis}_conditional"],
expected_conditional,
rtol=0,
atol=1e-12,
equal_nan=True,
):
raise ValueError(f"{basis} conditional transfer aggregate differs from per-image evidence")
if not np.array_equal(arrays[f"{basis}_source_valid"], expected_valid):
raise ValueError(f"{basis} source-valid aggregate mismatch")
if not np.array_equal(arrays[f"{basis}_source_suppressed"], expected_suppressed):
raise ValueError(f"{basis} source-suppressed aggregate mismatch")
def task_stage_rows(
self,
task_id: str,
summary: dict[tuple[str, int, str], dict[str, Any]],
) -> list[dict[str, Any]]:
arm, order = EXPECTED_TASK[task_id]
rows: list[dict[str, Any]] = []
simple_metrics = (
"psd_high_fraction",
"psd_centroid",
"psd_entropy",
"centered_rms",
"noncentered_rms",
)
operator_metrics = (
"rho_used",
"rho_response",
"jsd",
"m_res",
"suppressed_fraction",
"m_off",
"m_disp",
)
for basis in BASES:
for stage in range(1, 5):
block_indices = [
index for index, value in enumerate(EXPECTED_STAGES) if value == stage
]
for signal in SIGNAL_NAMES:
selected = [summary[(basis, index, signal)] for index in block_indices]
row: dict[str, Any] = {
"task_id": task_id,
"arm": arm,
"order": order,
"basis": basis,
"stage": stage,
"signal": signal,
"aggregation": "block_equal",
"block_count": len(selected),
}
for metric in simple_metrics:
values = np.asarray(
[
float(item[metric])
if item[metric] is not None
else np.nan
for item in selected
],
dtype=np.float64,
)
row[metric] = optional_image_equal_mean(values)
for metric in operator_metrics:
if signal == "gated_product":
values = np.asarray(
[
float(item[metric])
if item[metric] is not None
else np.nan
for item in selected
],
dtype=np.float64,
)
row[metric] = optional_image_equal_mean(values)
else:
row[metric] = None
rows.append(row)
return rows
def validate_stage_csv(
self,
task_id: str,
root: Path,
summary: dict[tuple[str, int, str], dict[str, Any]],
) -> None:
observed = read_csv(root / "spectral_by_stage.csv", STAGE_COLUMNS)
expected = self.task_stage_rows(task_id, summary)
if len(observed) != len(BASES) * 4 * len(SIGNAL_NAMES):
raise ValueError("spectral_by_stage.csv must contain 40 block-equal rows")
key_fields = ("basis", "stage", "signal", "aggregation")
by_key: dict[tuple[str, int, str, str], dict[str, str]] = {}
for row in observed:
key = (row["basis"], int(row["stage"]), row["signal"], row["aggregation"])
if key in by_key:
raise ValueError(f"duplicate stage CSV key: {key}")
by_key[key] = row
for target in expected:
key = tuple(target[field] for field in key_fields)
actual = by_key.get(key) # type: ignore[arg-type]
if actual is None:
raise ValueError(f"stage CSV is missing {key}")
for field in ("task_id", "arm", "order", "basis", "signal", "aggregation"):
if actual[field] != str(target[field]):
raise ValueError(f"stage CSV {key} differs in {field}")
for field in ("stage", "block_count"):
if int(actual[field]) != int(target[field]):
raise ValueError(f"stage CSV {key} differs in {field}")
for field in STAGE_COLUMNS[8:]:
expected_value = target[field]
if expected_value is None:
if actual[field] != "":
raise ValueError(f"stage CSV {key} must leave {field} empty")
elif not math.isclose(
float(actual[field]), float(expected_value), rel_tol=1e-10, abs_tol=1e-10
):
raise ValueError(f"stage CSV {key} differs in {field}")
def validate_pairing(
self,
task_id: str,
root: Path,
accuracy: dict[str, np.ndarray],
results: dict[str, Any],
) -> dict[str, Any]:
pairing = load_json(root / "batch_pairing_manifest.json")
arm, order = EXPECTED_TASK[task_id]
required = {
"schema_version",
"protocol_id",
"task_id",
"arm",
"order",
"applies",
"batch_size",
"tail_batch_size",
"num_batches",
"blocks",
}
missing = sorted(required - set(pairing))
if missing:
raise ValueError(f"batch pairing manifest missing fields: {missing}")
if not (
pairing["schema_version"] == 1
and pairing["protocol_id"] == PROTOCOL_ID
and pairing["task_id"] == task_id
and pairing["arm"] == arm
and pairing["order"] == order
and pairing["batch_size"] == 256
and pairing["tail_batch_size"] == 80
and pairing["num_batches"] == 196
):
raise ValueError("batch pairing root contract mismatch")
if arm != "D":
if pairing["applies"] is not False or pairing["blocks"] != []:
raise ValueError("non-D task must emit applies=false and no pairing blocks")
return pairing
if pairing["applies"] is not True or len(pairing["blocks"]) != NUM_BLOCKS:
raise ValueError("D task must emit exactly 17 pairing blocks")
order_hash = int64_sha256(accuracy["canonical_index"])
for global_index, row in enumerate(pairing["blocks"]):
required_block = {
"block_global_index",
"stage",
"block",
"receiver_count",
"donor_count",
"batch_count",
"bijection",
"fixed_points",
"mapping_sha256",
"receiver_index_sha256",
"donor_index_sha256",
"batch_sizes_sha256",
"by_local_batch_size",
}
if not required_block.issubset(row):
raise ValueError(f"D pairing block {global_index} is missing fields")
if not (
row["block_global_index"] == global_index
and row["stage"] == EXPECTED_STAGES[global_index]
and row["block"] == EXPECTED_STAGE_BLOCKS[global_index]
and row["receiver_count"] == NUM_IMAGES
and row["donor_count"] == NUM_IMAGES
and row["batch_count"] == 196
and row["bijection"] is True
and row["fixed_points"] == 0
and row["receiver_index_sha256"] == order_hash
):
raise ValueError(f"D pairing block {global_index} mapping contract failed")
for hash_field in (
"mapping_sha256",
"receiver_index_sha256",
"donor_index_sha256",
"batch_sizes_sha256",
):
if not valid_sha256(row[hash_field]):
raise ValueError(f"D pairing block {global_index} malformed {hash_field}")
by_size = {entry["local_batch_size"]: entry for entry in row["by_local_batch_size"]}
if set(by_size) != {80, 256}:
raise ValueError(f"D pairing block {global_index} batch-size coverage failed")
expected_counts = {80: (1, 80), 256: (195, 49_920)}
for size, (batches, receivers) in expected_counts.items():
entry = by_size[size]
required_size = {
"local_batch_size",
"shift",
"source_position_sha256",
"is_bijection",
"fixed_points",
"batches",
"receiver_count",
}
if not required_size.issubset(entry):
raise ValueError("D by_local_batch_size entry is missing fields")
if not (
0 < int(entry["shift"]) < size
and valid_sha256(entry["source_position_sha256"])
and entry["is_bijection"] is True
and entry["fixed_points"] == 0
and entry["batches"] == batches
and entry["receiver_count"] == receivers
):
raise ValueError(f"D local batch-size {size} proof failed")
batch_summary = results["batch_pairing"]
if not isinstance(batch_summary, dict) or batch_summary.get("passed") is not True:
raise ValueError("results.batch_pairing does not assert passed")
if batch_summary.get("covered_receivers") != NUM_IMAGES:
raise ValueError("results.batch_pairing receiver coverage mismatch")
return pairing
def validate_cross_task_contract(self) -> None:
if set(self.tasks) != set(TASK_ORDER):
self.check(
"cross.all_eight_tasks",
False,
"cross-task validation requires all eight valid tasks",
valid_tasks=sorted(self.tasks),
)
return
subset_hashes = {
task.results["hashes"]["subset_manifest_sha256"] for task in self.tasks.values()
}
self.check(
"cross.common_subset",
subset_hashes == {self.manifest["spectral_subset"]["sha256"]},
"all eight tasks must use the one frozen 4,096-image subset",
hashes=sorted(subset_hashes),
)
runner_hashes = {task.results["hashes"]["runner_sha256"] for task in self.tasks.values()}
self.check(
"cross.common_runner",
runner_hashes == {file_sha256(self.runner_path)},
"all eight tasks must use the same frozen runner",
hashes=sorted(runner_hashes),
)
data_hashes = {task.results["hashes"]["data_manifest_sha256"] for task in self.tasks.values()}
self.check(
"cross.common_data",
data_hashes == {self.manifest["dataset"]["evaluation_manifest_sha256"]},
"all eight tasks must bind the canonical ImageNet validation evaluation manifest",
hashes=sorted(data_hashes),
)
task_packages = {
stable_json(load_json(task.root / "environment.json")["packages"])
for task in self.tasks.values()
}
task_package_locks = {
load_json(task.root / "environment.json")["package_lock"]["sha256"]
for task in self.tasks.values()
}
self.check(
"cross.common_package_versions",
len(task_packages) == 1 and len(task_package_locks) == 1,
"task-level package versions or full package locks differ across processes",
package_lock_sha256=sorted(task_package_locks),
)
reference_indices = self.tasks["B"].spectral["canonical_index"]
reference_classes = self.tasks["B"].spectral["class_id"]
self.check(
"cross.spectral_receiver_alignment",
all(
np.array_equal(task.spectral["canonical_index"], reference_indices)
and np.array_equal(task.spectral["class_id"], reference_classes)
for task in self.tasks.values()
),
"per-image spectral arrays are not receiver-aligned across tasks",
)
c_perm = self.tasks["C"].results["task_contract"]["intervention"][
"channel_permutation_manifest_sha256"
]
sc_perm = self.tasks["SC"].results["task_contract"]["intervention"][
"channel_permutation_manifest_sha256"
]
self.check(
"cross.channel_permutation",
c_perm == sc_perm == FROZEN_CHANNEL_PERMUTATION_SHA256,
"C and SC must share the exact frozen 17-block permutation manifest",
)
d_order_hashes = {
self.tasks[task_id].results["hashes"]["order_indices_sha256"]
for task_id in ("D", "D_order1", "D_order2")
}
self.check(
"cross.d_registered_orders",
len(d_order_hashes) == 3,
"D canonical/salt1/salt2 order hashes must be distinct",
hashes=sorted(d_order_hashes),
)
self.validate_b_order_invariance()
def validate_b_order_invariance(self) -> None:
baseline = self.tasks["B"]
control = self.tasks["B_order1"]
accuracy_equal = (
int(baseline.accuracy["top1_correct"][0].sum())
== int(control.accuracy["top1_correct"][0].sum())
and int(baseline.accuracy["top5_correct"][0].sum())
== int(control.accuracy["top5_correct"][0].sum())
)
comparison = compare_block_summary_registries(
baseline.block_summary, control.block_summary
)
row_level_equal = True
row_level_maximum = 0.0
row_level_coverage: list[str] = []
baseline_order = np.argsort(baseline.accuracy["canonical_index"], kind="stable")
control_order = np.argsort(control.accuracy["canonical_index"], kind="stable")
for field in (
"target",
"top1_correct",
"top5_correct",
"nll",
"prediction",
"confidence",
):
left = baseline.accuracy[field]
right = control.accuracy[field]
left = left[baseline_order] if left.ndim == 1 else left[0, baseline_order]
right = right[control_order] if right.ndim == 1 else right[0, control_order]
equal, difference, _ = compare_aggregate_values(left, right)
row_level_equal = row_level_equal and equal and difference <= 1e-6
row_level_maximum = max(row_level_maximum, difference)
row_level_coverage.append(f"accuracy.{field}")
spectral_registry_equal = set(baseline.spectral) == set(control.spectral)
for field in sorted(set(baseline.spectral) & set(control.spectral)):
equal, difference, _ = compare_aggregate_values(
baseline.spectral[field], control.spectral[field]
)
row_level_equal = row_level_equal and equal and difference <= 1e-6
row_level_maximum = max(row_level_maximum, difference)
row_level_coverage.append(f"spectral.{field}")
baseline_accuracy_row = next(
row for row in baseline.accuracy_rows if row["condition"] == "unfiltered"
)
control_accuracy_row = next(
row for row in control.accuracy_rows if row["condition"] == "unfiltered"
)
aggregate_accuracy_equal = True
for field in ("top1_correct", "top5_correct", "top1", "top5", "nll", "ece"):
equal, difference, _ = compare_aggregate_values(
baseline_accuracy_row[field], control_accuracy_row[field]
)
aggregate_accuracy_equal = (
aggregate_accuracy_equal and equal and difference <= 1e-6
)
row_level_maximum = max(row_level_maximum, difference)
expected_registry = True
identity_contract = True
for task_id, task in (("B", baseline), ("B_order1", control)):
expected_arm, expected_order = EXPECTED_TASK[task_id]
for (basis, block, signal), row in task.block_summary.items():
expected_fields = set(SPECTRAL_COLUMNS)
if signal == "gated_product":
expected_fields |= BLOCK_SUMMARY_GATED_EXTRA_FIELDS
expected_registry = expected_registry and set(row) == expected_fields
identity_contract = identity_contract and (
row["task_id"] == task_id
and row["arm"] == expected_arm
and row["order"] == expected_order
and row["basis"] == basis
and row["global_block_index"] == block
and row["stage"] == EXPECTED_STAGES[block]
and row["block"] == EXPECTED_STAGE_BLOCKS[block]
and row["signal"] == signal
)
required_fields = {
"m_res_conditional",
"output_minus_carrier_high_fraction",
"output_minus_carrier_centroid",
"source_valid_fraction",
"source_suppressed_fraction",
"constant_gate_fraction",
"transfer_primary",
"transfer_conditional",
"transfer_source_valid",
"transfer_source_suppressed",
}
required_coverage = required_fields <= comparison["covered_fields"]
self.check(
"cross.b_order_invariance",
accuracy_equal
and aggregate_accuracy_equal
and spectral_registry_equal
and row_level_equal
and comparison["field_registry_identical"]
and expected_registry
and identity_contract
and required_coverage
and comparison["definedness_equal"]
and comparison["maximum_absolute_metric_difference"] <= 1e-6,
"B salt1 must preserve every aggregate field, definedness mask, count, and transfer cell within 1e-6",
integer_counts_identical=accuracy_equal,
aggregate_unfiltered_accuracy_identical=aggregate_accuracy_equal,
row_level_evidence_identical=row_level_equal,
row_level_array_coverage=sorted(row_level_coverage),
row_level_artifact_sha256={
task_id: {
"per_image_accuracy.npz": file_sha256(
task.root / "per_image_accuracy.npz"
),
"per_image_spectral.npz": file_sha256(
task.root / "per_image_spectral.npz"
),
}
for task_id, task in (("B", baseline), ("B_order1", control))
},
row_level_maximum_absolute_difference=row_level_maximum,
spectral_array_registry_identical=spectral_registry_equal,
field_registry_identical=comparison["field_registry_identical"],
expected_aggregate_registry_complete=expected_registry,
identity_contract_valid=identity_contract,
required_field_coverage=required_coverage,
compared_values=comparison["compared_values"],
maximum_absolute_metric_difference=comparison[
"maximum_absolute_metric_difference"
],
)
@staticmethod
def task_global_metrics(task: TaskData) -> dict[str, float | None]:
output: dict[str, float | None] = {}
for basis in BASES:
rows = [
task.block_summary[(basis, block, "gated_product")]
for block in range(NUM_BLOCKS)
]
for metric in (
"m_off",
"m_res",
"m_res_conditional",
"suppressed_fraction",
"constant_gate_fraction",
"source_valid_fraction",
"source_suppressed_fraction",
"jsd",
"rho_used",
"rho_response",
"psd_high_fraction",
"psd_centroid",
"output_minus_carrier_high_fraction",
"output_minus_carrier_centroid",
"centered_rms",
):
metric_rows = (
[
task.block_summary[(basis, block, "gate_value")]
for block in range(NUM_BLOCKS)
]
if metric == "constant_gate_fraction"
else rows
)
values = np.asarray(
[
float(row[metric]) if row[metric] is not None else np.nan
for row in metric_rows
],
dtype=np.float64,
)
output[f"{basis}_{metric}"] = optional_image_equal_mean(values)
output["top1"] = float(task.accuracy["top1_correct"][0].mean(dtype=np.float64) * 100.0)
output["top5"] = float(task.accuracy["top5_correct"][0].mean(dtype=np.float64) * 100.0)
return output
@staticmethod
def task_global_image_metrics(task: TaskData) -> dict[str, np.ndarray]:
"""Return receiver-first inputs without imputing invalid source rows.
M_off keeps its source-band axis so the registered class-equal estimator
can exclude a missing source row before applying equal source weights.
Other metrics keep their block axis so their valid receiver masks remain
available to the image-equal estimator.
"""
arrays = task.spectral
result: dict[str, np.ndarray] = {}
for basis in BASES:
primary = arrays[f"{basis}_transfer_primary"].copy()
diagonal = np.arange(NUM_BANDS)
primary[:, :, diagonal, diagonal] = 0.0
source_valid = arrays[f"{basis}_transfer_source_valid"] > 0
row_off = np.sum(
np.where(np.isfinite(primary), primary, 0.0), axis=-1, dtype=np.float64
)
row_off[~source_valid] = np.nan
result[f"{basis}_m_off"] = row_off
result[f"{basis}_m_res"] = arrays["projection_residual"].astype(
np.float64, copy=False
)
result[f"{basis}_m_res_conditional"] = arrays[
"projection_residual_conditional"
].astype(np.float64, copy=False)
result[f"{basis}_suppressed_fraction"] = arrays[
"projection_suppressed_fraction"
].astype(np.float64, copy=False)
result[f"{basis}_psd_high_fraction"] = arrays[
f"{basis}_psd_high_fraction"
][:, :, SIGNAL_NAMES.index("gated_product")].astype(np.float64, copy=False)
result[f"{basis}_output_minus_carrier_high_fraction"] = arrays[
f"{basis}_output_minus_carrier_high_fraction"
].astype(np.float64, copy=False)
return result
@staticmethod
def bootstrap_weights(class_ids: np.ndarray) -> np.ndarray:
class_ids = np.asarray(class_ids)
indices_by_class = [
np.flatnonzero(class_ids == class_id) for class_id in range(NUM_CLASSES)
]
histogram = Counter(len(indices) for indices in indices_by_class)
formal_balance = Counter({4: 904, 5: 96})
if (
NUM_SPECTRAL_IMAGES == 4096
and NUM_CLASSES == 1000
and histogram != formal_balance
) or any(len(indices) == 0 for indices in indices_by_class):
raise ValueError("bootstrap class balance differs from the frozen subset")
weights = np.zeros(
(BOOTSTRAP_REPLICATES, NUM_SPECTRAL_IMAGES), dtype=np.uint8
)
rng = np.random.default_rng(BOOTSTRAP_SEED)
for indices in indices_by_class:
draws = rng.integers(
0,
len(indices),
size=(BOOTSTRAP_REPLICATES, len(indices)),
endpoint=False,
)
for local_position, canonical_slot in enumerate(indices):
weights[:, canonical_slot] = np.count_nonzero(
draws == local_position, axis=1
).astype(np.uint8, copy=False)
if not np.all(weights.sum(axis=1, dtype=np.int64) == NUM_SPECTRAL_IMAGES):
raise AssertionError("bootstrap replicate size changed")
return weights
def accuracy_bootstrap(self) -> dict[str, Any]:
series: dict[tuple[str, str, str], np.ndarray] = {}
reference_target: np.ndarray | None = None
for task_id in TASK_ORDER:
task = self.tasks[task_id]
canonical_index = task.accuracy["canonical_index"]
order = np.argsort(canonical_index, kind="stable")
if not np.array_equal(canonical_index[order], np.arange(NUM_IMAGES, dtype=np.int64)):
raise ValueError(f"{task_id} accuracy receivers cannot be canonically aligned")
target = task.accuracy["target"][order]
if reference_target is None:
reference_target = target
elif not np.array_equal(target, reference_target):
raise ValueError("accuracy targets differ after canonical receiver alignment")
conditions = tuple(str(item) for item in task.accuracy["condition_names"].tolist())
for local_index, condition in enumerate(conditions):
series[(task_id, condition, "top1")] = task.accuracy["top1_correct"][
local_index, order
].astype(np.float64)
series[(task_id, condition, "top5")] = task.accuracy["top5_correct"][
local_index, order
].astype(np.float64)
series[(task_id, condition, "nll")] = task.accuracy["nll"][
local_index, order
].astype(np.float64)
assert reference_target is not None
class_indices = [
np.flatnonzero(reference_target == class_id) for class_id in range(NUM_CLASSES)
]
if any(indices.size != 50 for indices in class_indices):
raise ValueError("full ImageNet accuracy bootstrap requires exactly 50 images/class")
series_keys = tuple(sorted(series))
value_matrix = np.stack([series[key] for key in series_keys], axis=1)
if not np.all(np.isfinite(value_matrix)):
raise ValueError("accuracy bootstrap input contains non-finite observations")
bootstrap_values = np.zeros(
(BOOTSTRAP_REPLICATES, len(series_keys)), dtype=np.float64
)
rng = np.random.default_rng(BOOTSTRAP_SEED)
probability = np.full(50, 1.0 / 50.0, dtype=np.float64)
for indices in class_indices:
counts = rng.multinomial(
50, probability, size=BOOTSTRAP_REPLICATES
).astype(np.float64, copy=False)
bootstrap_values += counts @ value_matrix[indices]
bootstrap_values /= NUM_IMAGES
key_to_column = {key: index for index, key in enumerate(series_keys)}
specs: list[tuple[str, str, str, str]] = []
for task_id in CANONICAL_ARMS:
for condition in EXPECTED_CONDITIONS[1:]:
specs.append((task_id, condition, task_id, "unfiltered"))
for left_index in range(1, len(CANONICAL_ARMS)):
for right_index in range(left_index):
left_task = CANONICAL_ARMS[left_index]
right_task = CANONICAL_ARMS[right_index]
for condition in EXPECTED_CONDITIONS:
specs.append((left_task, condition, right_task, condition))
specs.extend(
[
("D_order1", "unfiltered", "D", "unfiltered"),
("D_order2", "unfiltered", "D", "unfiltered"),
("D_order1", "unfiltered", "B", "unfiltered"),
("D_order2", "unfiltered", "B", "unfiltered"),
("B_order1", "unfiltered", "B", "unfiltered"),
]
)
if len(specs) != len(set(specs)):
raise AssertionError("accuracy bootstrap contrast registry contains duplicates")
rows: list[dict[str, Any]] = []
for left_task, left_condition, right_task, right_condition in specs:
for metric in ("top1", "top5", "nll"):
left_key = (left_task, left_condition, metric)
right_key = (right_task, right_condition, metric)
multiplier = 100.0 if metric in {"top1", "top5"} else 1.0
differences = multiplier * (
bootstrap_values[:, key_to_column[left_key]]
- bootstrap_values[:, key_to_column[right_key]]
)
point = multiplier * float(
series[left_key].mean(dtype=np.float64)
- series[right_key].mean(dtype=np.float64)
)
rows.append(
{
"contrast_id": (
f"{left_task}:{left_condition}-"
f"{right_task}:{right_condition}"
),
"left_task_id": left_task,
"left_condition": left_condition,
"right_task_id": right_task,
"right_condition": right_condition,
"metric": metric,
"unit": "percentage_points" if multiplier == 100.0 else "nats_per_image",
"samples": NUM_IMAGES,
"point_difference": point,
"bootstrap_ci95_low": float(np.percentile(differences, 2.5)),
"bootstrap_ci95_high": float(np.percentile(differences, 97.5)),
"bootstrap_replicates": BOOTSTRAP_REPLICATES,
"bootstrap_seed": BOOTSTRAP_SEED,
}
)
series_summaries: list[dict[str, Any]] = []
for key in series_keys:
task_id, condition, metric = key
multiplier = 100.0 if metric in {"top1", "top5"} else 1.0
estimates = multiplier * bootstrap_values[:, key_to_column[key]]
series_summaries.append(
{
"task_id": task_id,
"condition": condition,
"metric": metric,
"unit": "percentage_points" if multiplier == 100.0 else "nats_per_image",
"point": multiplier * float(series[key].mean(dtype=np.float64)),
"bootstrap_ci95_low": float(np.percentile(estimates, 2.5)),
"bootstrap_ci95_high": float(np.percentile(estimates, 97.5)),
}
)
return {
"schema_version": 1,
"replicates": BOOTSTRAP_REPLICATES,
"seed": BOOTSTRAP_SEED,
"scheme": (
"one shared ImageNet receiver resample: 50 draws with replacement "
"within each of 1000 ground-truth classes"
),
"independent_unit": "validation image",
"series_summaries": series_summaries,
"rows": rows,
}
def paired_bootstrap(
self,
weights_all: np.ndarray | None = None,
transfer: dict[str, Any] | None = None,
) -> dict[str, Any]:
"""Compute the registered mixing contrasts from valid-aware block estimates.
`transfer_bootstrap` applies the class-equal estimator to each source row
with its source-valid mask and the image-equal estimator to M_res. Reusing
those paired draws here prevents a sparse, legitimate invalid receiver
from being either imputed as zero or promoted to a mechanical failure.
"""
class_ids = self.tasks["B"].spectral["class_id"]
if weights_all is None:
weights_all = self.bootstrap_weights(class_ids)
if weights_all.shape != (BOOTSTRAP_REPLICATES, NUM_SPECTRAL_IMAGES):
raise ValueError("bootstrap weight matrix has the wrong shape")
if transfer is None:
transfer = self.transfer_bootstrap(weights_all)
task_names = tuple(str(value) for value in transfer["task_names"].tolist())
scalar_names = tuple(str(value) for value in transfer["scalar_names"].tolist())
if task_names != CANONICAL_ARMS:
raise ValueError("paired bootstrap task registry differs from canonical arms")
scalar_bootstrap = np.asarray(transfer["_scalar_bootstrap"], dtype=np.float64)
expected_shape = (
BOOTSTRAP_REPLICATES,
len(CANONICAL_ARMS),
len(BASES),
NUM_BLOCKS,
len(scalar_names),
)
if scalar_bootstrap.shape != expected_shape:
raise ValueError("paired bootstrap scalar tensor has the wrong shape")
metric_names = tuple(
f"{basis}_{metric}"
for basis in BASES
for metric in ("m_off", "m_res")
)
bootstrap_values: dict[str, dict[str, np.ndarray]] = {
task_id: {} for task_id in CANONICAL_ARMS
}
for task_index, task_id in enumerate(CANONICAL_ARMS):
for basis_index, basis in enumerate(BASES):
for metric in ("m_off", "m_res"):
metric_index = scalar_names.index(metric)
# All 17 blocks are registered equal-depth units. Undefined
# block estimates propagate to an undefined replicate.
bootstrap_values[task_id][f"{basis}_{metric}"] = np.mean(
scalar_bootstrap[:, task_index, basis_index, :, metric_index],
axis=1,
dtype=np.float64,
)
points = {
task_id: self.task_global_metrics(self.tasks[task_id])
for task_id in CANONICAL_ARMS
}
contrasts: dict[str, Any] = {}
for task_id in CANONICAL_ARMS[1:]:
task_contrasts: dict[str, Any] = {}
for metric in metric_names:
baseline_point = finite_or_none(points["B"].get(metric))
task_point = finite_or_none(points[task_id].get(metric))
common = {
"baseline_point": baseline_point,
"task_point": task_point,
"bootstrap_replicates": BOOTSTRAP_REPLICATES,
}
if baseline_point is None or task_point is None:
task_contrasts[metric] = {
**common,
"relative_difference_defined": False,
"reason": "point estimator is undefined",
"bootstrap_defined_replicates": 0,
"relative_difference_point": None,
"relative_difference_ci90": None,
"relative_difference_ci95": None,
}
continue
if baseline_point < 1e-6:
task_contrasts[metric] = {
**common,
"relative_difference_defined": False,
"reason": "B denominator is below the registered 1e-6 floor",
"bootstrap_defined_replicates": 0,
"relative_difference_point": None,
"relative_difference_ci90": None,
"relative_difference_ci95": None,
}
continue
numerator = bootstrap_values[task_id][metric] - bootstrap_values["B"][metric]
denominator = bootstrap_values["B"][metric]
valid = (
np.isfinite(numerator)
& np.isfinite(denominator)
& (np.abs(denominator) >= 1e-12)
)
defined_count = int(valid.sum(dtype=np.int64))
if defined_count:
relative = numerator[valid] / denominator[valid]
ci90 = [
float(np.percentile(relative, 5.0)),
float(np.percentile(relative, 95.0)),
]
ci95 = [
float(np.percentile(relative, 2.5)),
float(np.percentile(relative, 97.5)),
]
else:
ci90 = None
ci95 = None
complete = defined_count == BOOTSTRAP_REPLICATES
task_contrasts[metric] = {
**common,
"relative_difference_defined": complete,
"reason": (
None
if complete
else "not all registered paired-bootstrap replicates are defined"
),
"bootstrap_defined_replicates": defined_count,
"relative_difference_point": (
(task_point - baseline_point) / baseline_point
if complete
else None
),
"relative_difference_ci90": ci90,
"relative_difference_ci95": ci95,
}
contrasts[task_id] = task_contrasts
return {
"replicates": BOOTSTRAP_REPLICATES,
"seed": BOOTSTRAP_SEED,
"scheme": (
"one shared class-stratified receiver resample; source-valid class-equal "
"M_off and receiver-valid image-equal M_res, block-equal over 17 blocks"
),
"contrasts_vs_B": contrasts,
}
@staticmethod
def bootstrap_estimates(
values: np.ndarray,
class_ids: np.ndarray,
weights: np.ndarray,
*,
estimator: str,
chunk_size: int = 64,
) -> np.ndarray:
values = np.asarray(values, dtype=np.float64)
if values.shape[0] != NUM_SPECTRAL_IMAGES:
raise ValueError("spectral bootstrap values must be receiver-first")
if weights.shape != (BOOTSTRAP_REPLICATES, NUM_SPECTRAL_IMAGES):
raise ValueError("spectral bootstrap weights have the wrong shape")
if estimator not in {"image_equal", "class_equal"}:
raise ValueError(f"unknown bootstrap estimator: {estimator}")
tail = values.shape[1:]
flat = values.reshape(NUM_SPECTRAL_IMAGES, -1)
output = np.empty((BOOTSTRAP_REPLICATES, flat.shape[1]), dtype=np.float64)
classes = [
np.flatnonzero(class_ids == class_id) for class_id in range(NUM_CLASSES)
]
histogram = Counter(len(indices) for indices in classes)
if (
NUM_SPECTRAL_IMAGES == 4096
and NUM_CLASSES == 1000
and histogram != Counter({4: 904, 5: 96})
) or any(len(indices) == 0 for indices in classes):
raise ValueError("spectral bootstrap class balance changed")
class_scale = np.asarray(
[1.0 / (NUM_CLASSES * len(classes[int(class_id)])) for class_id in class_ids],
dtype=np.float64,
)
for start in range(0, flat.shape[1], chunk_size):
stop = min(start + chunk_size, flat.shape[1])
selected = flat[:, start:stop]
finite = np.isfinite(selected)
if estimator == "image_equal":
numerator = weights @ np.where(finite, selected, 0.0)
if finite.all():
output[:, start:stop] = numerator / NUM_SPECTRAL_IMAGES
else:
denominator = weights @ finite.astype(np.float64)
output[:, start:stop] = np.divide(
numerator,
denominator,
out=np.full_like(numerator, np.nan),
where=denominator > 0,
)
continue
if finite.all():
output[:, start:stop] = weights @ (selected * class_scale[:, None])
continue
accumulator = np.zeros(
(BOOTSTRAP_REPLICATES, stop - start), dtype=np.float64
)
class_count = np.zeros_like(accumulator, dtype=np.uint16)
for indices in classes:
local_weights = weights[:, indices]
local_values = selected[indices]
local_finite = finite[indices]
numerator = local_weights @ np.where(local_finite, local_values, 0.0)
denominator = local_weights @ local_finite.astype(np.float64)
defined = denominator > 0
accumulator[defined] += (numerator[defined] / denominator[defined])
class_count += defined.astype(np.uint16)
output[:, start:stop] = np.divide(
accumulator,
class_count,
out=np.full_like(accumulator, np.nan),
where=class_count > 0,
)
if np.any(np.isinf(output)):
raise ValueError("bootstrap estimator emitted Inf")
return output.reshape((BOOTSTRAP_REPLICATES,) + tail)
@staticmethod
def bootstrap_quantiles(estimates: np.ndarray) -> np.ndarray:
with warnings.catch_warnings(), np.errstate(invalid="ignore"):
warnings.simplefilter("ignore", category=RuntimeWarning)
quantiles = np.nanpercentile(
np.asarray(estimates, dtype=np.float64), [2.5, 50.0, 97.5], axis=0
)
return np.moveaxis(quantiles, 0, -1).astype(np.float64, copy=False)
def transfer_bootstrap(self, weights: np.ndarray) -> dict[str, Any]:
class_ids = self.tasks["B"].spectral["class_id"]
primary_values = np.stack(
[
np.stack(
[self.tasks[task_id].spectral[f"{basis}_transfer_primary"] for basis in BASES],
axis=1,
)
for task_id in CANONICAL_ARMS
],
axis=1,
)
conditional_values = np.stack(
[
np.stack(
[
self.tasks[task_id].spectral[f"{basis}_transfer_conditional"]
for basis in BASES
],
axis=1,
)
for task_id in CANONICAL_ARMS
],
axis=1,
)
# Shapes are receiver, task, basis, block, source band, target band.
expected_shape = (
NUM_SPECTRAL_IMAGES,
len(CANONICAL_ARMS),
len(BASES),
NUM_BLOCKS,
NUM_BANDS,
NUM_BANDS,
)
if primary_values.shape != expected_shape or conditional_values.shape != expected_shape:
raise AssertionError("transfer bootstrap stacking order changed")
primary_bootstrap = self.bootstrap_estimates(
primary_values, class_ids, weights, estimator="class_equal", chunk_size=32
)
primary_quantiles = self.bootstrap_quantiles(primary_bootstrap)
primary_defined_replicates = np.isfinite(primary_bootstrap).sum(
axis=0, dtype=np.int64
)
diagonal = np.arange(NUM_BANDS)
offdiag_bootstrap = primary_bootstrap.copy()
offdiag_bootstrap[..., diagonal, diagonal] = 0.0
m_off_bootstrap = offdiag_bootstrap.sum(axis=(-1, -2), dtype=np.float64) / NUM_BANDS
midpoints = np.asarray([0.125, 0.375, 0.625, 0.875], dtype=np.float64)
distance = np.abs(midpoints[:, None] - midpoints[None, :])
m_disp_bootstrap = (
(primary_bootstrap * distance).sum(axis=(-1, -2), dtype=np.float64) / NUM_BANDS
)
del offdiag_bootstrap
del primary_bootstrap
conditional_bootstrap = self.bootstrap_estimates(
conditional_values, class_ids, weights, estimator="class_equal", chunk_size=32
)
conditional_quantiles = self.bootstrap_quantiles(conditional_bootstrap)
conditional_defined_replicates = np.isfinite(conditional_bootstrap).sum(
axis=0, dtype=np.int64
)
del conditional_bootstrap
image_scalar_names = (
"m_res",
"m_res_conditional",
"suppressed_fraction",
"constant_gate_fraction",
)
image_scalar_values = np.empty(
(
NUM_SPECTRAL_IMAGES,
len(CANONICAL_ARMS),
len(BASES),
NUM_BLOCKS,
len(image_scalar_names),
),
dtype=np.float64,
)
for task_index, task_id in enumerate(CANONICAL_ARMS):
arrays = self.tasks[task_id].spectral
fields = (
arrays["projection_residual"],
arrays["projection_residual_conditional"],
arrays["projection_suppressed_fraction"],
arrays["constant_gate_fraction"],
)
for metric_index, field in enumerate(fields):
image_scalar_values[:, task_index, :, :, metric_index] = field[:, None, :]
image_scalar_bootstrap = self.bootstrap_estimates(
image_scalar_values, class_ids, weights, estimator="image_equal"
)
transfer_fraction_names = ("source_valid_fraction", "source_suppressed_fraction")
transfer_fraction_values = np.empty(
(
NUM_SPECTRAL_IMAGES,
len(CANONICAL_ARMS),
len(BASES),
NUM_BLOCKS,
len(transfer_fraction_names),
),
dtype=np.float64,
)
channel_counts = np.asarray(
[EXPANDED_CHANNELS_BY_STAGE[stage - 1] for stage in EXPECTED_STAGES],
dtype=np.float64,
)
for task_index, task_id in enumerate(CANONICAL_ARMS):
arrays = self.tasks[task_id].spectral
for basis_index, basis in enumerate(BASES):
valid = arrays[f"{basis}_transfer_source_valid"].sum(
axis=-1, dtype=np.float64
)
suppressed = arrays[f"{basis}_transfer_source_suppressed"].sum(
axis=-1, dtype=np.float64
)
transfer_fraction_values[:, task_index, basis_index, :, 0] = valid / (
NUM_BANDS * channel_counts[None, :]
)
with np.errstate(divide="ignore", invalid="ignore"):
transfer_fraction_values[:, task_index, basis_index, :, 1] = np.where(
valid > 0, suppressed / valid, np.nan
)
transfer_fraction_bootstrap = self.bootstrap_estimates(
transfer_fraction_values, class_ids, weights, estimator="class_equal"
)
scalar_names = (
"m_off",
"m_disp",
*image_scalar_names,
*transfer_fraction_names,
)
scalar_bootstrap = np.concatenate(
[
m_off_bootstrap[..., None],
m_disp_bootstrap[..., None],
image_scalar_bootstrap,
transfer_fraction_bootstrap,
],
axis=-1,
)
scalar_quantiles = self.bootstrap_quantiles(scalar_bootstrap)
scalar_defined_replicates = np.isfinite(scalar_bootstrap).sum(
axis=0, dtype=np.int64
)
with np.errstate(invalid="ignore"):
global_scalar_estimates = np.nanmean(
scalar_bootstrap, axis=3, dtype=np.float64
)
global_scalar_quantiles = self.bootstrap_quantiles(global_scalar_estimates)
del image_scalar_bootstrap
del transfer_fraction_bootstrap
primary_point = np.stack(
[
np.stack(
[
np.stack(
[
self.tasks[task_id].block_summary[
(basis, block, "gated_product")
]["transfer_primary"]
for block in range(NUM_BLOCKS)
]
)
for basis in BASES
]
)
for task_id in CANONICAL_ARMS
]
)
conditional_point = np.stack(
[
np.stack(
[
np.stack(
[
self.tasks[task_id].block_summary[
(basis, block, "gated_product")
]["transfer_conditional"]
for block in range(NUM_BLOCKS)
]
)
for basis in BASES
]
)
for task_id in CANONICAL_ARMS
]
)
scalar_point = np.empty(
(
len(CANONICAL_ARMS),
len(BASES),
NUM_BLOCKS,
len(scalar_names),
),
dtype=np.float64,
)
for task_index, task_id in enumerate(CANONICAL_ARMS):
for basis_index, basis in enumerate(BASES):
for block in range(NUM_BLOCKS):
row = self.tasks[task_id].block_summary[(basis, block, "gated_product")]
scalar_point[task_index, basis_index, block] = [
(
float(value)
if (
value := (
self.tasks[task_id].block_summary[
(basis, block, "gate_value")
][name]
if name == "constant_gate_fraction"
else row[name]
)
)
is not None
else np.nan
)
for name in scalar_names
]
if not np.allclose(
primary_point,
class_equal_array(primary_values.reshape(NUM_SPECTRAL_IMAGES, -1), class_ids).reshape(
primary_point.shape
),
rtol=0.0,
atol=1e-12,
equal_nan=True,
):
raise AssertionError("transfer bootstrap primary point estimator disagrees")
rows: list[dict[str, Any]] = []
for task_index, task_id in enumerate(CANONICAL_ARMS):
for basis_index, basis in enumerate(BASES):
for block in range(NUM_BLOCKS):
common = {
"task_id": task_id,
"arm": task_id,
"basis": basis,
"global_block_index": block,
"stage": EXPECTED_STAGES[block],
"block": EXPECTED_STAGE_BLOCKS[block],
"bootstrap_replicates": BOOTSTRAP_REPLICATES,
"bootstrap_seed": BOOTSTRAP_SEED,
}
for kind, point_array, quantile_array in (
("primary_cell", primary_point, primary_quantiles),
("conditional_cell", conditional_point, conditional_quantiles),
):
for source in range(NUM_BANDS):
for target in range(NUM_BANDS):
quantile = quantile_array[
task_index, basis_index, block, source, target
]
rows.append(
{
**common,
"summary": kind,
"source_band": source,
"target_band": target,
"point": finite_or_none(
point_array[
task_index, basis_index, block, source, target
]
),
"bootstrap_q025": finite_or_none(quantile[0]),
"bootstrap_q50": finite_or_none(quantile[1]),
"bootstrap_q975": finite_or_none(quantile[2]),
"defined": bool(
np.isfinite(
point_array[
task_index,
basis_index,
block,
source,
target,
]
)
),
"bootstrap_defined_replicates": int(
(
primary_defined_replicates
if kind == "primary_cell"
else conditional_defined_replicates
)[
task_index,
basis_index,
block,
source,
target,
]
),
}
)
for metric_index, metric in enumerate(scalar_names):
quantile = scalar_quantiles[
task_index, basis_index, block, metric_index
]
rows.append(
{
**common,
"summary": metric,
"source_band": "",
"target_band": "",
"point": finite_or_none(
scalar_point[task_index, basis_index, block, metric_index]
),
"bootstrap_q025": finite_or_none(quantile[0]),
"bootstrap_q50": finite_or_none(quantile[1]),
"bootstrap_q975": finite_or_none(quantile[2]),
"defined": bool(
np.isfinite(
scalar_point[
task_index, basis_index, block, metric_index
]
)
),
"bootstrap_defined_replicates": int(
scalar_defined_replicates[
task_index, basis_index, block, metric_index
]
),
}
)
return {
"task_names": np.asarray(CANONICAL_ARMS),
"quantile_levels": np.asarray([0.025, 0.5, 0.975], dtype=np.float64),
"primary_point": primary_point.astype(np.float64, copy=False),
"primary_quantiles": primary_quantiles,
"primary_defined": np.isfinite(primary_point),
"primary_defined_replicates": primary_defined_replicates,
"conditional_point": conditional_point.astype(np.float64, copy=False),
"conditional_quantiles": conditional_quantiles,
"conditional_defined": np.isfinite(conditional_point),
"conditional_defined_replicates": conditional_defined_replicates,
"scalar_names": np.asarray(scalar_names),
"scalar_point": scalar_point,
"scalar_quantiles": scalar_quantiles,
"scalar_defined": np.isfinite(scalar_point),
"scalar_defined_replicates": scalar_defined_replicates,
"global_scalar_quantiles": global_scalar_quantiles,
"_scalar_bootstrap": scalar_bootstrap,
"rows": rows,
}
def spectral_block_bootstrap(
self, weights: np.ndarray, transfer: dict[str, Any]
) -> dict[str, Any]:
class_ids = self.tasks["B"].spectral["class_id"]
signals = tuple(ROOT_SIGNAL_PREFIXES)
normalized_metrics = ROOT_SIGNAL_BOOTSTRAP_METRICS
normalized_values = np.empty(
(
NUM_SPECTRAL_IMAGES,
len(CANONICAL_ARMS),
len(BASES),
NUM_BLOCKS,
len(signals),
len(normalized_metrics),
),
dtype=np.float64,
)
normalized_point = np.empty(normalized_values.shape[1:], dtype=np.float64)
for task_index, task_id in enumerate(CANONICAL_ARMS):
arrays = self.tasks[task_id].spectral
for basis_index, basis in enumerate(BASES):
for signal_index, signal in enumerate(signals):
source_signal_index = SIGNAL_NAMES.index(signal)
for metric_index, metric in enumerate(normalized_metrics):
field = arrays[f"{basis}_psd_{metric.replace('psd_', '')}"]
normalized_values[
:, task_index, basis_index, :, signal_index, metric_index
] = field[:, :, source_signal_index]
normalized_point[
task_index, basis_index, :, signal_index, metric_index
] = [
(
self.tasks[task_id].block_summary[(basis, block, signal)][
metric
]
if self.tasks[task_id].block_summary[
(basis, block, signal)
][metric]
is not None
else np.nan
)
for block in range(NUM_BLOCKS)
]
normalized_bootstrap = self.bootstrap_estimates(
normalized_values, class_ids, weights, estimator="image_equal"
)
normalized_quantiles = self.bootstrap_quantiles(normalized_bootstrap)
normalized_stage_quantiles = np.empty(
(
len(CANONICAL_ARMS),
len(BASES),
4,
len(signals),
len(normalized_metrics),
3,
),
dtype=np.float64,
)
for stage in range(1, 5):
block_indices = [
index for index, block_stage in enumerate(EXPECTED_STAGES) if block_stage == stage
]
with np.errstate(invalid="ignore"):
stage_estimates = np.nanmean(
normalized_bootstrap[:, :, :, block_indices],
axis=3,
dtype=np.float64,
)
normalized_stage_quantiles[:, :, stage - 1] = self.bootstrap_quantiles(
stage_estimates
)
del normalized_bootstrap
transfer_scalar_names = tuple(str(item) for item in transfer["scalar_names"].tolist())
transfer_scalar_index = {
name: index for index, name in enumerate(transfer_scalar_names)
}
transfer_scalar_bootstrap = transfer["_scalar_bootstrap"]
extra_names = (
"jsd",
"output_minus_carrier_high_fraction",
"output_minus_carrier_centroid",
)
extra_values = np.empty(
(
NUM_SPECTRAL_IMAGES,
len(CANONICAL_ARMS),
len(BASES),
NUM_BLOCKS,
len(extra_names),
),
dtype=np.float64,
)
coherence_values = np.empty(
(
NUM_SPECTRAL_IMAGES,
len(CANONICAL_ARMS),
len(BASES),
NUM_BLOCKS,
len(COHERENCE_NAMES),
),
dtype=np.float64,
)
for task_index, task_id in enumerate(CANONICAL_ARMS):
arrays = self.tasks[task_id].spectral
for basis_index, basis in enumerate(BASES):
extra_values[:, task_index, basis_index, :, 0] = arrays[f"{basis}_jsd_xy"]
extra_values[:, task_index, basis_index, :, 1] = arrays[
f"{basis}_output_minus_carrier_high_fraction"
]
extra_values[:, task_index, basis_index, :, 2] = arrays[
f"{basis}_output_minus_carrier_centroid"
]
coherence_values[:, task_index, basis_index] = arrays["coherence_mean"]
extra_bootstrap = self.bootstrap_estimates(
extra_values, class_ids, weights, estimator="image_equal"
)
coherence_bootstrap = self.bootstrap_estimates(
coherence_values, class_ids, weights, estimator="class_equal"
)
extra_index = {name: index for index, name in enumerate(extra_names)}
coherence_index = {name: index for index, name in enumerate(COHERENCE_NAMES)}
operator_point = np.empty(
(len(CANONICAL_ARMS), len(BASES), NUM_BLOCKS, len(ROOT_OPERATOR_METRICS)),
dtype=np.float64,
)
operator_quantiles = np.empty(operator_point.shape + (3,), dtype=np.float64)
operator_stage_quantiles = np.empty(
(len(CANONICAL_ARMS), len(BASES), 4, len(ROOT_OPERATOR_METRICS), 3),
dtype=np.float64,
)
for metric_index, metric in enumerate(ROOT_OPERATOR_METRICS):
if metric in transfer_scalar_index:
estimates = transfer_scalar_bootstrap[..., transfer_scalar_index[metric]]
elif metric in extra_index:
estimates = extra_bootstrap[..., extra_index[metric]]
elif metric in coherence_index:
estimates = coherence_bootstrap[..., coherence_index[metric]]
else:
raise AssertionError(f"operator bootstrap metric has no estimator: {metric}")
operator_quantiles[..., metric_index, :] = self.bootstrap_quantiles(estimates)
for stage in range(1, 5):
block_indices = [
index
for index, block_stage in enumerate(EXPECTED_STAGES)
if block_stage == stage
]
with np.errstate(invalid="ignore"):
stage_estimates = np.nanmean(
estimates[:, :, :, block_indices], axis=3, dtype=np.float64
)
operator_stage_quantiles[:, :, stage - 1, metric_index] = (
self.bootstrap_quantiles(stage_estimates)
)
for task_index, task_id in enumerate(CANONICAL_ARMS):
for basis_index, basis in enumerate(BASES):
for block in range(NUM_BLOCKS):
signal = "gate_value" if metric == "constant_gate_fraction" else "gated_product"
value = self.tasks[task_id].block_summary[(basis, block, signal)][metric]
operator_point[task_index, basis_index, block, metric_index] = (
float(value) if value is not None else np.nan
)
del extra_bootstrap
del coherence_bootstrap
del transfer["_scalar_bootstrap"]
gate_metric_names = (
"gate_mean",
"gate_cv",
"gate_zero_fraction",
"gate_active_fraction",
"gate_clip_crossing_fraction",
)
gate_values = np.stack(
[
np.stack(
[self.tasks[task_id].spectral[name] for name in gate_metric_names],
axis=-1,
)
for task_id in CANONICAL_ARMS
],
axis=1,
)
gate_bootstrap = self.bootstrap_estimates(
gate_values, class_ids, weights, estimator="image_equal"
)
gate_quantiles = self.bootstrap_quantiles(gate_bootstrap)
del gate_bootstrap
gate_point = image_equal_array(gate_values.reshape(NUM_SPECTRAL_IMAGES, -1)).reshape(
len(CANONICAL_ARMS), NUM_BLOCKS, len(gate_metric_names)
)
return {
"signal_names": signals,
"normalized_metric_names": normalized_metrics,
"normalized_point": normalized_point,
"normalized_quantiles": normalized_quantiles,
"normalized_stage_quantiles": normalized_stage_quantiles,
"operator_metric_names": ROOT_OPERATOR_METRICS,
"operator_point": operator_point,
"operator_quantiles": operator_quantiles,
"operator_stage_quantiles": operator_stage_quantiles,
"gate_metric_names": gate_metric_names,
"gate_point": gate_point,
"gate_quantiles": gate_quantiles,
}
def wide_spectral_point_fields(
self, task_id: str, basis: str, block: int
) -> dict[str, Any]:
task = self.tasks[task_id]
fields: dict[str, Any] = {}
for signal, prefix in ROOT_SIGNAL_PREFIXES.items():
row = task.block_summary[(basis, block, signal)]
for metric in ROOT_SIGNAL_POINT_METRICS:
fields[f"{prefix}_{metric}"] = row[metric]
if metric in ROOT_SIGNAL_BOOTSTRAP_METRICS:
values = task.spectral[f"{basis}_psd_{metric.replace('psd_', '')}"][
:, block, SIGNAL_NAMES.index(signal)
]
fields[f"{prefix}_{metric}_defined"] = row[metric] is not None
fields[f"{prefix}_{metric}_valid_receivers"] = int(
np.isfinite(values).sum()
)
fields[f"{prefix}_valid"] = row["valid"]
fields[f"{prefix}_invalid"] = row["invalid"]
fields[f"{prefix}_log10_centered_energy_valid"] = row[
"log10_centered_energy_valid"
]
fields[f"{prefix}_log10_centered_energy_invalid"] = row[
"log10_centered_energy_invalid"
]
gate_row = task.block_summary[(basis, block, "gate_value")]
for metric in (
"gate_mean",
"gate_cv",
"gate_zero_fraction",
"gate_active_fraction",
"gate_clip_crossing_fraction",
):
fields[f"q_{metric}"] = gate_row[metric]
operator = task.block_summary[(basis, block, "gated_product")]
for metric in ROOT_OPERATOR_METRICS:
fields[metric] = (
gate_row[metric] if metric == "constant_gate_fraction" else operator[metric]
)
receiver_values = self._operator_receiver_values(task_id, basis, block, metric)
fields[f"{metric}_defined"] = fields[metric] is not None
fields[f"{metric}_valid_receivers"] = int(np.isfinite(receiver_values).sum())
fields.update(
{
"m_res_conditional_valid_channels": operator[
"m_res_conditional_valid_channels"
],
"constant_gate_count": gate_row["constant_gate_count"],
"source_valid": operator["source_valid"],
"source_suppressed": operator["source_suppressed"],
"jsd_valid_channels": operator["jsd_valid_channels"],
"jsd_invalid_channels": (
NUM_SPECTRAL_IMAGES
* EXPANDED_CHANNELS_BY_STAGE[EXPECTED_STAGES[block] - 1]
- operator["jsd_valid_channels"]
),
"output_minus_carrier_valid_channels": operator[
"output_minus_carrier_valid_channels"
],
"output_minus_carrier_invalid_channels": (
NUM_SPECTRAL_IMAGES
* EXPANDED_CHANNELS_BY_STAGE[EXPECTED_STAGES[block] - 1]
- operator["output_minus_carrier_valid_channels"]
),
}
)
return fields
def canonical_spectral_rows(self, statistics: dict[str, Any]) -> list[dict[str, Any]]:
signal_index = {
name: index for index, name in enumerate(statistics["signal_names"])
}
normalized_index = {
name: index for index, name in enumerate(statistics["normalized_metric_names"])
}
operator_index = {
name: index for index, name in enumerate(statistics["operator_metric_names"])
}
rows: list[dict[str, Any]] = []
for task_index, task_id in enumerate(CANONICAL_ARMS):
for basis_index, basis in enumerate(BASES):
for block in range(NUM_BLOCKS):
row: dict[str, Any] = {
"task_id": task_id,
"arm": task_id,
"basis": basis,
"global_block_index": block,
"stage": EXPECTED_STAGES[block],
"block": EXPECTED_STAGE_BLOCKS[block],
**self.wide_spectral_point_fields(task_id, basis, block),
}
for signal, prefix in ROOT_SIGNAL_PREFIXES.items():
for metric in ROOT_SIGNAL_BOOTSTRAP_METRICS:
quantile = statistics["normalized_quantiles"][
task_index,
basis_index,
block,
signal_index[signal],
normalized_index[metric],
]
row[f"{prefix}_{metric}_ci95_low"] = finite_or_none(quantile[0])
row[f"{prefix}_{metric}_ci95_high"] = finite_or_none(quantile[2])
for metric in ROOT_OPERATOR_METRICS:
quantile = statistics["operator_quantiles"][
task_index, basis_index, block, operator_index[metric]
]
row[f"{metric}_ci95_low"] = finite_or_none(quantile[0])
row[f"{metric}_ci95_high"] = finite_or_none(quantile[2])
rows.append(row)
if len(rows) != len(CANONICAL_ARMS) * len(BASES) * NUM_BLOCKS:
raise AssertionError("canonical wide spectral table does not have 170 rows")
return rows
def order_probe_spectral_rows(self) -> list[dict[str, Any]]:
rows: list[dict[str, Any]] = []
for task_id in ("D_order1", "D_order2", "B_order1"):
arm, order = EXPECTED_TASK[task_id]
for basis in BASES:
for block in range(NUM_BLOCKS):
rows.append(
{
"task_id": task_id,
"arm": arm,
"order": order,
"basis": basis,
"global_block_index": block,
"stage": EXPECTED_STAGES[block],
"block": EXPECTED_STAGE_BLOCKS[block],
**self.wide_spectral_point_fields(task_id, basis, block),
}
)
return rows
def d_order_sensitivity_rows(
self, raw_rows: Sequence[dict[str, Any]]
) -> list[dict[str, Any]]:
raw_lookup = {
(
row["task_id"],
row["global_block_index"],
row["signal"],
row["metric"],
): row
for row in raw_rows
}
rows: list[dict[str, Any]] = []
for basis in BASES:
for block in range(NUM_BLOCKS):
task_fields = {
task_id: self.wide_spectral_point_fields(task_id, basis, block)
for task_id in D_ORDER_TASKS
}
row: dict[str, Any] = {
"basis": basis,
"global_block_index": block,
"stage": EXPECTED_STAGES[block],
"block": EXPECTED_STAGE_BLOCKS[block],
"registered_task_count": len(D_ORDER_TASKS),
}
def add_range(metric: str, values: Sequence[Any]) -> None:
converted = [finite_or_none(value) for value in values]
for task_id, value in zip(D_ORDER_TASKS, converted, strict=True):
row[f"{metric}_{task_id}"] = value
row[f"{metric}_{task_id}_defined"] = value is not None
finite = [value for value in converted if value is not None]
alternate_min, alternate_max, alternate_defined = (
complete_alternate_range(converted[1:])
)
row[f"{metric}_min"] = min(finite) if finite else None
row[f"{metric}_max"] = max(finite) if finite else None
row[f"{metric}_alternate_min"] = alternate_min
row[f"{metric}_alternate_max"] = alternate_max
row[f"{metric}_alternate_range_defined"] = alternate_defined
row[f"{metric}_defined_count"] = len(finite)
for metric in D_ORDER_RANGE_POINT_METRICS:
add_range(
metric,
[task_fields[task_id].get(metric) for task_id in D_ORDER_TASKS],
)
for signal, prefix in ROOT_SIGNAL_PREFIXES.items():
for metric in (
"centered_rms",
"log10_centered_energy",
"noncentered_rms",
):
for statistic in ("dataset_median", "q25", "q75"):
name = f"raw_{prefix}_{metric}_{statistic}"
add_range(
name,
[
raw_lookup[(task_id, block, signal, metric)][statistic]
for task_id in D_ORDER_TASKS
],
)
for metric in (
"gate_mean",
"gate_cv",
"gate_zero_fraction",
"gate_active_fraction",
"gate_clip_crossing_fraction",
):
for statistic in ("dataset_median", "q25", "q75"):
name = f"raw_q_{metric}_{statistic}"
add_range(
name,
[
raw_lookup[
(task_id, block, "gate_value", metric)
][statistic]
for task_id in D_ORDER_TASKS
],
)
for kind in ("primary", "conditional"):
matrices = {
task_id: self.tasks[task_id].block_summary[
(basis, block, "gated_product")
][f"transfer_{kind}"]
for task_id in D_ORDER_TASKS
}
for source in range(NUM_BANDS):
for target in range(NUM_BANDS):
metric = f"transfer_{kind}_s{source}_t{target}"
add_range(
metric,
[
matrices[task_id][source, target]
for task_id in D_ORDER_TASKS
],
)
rows.append(row)
if len(rows) != len(BASES) * NUM_BLOCKS:
raise AssertionError("D registered-order range table must contain 34 rows")
return rows
def canonical_stage_rows(self, statistics: dict[str, Any]) -> list[dict[str, Any]]:
signal_index = {
name: index for index, name in enumerate(statistics["signal_names"])
}
normalized_index = {
name: index for index, name in enumerate(statistics["normalized_metric_names"])
}
operator_index = {
name: index for index, name in enumerate(statistics["operator_metric_names"])
}
rows: list[dict[str, Any]] = []
for task_index, task_id in enumerate(CANONICAL_ARMS):
for basis_index, basis in enumerate(BASES):
for stage in range(1, 5):
block_indices = [
index
for index, block_stage in enumerate(EXPECTED_STAGES)
if block_stage == stage
]
for signal in ROOT_SIGNAL_PREFIXES:
row: dict[str, Any] = {
"task_id": task_id,
"arm": task_id,
"basis": basis,
"stage": stage,
"signal": signal,
"aggregation": "block_equal",
"block_count": len(block_indices),
}
for metric in ROOT_STAGE_METRICS:
keys = (
f"{metric}_mean",
f"{metric}_block_min",
f"{metric}_block_max",
f"{metric}_ci95_low",
f"{metric}_ci95_high",
f"{metric}_defined",
f"{metric}_valid_block_count",
)
if metric in normalized_index:
points = statistics["normalized_point"][
task_index,
basis_index,
block_indices,
signal_index[signal],
normalized_index[metric],
]
quantile = statistics["normalized_stage_quantiles"][
task_index,
basis_index,
stage - 1,
signal_index[signal],
normalized_index[metric],
]
finite_points = points[np.isfinite(points)]
values = (
image_equal_mean(finite_points)
if finite_points.size
else None,
float(finite_points.min()) if finite_points.size else None,
float(finite_points.max()) if finite_points.size else None,
finite_or_none(quantile[0]),
finite_or_none(quantile[2]),
bool(finite_points.size),
int(finite_points.size),
)
elif signal == "gated_product" and metric in operator_index:
points = statistics["operator_point"][
task_index,
basis_index,
block_indices,
operator_index[metric],
]
quantile = statistics["operator_stage_quantiles"][
task_index,
basis_index,
stage - 1,
operator_index[metric],
]
finite_points = points[np.isfinite(points)]
values = (
image_equal_mean(finite_points)
if finite_points.size
else None,
float(finite_points.min()) if finite_points.size else None,
float(finite_points.max()) if finite_points.size else None,
finite_or_none(quantile[0]),
finite_or_none(quantile[2]),
bool(finite_points.size),
int(finite_points.size),
)
else:
values = (None, None, None, None, None, False, 0)
row.update(dict(zip(keys, values, strict=True)))
rows.append(row)
expected = len(CANONICAL_ARMS) * len(BASES) * 4 * len(ROOT_SIGNAL_PREFIXES)
if len(rows) != expected:
raise AssertionError("canonical stage table coverage changed")
return rows
def gate_operating_rows(
self, statistics: dict[str, Any], weights: np.ndarray
) -> list[dict[str, Any]]:
operator_index = {
name: index for index, name in enumerate(statistics["operator_metric_names"])
}
gate_index = {
name: index for index, name in enumerate(statistics["gate_metric_names"])
}
rows: list[dict[str, Any]] = []
for task_id in TASK_ORDER:
arm, order = EXPECTED_TASK[task_id]
canonical = task_id in CANONICAL_ARMS
task_index = CANONICAL_ARMS.index(task_id) if canonical else None
for block in range(NUM_BLOCKS):
stage = EXPECTED_STAGES[block]
stage_blocks = [
index for index, value in enumerate(EXPECTED_STAGES) if value == stage
]
for metric in statistics["gate_metric_names"]:
points = np.asarray(
[
self.tasks[task_id].block_summary[
("fft", index, "gate_value")
][metric]
for index in stage_blocks
],
dtype=np.float64,
)
quantile = (
statistics["gate_quantiles"][task_index, block, gate_index[metric]]
if canonical
else None
)
receiver_values = self.tasks[task_id].spectral[metric][:, block]
finite_values = receiver_values[np.isfinite(receiver_values)]
if finite_values.size != NUM_SPECTRAL_IMAGES:
raise ValueError(
f"gate operating row {task_id}/block{block}/{metric} is incomplete"
)
median_ci = (
self.weighted_bootstrap_median_ci(receiver_values, weights)
if canonical
else (None, None)
)
rows.append(
{
"task_id": task_id,
"arm": arm,
"order": order,
"basis": "",
"global_block_index": block,
"stage": stage,
"block": EXPECTED_STAGE_BLOCKS[block],
"metric": metric,
"aggregation": "receiver_image_equal_mean",
"point": self.tasks[task_id].block_summary[
("fft", block, "gate_value")
][metric],
"dataset_median": float(np.median(finite_values)),
"q25": float(np.percentile(finite_values, 25.0)),
"q75": float(np.percentile(finite_values, 75.0)),
"median_bootstrap_ci95_low": median_ci[0],
"median_bootstrap_ci95_high": median_ci[1],
"block_stage_min": float(points.min()),
"block_stage_max": float(points.max()),
"bootstrap_ci95_low": float(quantile[0]) if quantile is not None else None,
"bootstrap_ci95_high": float(quantile[2]) if quantile is not None else None,
"bootstrap_replicates": BOOTSTRAP_REPLICATES if canonical else None,
"valid_receivers": int(finite_values.size),
"invalid_receivers": int(
NUM_SPECTRAL_IMAGES - finite_values.size
),
}
)
for basis_index, basis in enumerate(BASES):
for metric in ROOT_OPERATOR_METRICS:
signal = "gate_value" if metric == "constant_gate_fraction" else "gated_product"
stage_points = np.asarray(
[
(
self.tasks[task_id].block_summary[
(basis, index, signal)
][metric]
if self.tasks[task_id].block_summary[
(basis, index, signal)
][metric]
is not None
else np.nan
)
for index in stage_blocks
],
dtype=np.float64,
)
finite_stage_points = stage_points[np.isfinite(stage_points)]
quantile = (
statistics["operator_quantiles"][
task_index, basis_index, block, operator_index[metric]
]
if canonical
else None
)
receiver_values = self._operator_receiver_values(task_id, basis, block, metric)
valid_receivers = int(np.isfinite(receiver_values).sum())
rows.append(
{
"task_id": task_id,
"arm": arm,
"order": order,
"basis": basis,
"global_block_index": block,
"stage": stage,
"block": EXPECTED_STAGE_BLOCKS[block],
"metric": metric,
"aggregation": (
"receiver_class_equal_mean"
if metric
in {
"rho_used",
"rho_response",
"m_off",
"m_disp",
"source_valid_fraction",
"source_suppressed_fraction",
}
else "receiver_image_equal_mean"
),
"point": self.tasks[task_id].block_summary[
(basis, block, signal)
][metric],
"dataset_median": None,
"q25": None,
"q75": None,
"median_bootstrap_ci95_low": None,
"median_bootstrap_ci95_high": None,
"block_stage_min": (
float(finite_stage_points.min())
if finite_stage_points.size
else None
),
"block_stage_max": (
float(finite_stage_points.max())
if finite_stage_points.size
else None
),
"bootstrap_ci95_low": (
finite_or_none(quantile[0])
if quantile is not None
else None
),
"bootstrap_ci95_high": (
finite_or_none(quantile[2])
if quantile is not None
else None
),
"bootstrap_replicates": (
BOOTSTRAP_REPLICATES if canonical else None
),
"valid_receivers": valid_receivers,
"invalid_receivers": NUM_SPECTRAL_IMAGES - valid_receivers,
}
)
return rows
def _operator_receiver_values(
self, task_id: str, basis: str, block: int, metric: str
) -> np.ndarray:
arrays = self.tasks[task_id].spectral
direct = {
"rho_used": ("coherence_mean", 0),
"rho_response": ("coherence_mean", 1),
}
if metric in direct:
field, index = direct[metric]
return arrays[field][:, block, index]
simple_fields = {
"jsd": f"{basis}_jsd_xy",
"m_res": "projection_residual",
"m_res_conditional": "projection_residual_conditional",
"suppressed_fraction": "projection_suppressed_fraction",
"constant_gate_fraction": "constant_gate_fraction",
"output_minus_carrier_high_fraction": (
f"{basis}_output_minus_carrier_high_fraction"
),
"output_minus_carrier_centroid": f"{basis}_output_minus_carrier_centroid",
}
if metric in simple_fields:
return arrays[simple_fields[metric]][:, block]
valid = arrays[f"{basis}_transfer_source_valid"][:, block].sum(
axis=-1, dtype=np.float64
)
if metric == "source_valid_fraction":
channels = EXPANDED_CHANNELS_BY_STAGE[EXPECTED_STAGES[block] - 1]
return valid / (NUM_BANDS * channels)
if metric == "source_suppressed_fraction":
suppressed = arrays[f"{basis}_transfer_source_suppressed"][:, block].sum(
axis=-1, dtype=np.float64
)
with np.errstate(divide="ignore", invalid="ignore"):
return np.where(valid > 0, suppressed / valid, np.nan)
if metric in {"m_off", "m_disp"}:
matrix = arrays[f"{basis}_transfer_primary"][:, block].copy()
if metric == "m_off":
diagonal = np.arange(NUM_BANDS)
matrix[:, diagonal, diagonal] = 0.0
return np.nansum(matrix, axis=(-1, -2), dtype=np.float64) / NUM_BANDS
midpoints = np.asarray([0.125, 0.375, 0.625, 0.875], dtype=np.float64)
distance = np.abs(midpoints[:, None] - midpoints[None, :])
return np.nansum(matrix * distance, axis=(-1, -2), dtype=np.float64) / NUM_BANDS
raise AssertionError(f"unknown operator receiver metric: {metric}")
@staticmethod
def weighted_bootstrap_median_ci(
values: np.ndarray, weights: np.ndarray
) -> tuple[float, float]:
values = np.asarray(values, dtype=np.float64)
if values.shape != (NUM_SPECTRAL_IMAGES,):
raise ValueError("bootstrap median input must have 4,096 receiver values")
finite = np.isfinite(values)
if not finite.any():
raise ValueError("bootstrap median input has no finite receiver values")
order = np.argsort(values, kind="stable")
ordered_values = values[order]
ordered_finite = finite[order]
ordered_weights = weights[:, order]
cumulative = np.cumsum(ordered_weights, axis=1, dtype=np.uint16)
valid_total = ordered_weights[:, ordered_finite].sum(axis=1, dtype=np.uint16)
if np.any(valid_total == 0):
raise ValueError("a stratified bootstrap replicate has no valid receiver values")
lower_rank = (valid_total.astype(np.int64) + 1) // 2
upper_rank = (valid_total.astype(np.int64) + 2) // 2
lower_index = np.argmax(cumulative >= lower_rank[:, None], axis=1)
upper_index = np.argmax(cumulative >= upper_rank[:, None], axis=1)
medians = 0.5 * (ordered_values[lower_index] + ordered_values[upper_index])
if not np.all(np.isfinite(medians)):
raise ValueError("bootstrap median calculation selected undefined values")
return (
float(np.percentile(medians, 2.5)),
float(np.percentile(medians, 97.5)),
)
def raw_amplitude_diagnostics(
self, weights: np.ndarray
) -> list[dict[str, Any]]:
rows: list[dict[str, Any]] = []
signals = ("carrier", "gate_value", "gated_product")
metrics = {
"centered_rms": "signal_centered_rms",
"log10_centered_energy": "signal_log10_centered_energy",
"noncentered_rms": "signal_noncentered_rms",
}
for task_id in TASK_ORDER:
task = self.tasks[task_id]
arm, order = EXPECTED_TASK[task_id]
for block in range(NUM_BLOCKS):
for signal in signals:
signal_index = SIGNAL_NAMES.index(signal)
for metric, field in metrics.items():
values = task.spectral[field][:, block, signal_index]
finite_values = values[np.isfinite(values)]
if finite_values.size == 0:
ci_low = ci_high = None
replicates = (
BOOTSTRAP_REPLICATES if task_id in CANONICAL_ARMS else None
)
dataset_median = q25 = q75 = None
elif task_id in CANONICAL_ARMS:
ci_low, ci_high = self.weighted_bootstrap_median_ci(
values, weights
)
replicates: int | None = BOOTSTRAP_REPLICATES
dataset_median = float(np.median(finite_values))
q25 = float(np.percentile(finite_values, 25.0))
q75 = float(np.percentile(finite_values, 75.0))
else:
ci_low, ci_high, replicates = None, None, None
dataset_median = float(np.median(finite_values))
q25 = float(np.percentile(finite_values, 25.0))
q75 = float(np.percentile(finite_values, 75.0))
rows.append(
{
"task_id": task_id,
"arm": arm,
"order": order,
"global_block_index": block,
"stage": int(task.spectral["block_stage"][block]),
"block": int(task.spectral["block_within_stage"][block]),
"signal": signal,
"metric": metric,
"dataset_median": dataset_median,
"q25": q25,
"q75": q75,
"bootstrap_ci95_low": ci_low,
"bootstrap_ci95_high": ci_high,
"bootstrap_replicates": replicates,
"valid_receivers": int(finite_values.size),
"invalid_receivers": int(NUM_SPECTRAL_IMAGES - finite_values.size),
}
)
for metric in (
"gate_mean",
"gate_cv",
"gate_zero_fraction",
"gate_active_fraction",
"gate_clip_crossing_fraction",
):
values = task.spectral[metric][:, block]
finite_values = values[np.isfinite(values)]
if finite_values.size != NUM_SPECTRAL_IMAGES:
raise ValueError(
f"gate operating metric {task_id}/block{block}/{metric} is incomplete"
)
if task_id in CANONICAL_ARMS:
ci_low, ci_high = self.weighted_bootstrap_median_ci(values, weights)
replicates = BOOTSTRAP_REPLICATES
else:
ci_low, ci_high, replicates = None, None, None
rows.append(
{
"task_id": task_id,
"arm": arm,
"order": order,
"global_block_index": block,
"stage": int(task.spectral["block_stage"][block]),
"block": int(task.spectral["block_within_stage"][block]),
"signal": "gate_value",
"metric": metric,
"dataset_median": float(np.median(finite_values)),
"q25": float(np.percentile(finite_values, 25.0)),
"q75": float(np.percentile(finite_values, 75.0)),
"bootstrap_ci95_low": ci_low,
"bootstrap_ci95_high": ci_high,
"bootstrap_replicates": replicates,
"valid_receivers": int(finite_values.size),
"invalid_receivers": int(NUM_SPECTRAL_IMAGES - finite_values.size),
}
)
return rows
def coherence_diagnostics(self) -> list[dict[str, Any]]:
rows: list[dict[str, Any]] = []
for task_id in TASK_ORDER:
task = self.tasks[task_id]
arm, order = EXPECTED_TASK[task_id]
for block in range(NUM_BLOCKS):
channel_count = EXPANDED_CHANNELS_BY_STAGE[
int(task.spectral["block_stage"][block]) - 1
]
for coherence_index, coherence_name in enumerate(COHERENCE_NAMES):
values = task.spectral["coherence_mean"][:, block, coherence_index]
valid_channels = task.spectral["coherence_valid_channels"][
:, block, coherence_index
]
finite = values[np.isfinite(values)]
rows.append(
{
"task_id": task_id,
"arm": arm,
"order": order,
"global_block_index": block,
"stage": int(task.spectral["block_stage"][block]),
"block": int(task.spectral["block_within_stage"][block]),
"coherence": coherence_name,
"class_equal_mean": optional_class_equal_mean(
values, task.spectral["class_id"]
),
"receiver_mean_sd": (
float(finite.std(ddof=0, dtype=np.float64))
if finite.size
else None
),
"receiver_mean_q05": (
float(np.percentile(finite, 5.0)) if finite.size else None
),
"receiver_mean_q50": (
float(np.percentile(finite, 50.0)) if finite.size else None
),
"receiver_mean_q95": (
float(np.percentile(finite, 95.0)) if finite.size else None
),
"valid_channels": int(valid_channels.sum(dtype=np.int64)),
"invalid_channels": int(
NUM_SPECTRAL_IMAGES * channel_count
- valid_channels.sum(dtype=np.int64)
),
"valid_receivers": int(finite.size),
"invalid_receivers": int(NUM_SPECTRAL_IMAGES - finite.size),
}
)
return rows
def claim_decision(
self,
bootstrap: dict[str, Any],
raw_amplitude_rows: Sequence[dict[str, Any]] | None = None,
) -> tuple[dict[str, Any], dict[str, dict[str, float]]]:
points = {
task_id: self.task_global_metrics(self.tasks[task_id]) for task_id in TASK_ORDER
}
def at_least(left: Any, right: Any) -> bool:
values = finite_values((left, right))
return values is not None and values[0] >= values[1]
def difference_at_least(left: Any, right: Any, margin: float) -> bool:
values = finite_values((left, right))
return values is not None and values[0] - values[1] >= margin
def difference_at_most(left: Any, right: Any, margin: float) -> bool:
values = finite_values((left, right))
return values is not None and values[0] - values[1] <= margin
def stage_metric_mean(
task_id: str, basis: str, metric: str, block_indices: Sequence[int]
) -> float | None:
values = finite_values(
self.tasks[task_id].block_summary[
(basis, index, "gated_product")
].get(metric)
for index in block_indices
)
return (
float(np.mean(np.asarray(values, dtype=np.float64), dtype=np.float64))
if values is not None
else None
)
def global_conditional_m_off(task_id: str, basis: str) -> float | None:
block_values: list[float] = []
diagonal = np.arange(NUM_BANDS)
for block in range(NUM_BLOCKS):
matrix = np.asarray(
self.tasks[task_id].block_summary[
(basis, block, "gated_product")
]["transfer_conditional"],
dtype=np.float64,
)
if matrix.shape != (NUM_BANDS, NUM_BANDS) or not np.all(
np.isfinite(matrix)
):
return None
offdiag = matrix.copy()
offdiag[diagonal, diagonal] = 0.0
block_values.append(
float(offdiag.sum(dtype=np.float64) / NUM_BANDS)
)
return float(np.mean(np.asarray(block_values), dtype=np.float64))
def protocol_raw_global(task_id: str) -> float | None:
if raw_amplitude_rows is None:
return None
values = finite_values(
row["dataset_median"]
for row in raw_amplitude_rows
if row["task_id"] == task_id
and row["signal"] == "gated_product"
and row["metric"] == "centered_rms"
)
return (
float(np.mean(np.asarray(values), dtype=np.float64))
if values is not None and len(values) == NUM_BLOCKS
else None
)
contrasts = bootstrap["contrasts_vs_B"]
comparable: dict[str, bool] = {}
comparable_details: dict[str, Any] = {}
for task_id in ("D", "S", "C", "SC"):
fft_ok = True
dct_ok = True
metric_details: dict[str, Any] = {}
for metric in ("m_off", "m_res"):
fft = contrasts[task_id][f"fft_{metric}"]
dct = contrasts[task_id][f"dct_{metric}"]
fft_point = finite_or_none(fft.get("relative_difference_point"))
dct_point = finite_or_none(dct.get("relative_difference_point"))
fft_ci90 = finite_values(fft.get("relative_difference_ci90") or ())
bootstrap_defined = bool(fft.get("relative_difference_defined")) and bool(
dct.get("relative_difference_defined")
)
if (
not bootstrap_defined
or fft_point is None
or dct_point is None
or fft_ci90 is None
or len(fft_ci90) != 2
):
fft_ok = False
dct_ok = False
metric_details[metric] = {
"fft_relative_difference_defined": bool(
fft.get("relative_difference_defined")
),
"dct_relative_difference_defined": bool(
dct.get("relative_difference_defined")
),
"fft_bootstrap_defined_replicates": int(
finite_or_none(fft.get("bootstrap_defined_replicates")) or 0
),
"dct_bootstrap_defined_replicates": int(
finite_or_none(dct.get("bootstrap_defined_replicates")) or 0
),
"equivalence_forbidden": True,
}
continue
this_fft = (
abs(fft_point) <= 0.10
and fft_ci90[0] >= -0.10
and fft_ci90[1] <= 0.10
)
direction_agrees = (
abs(fft_point) <= 1e-15
or abs(dct_point) <= 1e-15
or math.copysign(1.0, fft_point) == math.copysign(1.0, dct_point)
)
this_dct = abs(dct_point) <= 0.15 and direction_agrees
fft_ok = fft_ok and this_fft
dct_ok = dct_ok and this_dct
metric_details[metric] = {
"fft_relative_difference": fft_point,
"fft_ci90": fft_ci90,
"fft_equivalent": this_fft,
"dct_relative_difference": dct_point,
"dct_robustness_passed": this_dct,
}
suppression_values = finite_values(
(
points[task_id]["fft_source_suppressed_fraction"],
points["B"]["fft_source_suppressed_fraction"],
)
)
suppression_difference = (
abs(suppression_values[0] - suppression_values[1])
if suppression_values is not None
else None
)
comparable[task_id] = bool(
fft_ok
and dct_ok
and suppression_difference is not None
and suppression_difference <= 0.05
)
comparable_details[task_id] = {
"supported": comparable[task_id],
"metrics": metric_details,
"suppressed_fraction_absolute_difference": suppression_difference,
"suppressed_fraction_defined": suppression_difference is not None,
"suppressed_fraction_metric": "fft_source_suppressed_fraction",
}
accuracy_values = finite_values(
(
points["D"]["top1"],
points["B"]["top1"],
points["S"]["top1"],
points["C"]["top1"],
points["SC"]["top1"],
)
)
accuracy_direction = bool(
accuracy_values is not None
and accuracy_values[0] < accuracy_values[1]
and accuracy_values[2] < accuracy_values[1]
and accuracy_values[3] < accuracy_values[1]
and accuracy_values[4] < accuracy_values[3]
)
baseline_mixing_defined = all(
(
value := finite_or_none(points["B"][f"{basis}_{metric}"])
)
is not None
and value >= 1e-6
for basis in BASES
for metric in ("m_off", "m_res")
)
d_tasks = ("D", "D_order1", "D_order2")
d_substantial = baseline_mixing_defined and all(
at_least(
points[task_id][f"{basis}_{metric}"],
0.5 * float(points["B"][f"{basis}_{metric}"]),
)
for task_id in d_tasks
for basis in BASES
for metric in ("m_off", "m_res")
)
d_accuracy_gap = all(
difference_at_least(points["B"]["top1"], points[task_id]["top1"], 10.0)
for task_id in d_tasks
)
conditional_transfer_pairs = {
basis: (
global_conditional_m_off("D", basis),
global_conditional_m_off("B", basis),
)
for basis in BASES
}
raw_energy_pair = (protocol_raw_global("D"), protocol_raw_global("B"))
normalized_psd_pair = (
stage_metric_mean("D", "fft", "psd_high_fraction", range(NUM_BLOCKS)),
stage_metric_mean("B", "fft", "psd_high_fraction", range(NUM_BLOCKS)),
)
d_energy_not_lower = bool(
at_least(raw_energy_pair[0], raw_energy_pair[1])
or at_least(normalized_psd_pair[0], normalized_psd_pair[1])
)
conditional_transfer_pair = conditional_transfer_pairs["fft"]
d_accuracy_pair = (points["D"]["top1"], points["B"]["top1"])
section_states = {
"accuracy": registered_decline_state(*d_accuracy_pair),
"raw_energy": registered_decline_state(*raw_energy_pair),
"normalized_psd": registered_decline_state(*normalized_psd_pair),
"conditional_transfer": registered_decline_state(
*conditional_transfer_pair
),
}
d_accuracy_defined = section_states["accuracy"] != "undefined"
raw_energy_defined = section_states["raw_energy"] != "undefined"
normalized_psd_defined = section_states["normalized_psd"] != "undefined"
conditional_transfer_defined = (
section_states["conditional_transfer"] != "undefined"
)
d_accuracy_declines = section_states["accuracy"] == "decline"
raw_energy_declines = section_states["raw_energy"] == "decline"
normalized_psd_declines = section_states["normalized_psd"] == "decline"
conditional_transfer_declines = (
section_states["conditional_transfer"] == "decline"
)
section_11_3_inputs_defined = bool(
d_accuracy_defined
and raw_energy_defined
and normalized_psd_defined
and conditional_transfer_defined
)
section_11_3_joint_decline_observed = section_11_3_joint_decline(
d_accuracy_declines,
raw_energy_declines,
normalized_psd_declines,
conditional_transfer_declines,
)
section_11_3_correlational_caveat = bool(
section_11_3_joint_decline_observed or not section_11_3_inputs_defined
)
indiscriminate_exclusion = bool(
(comparable["D"] or d_energy_not_lower)
and not section_11_3_correlational_caveat
)
c_adaptation = baseline_mixing_defined and (
difference_at_most(points["B"]["top1"], points["C"]["top1"], 2.0)
and all(
at_least(
points["C"][f"{basis}_{metric}"],
0.8 * float(points["B"][f"{basis}_{metric}"]),
)
for basis in BASES
for metric in ("m_off", "m_res")
)
)
sc_gradient_gap = difference_at_least(
points["C"]["top1"], points["SC"]["top1"], 3.0
)
stage_consistency = True
stage_details: dict[str, Any] = {}
for stage in range(1, 5):
block_indices = [index for index, value in enumerate(EXPECTED_STAGES) if value == stage]
row: dict[str, Any] = {}
for basis in BASES:
for metric, threshold in (("m_off", 0.5), ("m_res", 0.5)):
d_value = stage_metric_mean("D", basis, metric, block_indices)
b_value = stage_metric_mean("B", basis, metric, block_indices)
ratio_defined = bool(
d_value is not None and b_value is not None and b_value >= 1e-6
)
passed = bool(
ratio_defined and d_value >= threshold * b_value
)
stage_consistency = stage_consistency and passed
row[f"{basis}_D_over_B_{metric}"] = (
d_value / b_value if ratio_defined else None
)
row[f"{basis}_D_over_B_{metric}_defined"] = ratio_defined
for metric in ("m_off", "m_res"):
c_value = stage_metric_mean("C", basis, metric, block_indices)
b_value = stage_metric_mean("B", basis, metric, block_indices)
ratio_defined = bool(
c_value is not None and b_value is not None and b_value >= 1e-6
)
passed = bool(ratio_defined and c_value >= 0.8 * b_value)
stage_consistency = stage_consistency and passed
row[f"{basis}_C_over_B_{metric}"] = (
c_value / b_value if ratio_defined else None
)
row[f"{basis}_C_over_B_{metric}_defined"] = ratio_defined
stage_details[str(stage)] = row
direction_tolerance = 1e-8
direction_registry = (
("D", "B", ("m_off", "m_res", "psd_high_fraction")),
("S", "B", ("m_off", "m_res")),
("C", "B", ("m_off", "m_res")),
("SC", "C", ("m_off", "m_res")),
)
fft_dct_direction = True
direction_details: dict[str, Any] = {}
for left_task, right_task, metrics in direction_registry:
for metric in metrics:
key = f"{left_task}_vs_{right_task}:{metric}"
fft_left = points[left_task][f"fft_{metric}"]
fft_right = points[right_task][f"fft_{metric}"]
dct_left = points[left_task][f"dct_{metric}"]
dct_right = points[right_task][f"dct_{metric}"]
global_values = finite_values(
(fft_left, fft_right, dct_left, dct_right)
)
global_defined = global_values is not None
fft_delta = (
float(global_values[0] - global_values[1])
if global_values is not None
else None
)
dct_delta = (
float(global_values[2] - global_values[3])
if global_values is not None
else None
)
global_agrees = global_defined and ((
abs(fft_delta) <= direction_tolerance
and abs(dct_delta) <= direction_tolerance
) or (
abs(fft_delta) > direction_tolerance
and abs(dct_delta) > direction_tolerance
and math.copysign(1.0, fft_delta) == math.copysign(1.0, dct_delta)
))
stage_agreement: dict[str, bool] = {}
for stage in range(1, 5):
block_indices = [
index
for index, value in enumerate(EXPECTED_STAGES)
if value == stage
]
stage_delta: dict[str, float | None] = {}
for basis in BASES:
left = stage_metric_mean(
left_task, basis, metric, block_indices
)
right = stage_metric_mean(
right_task, basis, metric, block_indices
)
stage_delta[basis] = (
float(left - right)
if left is not None and right is not None
else None
)
stage_defined = all(value is not None for value in stage_delta.values())
stage_agreement[str(stage)] = stage_defined and ((
abs(stage_delta["fft"]) <= direction_tolerance
and abs(stage_delta["dct"]) <= direction_tolerance
) or (
abs(stage_delta["fft"]) > direction_tolerance
and abs(stage_delta["dct"]) > direction_tolerance
and math.copysign(1.0, stage_delta["fft"])
== math.copysign(1.0, stage_delta["dct"])
))
passed = global_agrees and all(stage_agreement.values())
fft_dct_direction = fft_dct_direction and passed
direction_details[key] = {
"fft_global_delta": fft_delta,
"dct_global_delta": dct_delta,
"global_agreement": global_agrees,
"stage_agreement": stage_agreement,
"passed": passed,
}
conditions = {
"B_mixing_denominators_defined": baseline_mixing_defined,
"registered_accuracy_directions": accuracy_direction,
"D_substantial_mixing_all_orders": d_substantial,
"D_top1_gap_at_least_10_all_orders": d_accuracy_gap,
"D_quantity_only_explanation_excluded": indiscriminate_exclusion,
"C_preserves_80pct_mixing_and_within_2_top1": c_adaptation,
"SC_at_least_3_top1_below_C": sc_gradient_gap,
"stage_consistency": stage_consistency,
"fft_dct_direction_agreement": fft_dct_direction,
}
strong_supported = all(conditions.values())
d_top1_values = finite_values(
points[task_id]["top1"] for task_id in d_tasks[1:]
)
d_moff_values = finite_values(
stage_metric_mean(task_id, "fft", "m_off", range(NUM_BLOCKS))
for task_id in d_tasks[1:]
)
d_moff_denominator = stage_metric_mean(
"D", "fft", "m_off", range(NUM_BLOCKS)
)
d_moff_relative_range = (
(max(d_moff_values) - min(d_moff_values)) / d_moff_denominator
if d_moff_values is not None
and d_moff_denominator is not None
and d_moff_denominator >= 1e-6
else None
)
d_order_inputs_defined = (
d_top1_values is not None and d_moff_relative_range is not None
)
d_order_specific = bool(
d_order_inputs_defined
and (
max(d_top1_values) - min(d_top1_values) > 2.0
or d_moff_relative_range > 0.20
)
)
stable_across_registered_orders = bool(
d_order_inputs_defined and not d_order_specific
)
if strong_supported:
permitted = (
"The trained gate performs input-conditioned multiplicative spectral mixing. "
"Its task value is not determined by raw high-frequency energy or total mixing "
"strength alone; it depends on sample-conditioned carrier-gate coupling and an "
"optimizable gate-gradient path. Exact channel correspondence is helpful but "
"partly adaptable."
)
else:
permitted = (
"The pre-registered strong mechanism statement is not fully supported for these "
"checkpoints; report the measured input-conditioned mixing effects with the "
"outcome-dependent limitations below."
)
narrowing: list[str] = []
if not d_order_inputs_defined:
narrowing.append(
"Stability across the two alternate registered D orders is undefined because one or "
"more registered order metrics are unavailable; no independent-gate "
"generalization is permitted."
)
elif d_order_specific:
narrowing.append(
"The derangement effect is batch/order-specific in the registered probes and "
"must not be generalized to arbitrary independent gates."
)
else:
narrowing.append(
"The derangement effect is stable across the two alternate registered orders; this "
"does not establish generalization to arbitrary independent gates."
)
if not baseline_mixing_defined:
narrowing.append(
"One or more registered B mixing denominators are undefined or below the "
"registered floor, so relative mixing claims are forbidden."
)
if not d_substantial:
narrowing.append(
"D changed both sample conditioning and total mixing magnitude, so those effects "
"cannot be separated."
)
if not c_adaptation:
narrowing.append(
"The fixed channel-permutation result does not support an adaptable channel-mismatch claim."
)
if not sc_gradient_gap:
narrowing.append(
"The strong channel-mismatch by gate-gradient interaction is not supported; retain "
"only the standalone S-versus-B result."
)
if section_11_3_joint_decline_observed:
narrowing.append(
"Raw output energy, normalized high-frequency PSD, and conditional transfer "
"decline together with D accuracy; under Section 11.3 the spectral audit is "
"correlational and does not exclude an energy or mixing-quantity explanation."
)
elif not section_11_3_inputs_defined:
narrowing.append(
"One or more Section 11.3 raw-energy, normalized-PSD, or conditional-transfer "
"inputs are undefined; the joint-decline rule cannot be adjudicated and the "
"audit must retain the correlational caveat."
)
elif not indiscriminate_exclusion:
narrowing.append(
"The spectral audit remains correlational and does not exclude an energy or total-mixing explanation."
)
if narrowing:
permitted = f"{permitted} " + " ".join(narrowing)
decision = {
"strong_mechanism_claim_supported": strong_supported,
"conditions": conditions,
"matched_total_mixing_supported": comparable,
"matched_total_mixing_details": comparable_details,
"D_order_sensitivity": {
"alternate_order_tasks": list(D_ORDER_TASKS[1:]),
"range_excludes_canonical_D": True,
"canonical_top1": finite_or_none(points["D"]["top1"]),
"top1_range": (
[min(d_top1_values), max(d_top1_values)]
if d_top1_values is not None
else [None, None]
),
"canonical_fft_m_off": d_moff_denominator,
"fft_m_off_range": (
[min(d_moff_values), max(d_moff_values)]
if d_moff_values is not None
else [None, None]
),
"fft_m_off_relative_range": d_moff_relative_range,
"fft_m_off_relative_range_defined": d_moff_relative_range is not None,
"registered_order_inputs_defined": d_order_inputs_defined,
"stable_across_registered_orders": stable_across_registered_orders,
"batch_order_specific_narrowing_required": d_order_specific,
"generalizes_to_arbitrary_independent_gates": (
ARBITRARY_INDEPENDENT_GATE_GENERALIZATION_PERMITTED
),
"top1_absolute_narrowing_threshold": 2.0,
"m_off_relative_narrowing_threshold": 0.20,
},
"stage_details": stage_details,
"fft_dct_direction_details": direction_details,
"section_11_3_correlational_caveat": {
"required": section_11_3_correlational_caveat,
"inputs_defined": section_11_3_inputs_defined,
"joint_decline_observed": section_11_3_joint_decline_observed,
"states": section_states,
"primary_basis": "fft",
"D_accuracy_declines": d_accuracy_declines,
"D_accuracy_decline_defined": d_accuracy_defined,
"raw_energy_declines": raw_energy_declines,
"raw_energy_decline_defined": raw_energy_defined,
"raw_energy_estimator": (
"block-equal mean of per-image channel-median dataset medians"
),
"raw_centered_rms_D_vs_B": {
"D": raw_energy_pair[0],
"B": raw_energy_pair[1],
},
"normalized_psd_declines": normalized_psd_declines,
"normalized_psd_decline_defined": normalized_psd_defined,
"normalized_psd_high_fraction_D_vs_B": {
"D": normalized_psd_pair[0],
"B": normalized_psd_pair[1],
},
"conditional_transfer_declines": conditional_transfer_declines,
"conditional_transfer_decline_defined": conditional_transfer_defined,
"conditional_m_off_D_vs_B": {
basis: {
"D": conditional_transfer_pairs[basis][0],
"B": conditional_transfer_pairs[basis][1],
"state": registered_decline_state(
*conditional_transfer_pairs[basis]
),
}
for basis in BASES
},
"dct_robustness": {
"normalized_psd_state": registered_decline_state(
stage_metric_mean(
"D", "dct", "psd_high_fraction", range(NUM_BLOCKS)
),
stage_metric_mean(
"B", "dct", "psd_high_fraction", range(NUM_BLOCKS)
),
),
"conditional_transfer_state": registered_decline_state(
*conditional_transfer_pairs["dct"]
),
},
},
"fft_dct_zero_direction_tolerance": direction_tolerance,
"outcome_dependent_narrowing": narrowing,
"unrestricted_strong_wording_permitted": strong_supported
and stable_across_registered_orders,
"permitted_wording": permitted,
}
return decision, points
def aggregate_accuracy_npz(self) -> dict[str, np.ndarray]:
task_count = len(TASK_ORDER)
condition_count = len(EXPECTED_CONDITIONS)
arrays: dict[str, np.ndarray] = {
"task_names": np.asarray(TASK_ORDER),
"condition_names": np.asarray(EXPECTED_CONDITIONS),
"condition_present": np.zeros((task_count, condition_count), dtype=np.bool_),
"evaluation_position": np.empty((task_count, NUM_IMAGES), dtype=np.int64),
"canonical_index": np.empty((task_count, NUM_IMAGES), dtype=np.int64),
"target": np.empty((task_count, NUM_IMAGES), dtype=np.int16),
"top1_correct": np.zeros((task_count, condition_count, NUM_IMAGES), dtype=np.bool_),
"top5_correct": np.zeros((task_count, condition_count, NUM_IMAGES), dtype=np.bool_),
"nll": np.full((task_count, condition_count, NUM_IMAGES), np.nan, dtype=np.float32),
"prediction": np.full((task_count, condition_count, NUM_IMAGES), -1, dtype=np.int16),
"confidence": np.full((task_count, condition_count, NUM_IMAGES), np.nan, dtype=np.float32),
}
for task_index, task_id in enumerate(TASK_ORDER):
task = self.tasks[task_id]
arrays["evaluation_position"][task_index] = task.accuracy["evaluation_position"]
arrays["canonical_index"][task_index] = task.accuracy["canonical_index"]
arrays["target"][task_index] = task.accuracy["target"]
task_conditions = tuple(task.accuracy["condition_names"].tolist())
for local_index, condition in enumerate(task_conditions):
condition_index = EXPECTED_CONDITIONS.index(str(condition))
arrays["condition_present"][task_index, condition_index] = True
for field in ("top1_correct", "top5_correct", "nll", "prediction", "confidence"):
arrays[field][task_index, condition_index] = task.accuracy[field][local_index]
return arrays
def aggregate_spectral_npz(self) -> dict[str, np.ndarray]:
reference = self.tasks["B"].spectral
metadata = {
"task_names": np.asarray(TASK_ORDER),
"canonical_index": reference["canonical_index"],
"class_id": reference["class_id"],
"signal_names": reference["signal_names"],
"coherence_names": reference["coherence_names"],
"block_global_index": reference["block_global_index"],
"block_stage": reference["block_stage"],
"block_within_stage": reference["block_within_stage"],
}
per_task_fields = [
name
for name in reference
if name not in {
"canonical_index",
"class_id",
"signal_names",
"coherence_names",
"block_global_index",
"block_stage",
"block_within_stage",
}
]
for field in per_task_fields:
metadata[field] = np.stack([self.tasks[task_id].spectral[field] for task_id in TASK_ORDER])
return metadata
def aggregate_transfer_npz(
self, bootstrap: dict[str, Any], transfer: dict[str, Any]
) -> dict[str, np.ndarray]:
output: dict[str, np.ndarray] = {
"task_names": np.asarray(TASK_ORDER),
"basis_names": np.asarray(BASES),
"block_global_index": np.arange(NUM_BLOCKS, dtype=np.int8),
"block_stage": np.asarray(EXPECTED_STAGES, dtype=np.int8),
"block_within_stage": np.asarray(EXPECTED_STAGE_BLOCKS, dtype=np.int8),
}
for kind in ("primary", "conditional"):
output[kind] = np.stack(
[
np.stack(
[
np.stack(
[
self.tasks[task_id].block_summary[(basis, block, "gated_product")][
f"transfer_{kind}"
]
for block in range(NUM_BLOCKS)
]
)
for basis in BASES
]
)
for task_id in TASK_ORDER
]
).astype(np.float64, copy=False)
for kind in ("valid", "suppressed"):
output[f"source_{kind}"] = np.stack(
[
np.stack(
[
np.stack(
[
self.tasks[task_id].block_summary[(basis, block, "gated_product")][
f"transfer_source_{kind}"
]
for block in range(NUM_BLOCKS)
]
)
for basis in BASES
]
)
for task_id in TASK_ORDER
]
).astype(np.int64, copy=False)
contrasts = bootstrap["contrasts_vs_B"]
contrast_tasks = tuple(task_id for task_id in TASK_ORDER if task_id in contrasts)
metric_names = tuple(contrasts[contrast_tasks[0]])
shape = (len(contrast_tasks), len(metric_names))
defined = np.zeros(shape, dtype=np.bool_)
point = np.full(shape, np.nan, dtype=np.float64)
ci90 = np.full(shape + (2,), np.nan, dtype=np.float64)
ci95 = np.full(shape + (2,), np.nan, dtype=np.float64)
for task_index, task_id in enumerate(contrast_tasks):
if tuple(contrasts[task_id]) != metric_names:
raise AssertionError("bootstrap contrast metric order changed across tasks")
for metric_index, metric in enumerate(metric_names):
row = contrasts[task_id][metric]
if row["relative_difference_defined"]:
defined[task_index, metric_index] = True
point[task_index, metric_index] = row["relative_difference_point"]
ci90[task_index, metric_index] = row["relative_difference_ci90"]
ci95[task_index, metric_index] = row["relative_difference_ci95"]
output.update(
{
"bootstrap_contrast_task_names": np.asarray(contrast_tasks),
"bootstrap_metric_names": np.asarray(metric_names),
"bootstrap_relative_difference_defined": defined,
"bootstrap_relative_difference_point": point,
"bootstrap_relative_difference_ci90": ci90,
"bootstrap_relative_difference_ci95": ci95,
"bootstrap_replicates": np.asarray(bootstrap["replicates"], dtype=np.int64),
"bootstrap_seed": np.asarray(bootstrap["seed"], dtype=np.int64),
}
)
output.update(
{
"per_block_bootstrap_task_names": transfer["task_names"],
"per_block_bootstrap_quantile_levels": transfer["quantile_levels"],
"per_block_primary_point": transfer["primary_point"],
"per_block_primary_quantiles": transfer["primary_quantiles"],
"per_block_primary_defined": transfer["primary_defined"],
"per_block_primary_defined_replicates": transfer[
"primary_defined_replicates"
],
"per_block_conditional_point": transfer["conditional_point"],
"per_block_conditional_quantiles": transfer["conditional_quantiles"],
"per_block_conditional_defined": transfer["conditional_defined"],
"per_block_conditional_defined_replicates": transfer[
"conditional_defined_replicates"
],
"per_block_scalar_names": transfer["scalar_names"],
"per_block_scalar_point": transfer["scalar_point"],
"per_block_scalar_quantiles": transfer["scalar_quantiles"],
"per_block_scalar_defined": transfer["scalar_defined"],
"per_block_scalar_defined_replicates": transfer[
"scalar_defined_replicates"
],
"global_scalar_quantiles": transfer["global_scalar_quantiles"],
}
)
return output
@staticmethod
def svg_line_chart(
title: str,
x_labels: Sequence[str],
series: Sequence[dict[str, Any]],
*,
y_label: str,
) -> bytes:
width, height = 1280, 720
left, right, top, bottom = 92.0, 34.0, 68.0, 112.0
plot_width = width - left - right
plot_height = height - top - bottom
finite_values: list[float] = []
for item in series:
for field in ("values", "low", "high"):
finite_values.extend(
float(value)
for value in item.get(field, [])
if value is not None and math.isfinite(float(value))
)
if not finite_values:
raise ValueError(f"figure {title} has no defined values")
y_min, y_max = min(finite_values), max(finite_values)
padding = max((y_max - y_min) * 0.08, max(abs(y_min), abs(y_max), 1.0) * 0.01)
y_min -= padding
y_max += padding
colors = ("#1b5e8a", "#c43c35", "#18875b", "#7b4a9e", "#d47b16", "#52606d")
def sx(index: int) -> float:
return left + (plot_width * index / max(1, len(x_labels) - 1))
def sy(value: float) -> float:
return top + (y_max - value) * plot_height / (y_max - y_min)
parts = [
'<?xml version="1.0" encoding="UTF-8"?>',
f'<svg xmlns="http://www.w3.org/2000/svg" width="{width}" height="{height}" viewBox="0 0 {width} {height}">',
'<rect width="100%" height="100%" fill="#ffffff"/>',
f'<text x="{width / 2:.1f}" y="34" text-anchor="middle" font-family="sans-serif" font-size="22" fill="#17212b">{html.escape(title)}</text>',
f'<line x1="{left}" y1="{top}" x2="{left}" y2="{top + plot_height}" stroke="#263238"/>',
f'<line x1="{left}" y1="{top + plot_height}" x2="{left + plot_width}" y2="{top + plot_height}" stroke="#263238"/>',
f'<text x="20" y="{top + plot_height / 2:.1f}" transform="rotate(-90 20 {top + plot_height / 2:.1f})" text-anchor="middle" font-family="sans-serif" font-size="14">{html.escape(y_label)}</text>',
]
for tick in range(6):
value = y_min + (y_max - y_min) * tick / 5
y = sy(value)
parts.extend(
[
f'<line x1="{left}" y1="{y:.2f}" x2="{left + plot_width}" y2="{y:.2f}" stroke="#d9e0e5"/>',
f'<text x="{left - 8:.1f}" y="{y + 4:.2f}" text-anchor="end" font-family="monospace" font-size="11">{value:.4g}</text>',
]
)
for index, label in enumerate(x_labels):
x = sx(index)
parts.append(
f'<text x="{x:.2f}" y="{top + plot_height + 22:.2f}" text-anchor="end" transform="rotate(-40 {x:.2f} {top + plot_height + 22:.2f})" font-family="sans-serif" font-size="10">{html.escape(str(label))}</text>'
)
for series_index, item in enumerate(series):
color = colors[series_index % len(colors)]
values = item["values"]
low = item.get("low", values)
high = item.get("high", values)
segments: list[list[str]] = []
current: list[str] = []
for index, value in enumerate(values):
if value is None or not math.isfinite(float(value)):
if current:
segments.append(current)
current = []
continue
x, y = sx(index), sy(float(value))
current.append(f"{x:.2f},{y:.2f}")
lo = low[index] if index < len(low) else value
hi = high[index] if index < len(high) else value
if lo is not None and hi is not None and math.isfinite(float(lo)) and math.isfinite(float(hi)):
parts.append(
f'<line x1="{x:.2f}" y1="{sy(float(lo)):.2f}" x2="{x:.2f}" y2="{sy(float(hi)):.2f}" stroke="{color}" stroke-width="1"/>'
)
parts.append(
f'<circle cx="{x:.2f}" cy="{y:.2f}" r="2.7" fill="{color}"/>'
)
if current:
segments.append(current)
for segment in segments:
if len(segment) >= 2:
parts.append(
f'<polyline points="{" ".join(segment)}" fill="none" stroke="{color}" stroke-width="2"/>'
)
legend_x = left + (series_index % 4) * 270
legend_y = height - 30 - (series_index // 4) * 22
parts.extend(
[
f'<line x1="{legend_x:.1f}" y1="{legend_y:.1f}" x2="{legend_x + 24:.1f}" y2="{legend_y:.1f}" stroke="{color}" stroke-width="3"/>',
f'<text x="{legend_x + 30:.1f}" y="{legend_y + 4:.1f}" font-family="sans-serif" font-size="12">{html.escape(str(item["name"]))}</text>',
]
)
parts.append("</svg>\n")
return "\n".join(parts).encode("utf-8")
def build_figures(
self,
accuracy_bootstrap: dict[str, Any],
statistics: dict[str, Any],
transfer: dict[str, Any],
raw_amplitude: list[dict[str, Any]],
points: dict[str, dict[str, float | None]],
d_order_rows: Sequence[dict[str, Any]],
) -> dict[str, bytes]:
accuracy_map = {
(row["task_id"], row["condition"], row["metric"]): row
for row in accuracy_bootstrap["series_summaries"]
}
accuracy_series = []
for task_id in CANONICAL_ARMS:
rows = [accuracy_map[(task_id, condition, "top1")] for condition in EXPECTED_CONDITIONS]
accuracy_series.append(
{
"name": task_id,
"values": [row["point"] for row in rows],
"low": [row["bootstrap_ci95_low"] for row in rows],
"high": [row["bootstrap_ci95_high"] for row in rows],
}
)
d_top1_alternates = finite_values(
points[task_id]["top1"] for task_id in D_ORDER_TASKS[1:]
)
accuracy_series.append(
{
"name": "D registered-order range (unfiltered; low-pass NA)",
"values": [points["D"]["top1"], None, None, None, None],
"low": [
min(d_top1_alternates) if d_top1_alternates is not None else None,
None,
None,
None,
None,
],
"high": [
max(d_top1_alternates) if d_top1_alternates is not None else None,
None,
None,
None,
None,
],
}
)
figures = {
"figures/accuracy_lowpass.svg": self.svg_line_chart(
"ImageNet Top-1 under registered low-pass conditions",
EXPECTED_CONDITIONS,
accuracy_series,
y_label="Top-1 (%) with receiver-bootstrap 95% CI",
)
}
operator_index = {
name: index for index, name in enumerate(statistics["operator_metric_names"])
}
d_order_lookup = {
(row["basis"], row["global_block_index"]): row for row in d_order_rows
}
mixing_series: list[dict[str, Any]] = []
for task_index, task_id in enumerate(CANONICAL_ARMS):
for metric in ("m_off", "m_res"):
index = operator_index[metric]
quantiles = statistics["operator_quantiles"][task_index, 0, :, index]
mixing_series.append(
{
"name": f"{task_id} {metric}",
"values": statistics["operator_point"][task_index, 0, :, index].tolist(),
"low": quantiles[:, 0].tolist(),
"high": quantiles[:, 2].tolist(),
}
)
for metric in ("m_off", "m_res"):
rows = [d_order_lookup[("fft", block)] for block in range(NUM_BLOCKS)]
mixing_series.append(
{
"name": f"D registered-order envelope {metric}",
"values": [row[f"{metric}_D"] for row in rows],
"low": [row[f"{metric}_alternate_min"] for row in rows],
"high": [row[f"{metric}_alternate_max"] for row in rows],
}
)
figures["figures/mixing_depth_profile.svg"] = self.svg_line_chart(
"FFT scale-free mixing across all 17 blocks",
[f"b{index + 1}" for index in range(NUM_BLOCKS)],
mixing_series,
y_label="M_off / M_res (95% CI)",
)
normalized_index = {
name: index for index, name in enumerate(statistics["normalized_metric_names"])
}
signal_index = {
name: index for index, name in enumerate(statistics["signal_names"])
}
spectral_labels = [
f"S{stage}:{ROOT_SIGNAL_PREFIXES[signal]}"
for stage in range(1, 5)
for signal in ROOT_SIGNAL_PREFIXES
]
spectral_series = []
metric_index = normalized_index["psd_high_fraction"]
for task_index, task_id in enumerate(CANONICAL_ARMS):
values: list[float | None] = []
lows: list[float | None] = []
highs: list[float | None] = []
for stage in range(1, 5):
block_indices = [
index for index, value in enumerate(EXPECTED_STAGES) if value == stage
]
for signal in ROOT_SIGNAL_PREFIXES:
block_values = statistics["normalized_point"][
task_index, 0, block_indices, signal_index[signal], metric_index
]
values.append(finite_or_none(np.nanmean(block_values)))
quantile = statistics["normalized_stage_quantiles"][
task_index, 0, stage - 1, signal_index[signal], metric_index
]
lows.append(finite_or_none(quantile[0]))
highs.append(finite_or_none(quantile[2]))
spectral_series.append(
{"name": task_id, "values": values, "low": lows, "high": highs}
)
d_values: list[float | None] = []
d_lows: list[float | None] = []
d_highs: list[float | None] = []
for stage in range(1, 5):
stage_blocks = [
index for index, value in enumerate(EXPECTED_STAGES) if value == stage
]
for signal, prefix in ROOT_SIGNAL_PREFIXES.items():
task_means: list[float | None] = []
for task_id in D_ORDER_TASKS:
values = finite_values(
d_order_lookup[("fft", block)].get(
f"{prefix}_psd_high_fraction_{task_id}"
)
for block in stage_blocks
)
task_means.append(
float(np.mean(np.asarray(values), dtype=np.float64))
if values is not None
else None
)
defined = [value for value in task_means if value is not None]
d_values.append(task_means[0])
alternate = [value for value in task_means[1:] if value is not None]
d_lows.append(min(alternate) if len(alternate) == 2 else None)
d_highs.append(max(alternate) if len(alternate) == 2 else None)
spectral_series.append(
{
"name": "D registered-order envelope",
"values": d_values,
"low": d_lows,
"high": d_highs,
}
)
figures["figures/spectral_stage_profile.svg"] = self.svg_line_chart(
"Four-stage FFT normalized high-frequency profile for x, q, and y",
spectral_labels,
spectral_series,
y_label="High-frequency fraction (95% CI)",
)
rho_index = operator_index["rho_used"]
coherence_series = []
for task_index, task_id in enumerate(CANONICAL_ARMS):
quantiles = statistics["operator_quantiles"][task_index, 0, :, rho_index]
coherence_series.append(
{
"name": task_id,
"values": statistics["operator_point"][task_index, 0, :, rho_index].tolist(),
"low": quantiles[:, 0].tolist(),
"high": quantiles[:, 2].tolist(),
}
)
coherence_series.append(
{
"name": "D registered-order envelope",
"values": [
d_order_lookup[("fft", block)]["rho_used_D"]
for block in range(NUM_BLOCKS)
],
"low": [
d_order_lookup[("fft", block)]["rho_used_alternate_min"]
for block in range(NUM_BLOCKS)
],
"high": [
d_order_lookup[("fft", block)]["rho_used_alternate_max"]
for block in range(NUM_BLOCKS)
],
}
)
figures["figures/coherence_depth_profile.svg"] = self.svg_line_chart(
"Carrier to used-gate coherence across depth",
[f"b{index + 1}" for index in range(NUM_BLOCKS)],
coherence_series,
y_label="rho_used class-equal mean (95% CI)",
)
figures["figures/transfer_heatmaps.svg"] = self.transfer_heatmap_svg(
transfer, d_order_rows
)
figures["figures/accuracy_mixing_raw.svg"] = self.accuracy_mixing_svg(
accuracy_map, transfer, raw_amplitude, points, d_order_rows
)
return figures
@staticmethod
def transfer_heatmap_svg(
transfer: dict[str, Any], d_order_rows: Sequence[dict[str, Any]]
) -> bytes:
width, height = 1560, 1120
cell = 52
block = 8
tasks = ("B", "D", "C")
panels = [
(task, basis, kind)
for task in tasks
for basis in BASES
for kind in ("primary", "conditional")
]
parts = [
'<?xml version="1.0" encoding="UTF-8"?>',
f'<svg xmlns="http://www.w3.org/2000/svg" width="{width}" height="{height}" viewBox="0 0 {width} {height}">',
'<rect width="100%" height="100%" fill="#ffffff"/>',
'<text x="780" y="34" text-anchor="middle" font-family="sans-serif" font-size="22">Block-9 transfer: canonical point; D shows registered-order range</text>',
]
task_index = {task: index for index, task in enumerate(CANONICAL_ARMS)}
d_order_lookup = {
(row["basis"], row["global_block_index"]): row for row in d_order_rows
}
def compact(value: Any) -> str:
number = finite_or_none(value)
return f"{number:.3f}" if number is not None else "NA"
for panel_index, (task, basis, kind) in enumerate(panels):
column = panel_index % 4
row = panel_index // 4
x0 = 45 + column * 380
y0 = 86 + row * 330
basis_index = BASES.index(basis)
point = transfer[f"{kind}_point"][task_index[task], basis_index, block]
quantile = transfer[f"{kind}_quantiles"][task_index[task], basis_index, block]
parts.append(
f'<text x="{x0 + 2 * cell}" y="{y0 - 15}" text-anchor="middle" font-family="sans-serif" font-size="15">{task} {basis.upper()} {kind}</text>'
)
for source in range(NUM_BANDS):
for target in range(NUM_BANDS):
value = point[source, target]
defined = math.isfinite(float(value))
shade = int(round(248 - 150 * min(max(float(value), 0.0), 1.0))) if defined else 235
fill = f"rgb({shade},{min(250, shade + 18)},{min(255, shade + 35)})"
x = x0 + target * cell
y = y0 + source * cell
parts.append(
f'<rect x="{x}" y="{y}" width="{cell}" height="{cell}" fill="{fill}" stroke="#52606d"/>'
)
if defined:
bootstrap_lo = quantile[source, target, 0]
bootstrap_hi = quantile[source, target, 2]
if task == "D":
metric = f"transfer_{kind}_s{source}_t{target}"
range_row = d_order_lookup[(basis, block)]
order_lo = range_row[f"{metric}_alternate_min"]
order_hi = range_row[f"{metric}_alternate_max"]
labels = [
f'<text x="{x + cell / 2:.1f}" y="{y + 15}" text-anchor="middle" font-family="monospace" font-size="9">{value:.3f}</text>',
f'<text x="{x + cell / 2:.1f}" y="{y + 29}" text-anchor="middle" font-family="monospace" font-size="6">CI {bootstrap_lo:.3f},{bootstrap_hi:.3f}</text>',
f'<text x="{x + cell / 2:.1f}" y="{y + 42}" text-anchor="middle" font-family="monospace" font-size="6">alt {compact(order_lo)},{compact(order_hi)}</text>',
]
else:
labels = [
f'<text x="{x + cell / 2:.1f}" y="{y + 21}" text-anchor="middle" font-family="monospace" font-size="10">{value:.3f}</text>',
f'<text x="{x + cell / 2:.1f}" y="{y + 38}" text-anchor="middle" font-family="monospace" font-size="7">CI {bootstrap_lo:.3f},{bootstrap_hi:.3f}</text>',
]
parts.extend(labels)
else:
if task == "D":
metric = f"transfer_{kind}_s{source}_t{target}"
range_row = d_order_lookup[(basis, block)]
parts.extend(
[
f'<text x="{x + cell / 2:.1f}" y="{y + 15}" text-anchor="middle" font-family="monospace" font-size="8">canonical NA</text>',
f'<text x="{x + cell / 2:.1f}" y="{y + 29}" text-anchor="middle" font-family="monospace" font-size="6">CI NA</text>',
f'<text x="{x + cell / 2:.1f}" y="{y + 42}" text-anchor="middle" font-family="monospace" font-size="6">alt {compact(range_row[f"{metric}_alternate_min"])},{compact(range_row[f"{metric}_alternate_max"])}</text>',
]
)
else:
parts.append(
f'<text x="{x + cell / 2:.1f}" y="{y + 30}" text-anchor="middle" font-family="sans-serif" font-size="9">undefined</text>'
)
parts.append(
f'<text x="{x0 + 2 * cell}" y="{y0 + 4 * cell + 20}" text-anchor="middle" font-family="sans-serif" font-size="10">target band 0..3; rows are source bands</text>'
)
parts.append("</svg>\n")
return "\n".join(parts).encode("utf-8")
@staticmethod
def accuracy_mixing_svg(
accuracy_map: Mapping[tuple[str, str, str], dict[str, Any]],
transfer: dict[str, Any],
raw_amplitude: Sequence[dict[str, Any]],
points: Mapping[str, Mapping[str, float | None]],
d_order_rows: Sequence[dict[str, Any]],
) -> bytes:
width, height = 1120, 720
left, top, plot_width, plot_height = 100.0, 72.0, 900.0, 530.0
scalar_names = tuple(str(item) for item in transfer["scalar_names"].tolist())
m_off_index = scalar_names.index("m_off")
xs = [float(points[task]["fft_m_off"]) for task in CANONICAL_ARMS]
ys = [float(points[task]["top1"]) for task in CANONICAL_ARMS]
x_quantiles = transfer["global_scalar_quantiles"][:, 0, m_off_index]
y_rows = [accuracy_map[(task, "unfiltered", "top1")] for task in CANONICAL_ARMS]
x_min = min(float(x_quantiles[:, 0].min()), min(xs))
x_max = max(float(x_quantiles[:, 2].max()), max(xs))
y_min = min(row["bootstrap_ci95_low"] for row in y_rows)
y_max = max(row["bootstrap_ci95_high"] for row in y_rows)
x_pad = max((x_max - x_min) * 0.12, 1e-4)
y_pad = max((y_max - y_min) * 0.12, 0.5)
x_min, x_max = x_min - x_pad, x_max + x_pad
y_min, y_max = y_min - y_pad, y_max + y_pad
d_fft_rows = sorted(
(row for row in d_order_rows if row["basis"] == "fft"),
key=lambda row: row["global_block_index"],
)
d_global_x = {
task_id: float(
np.mean(
np.asarray([row[f"m_off_{task_id}"] for row in d_fft_rows]),
dtype=np.float64,
)
)
for task_id in D_ORDER_TASKS
}
d_x_alternates = [d_global_x[task_id] for task_id in D_ORDER_TASKS[1:]]
d_x_low, d_x_high = min(d_x_alternates), max(d_x_alternates)
d_y_values = [float(points[task_id]["top1"]) for task_id in D_ORDER_TASKS[1:]]
d_y_low, d_y_high = min(d_y_values), max(d_y_values)
d_raw = {
task_id: float(
np.mean(
np.asarray(
[
row[f"raw_y_centered_rms_dataset_median_{task_id}"]
for row in d_fft_rows
]
),
dtype=np.float64,
)
)
for task_id in D_ORDER_TASKS
}
d_raw_alternates = [d_raw[task_id] for task_id in D_ORDER_TASKS[1:]]
d_raw_low, d_raw_high = min(d_raw_alternates), max(d_raw_alternates)
x_min, x_max = min(x_min, d_x_low - x_pad), max(x_max, d_x_high + x_pad)
y_min, y_max = min(y_min, d_y_low - y_pad), max(y_max, d_y_high + y_pad)
def sx(value: float) -> float:
return left + (value - x_min) * plot_width / (x_max - x_min)
def sy(value: float) -> float:
return top + (y_max - value) * plot_height / (y_max - y_min)
raw_lookup: dict[str, float | None] = {}
for task in CANONICAL_ARMS:
values = [
row["dataset_median"]
for row in raw_amplitude
if row["task_id"] == task
and row["signal"] == "gated_product"
and row["metric"] == "centered_rms"
and row["dataset_median"] is not None
]
raw_lookup[task] = float(np.mean(values, dtype=np.float64)) if values else None
colors = ("#1b5e8a", "#c43c35", "#18875b", "#7b4a9e", "#d47b16")
parts = [
'<?xml version="1.0" encoding="UTF-8"?>',
f'<svg xmlns="http://www.w3.org/2000/svg" width="{width}" height="{height}" viewBox="0 0 {width} {height}">',
'<rect width="100%" height="100%" fill="#ffffff"/>',
'<text x="560" y="34" text-anchor="middle" font-family="sans-serif" font-size="22">Accuracy, scale-free mixing, and raw output energy</text>',
f'<line x1="{left}" y1="{top}" x2="{left}" y2="{top + plot_height}" stroke="#263238"/>',
f'<line x1="{left}" y1="{top + plot_height}" x2="{left + plot_width}" y2="{top + plot_height}" stroke="#263238"/>',
f'<text x="{left + plot_width / 2}" y="680" text-anchor="middle" font-family="sans-serif" font-size="14">Global FFT M_off (95% CI)</text>',
f'<text x="24" y="{top + plot_height / 2}" transform="rotate(-90 24 {top + plot_height / 2})" text-anchor="middle" font-family="sans-serif" font-size="14">ImageNet Top-1 % (95% CI)</text>',
f'<rect x="{sx(d_x_low):.2f}" y="{sy(d_y_high):.2f}" width="{sx(d_x_high) - sx(d_x_low):.2f}" height="{sy(d_y_low) - sy(d_y_high):.2f}" fill="none" stroke="#8b1e3f" stroke-width="2" stroke-dasharray="7,4"/>',
f'<text x="{sx(d_x_low):.2f}" y="{sy(d_y_high) - 8:.2f}" font-family="sans-serif" font-size="11" fill="#8b1e3f">D registered-order x/y range</text>',
f'<text x="{left + plot_width - 4:.1f}" y="{top + 18:.1f}" text-anchor="end" font-family="sans-serif" font-size="11" fill="#8b1e3f">D raw y RMS alternate-order range [{d_raw_low:.4g}, {d_raw_high:.4g}]</text>',
]
for index, task in enumerate(CANONICAL_ARMS):
x, y = xs[index], ys[index]
xlo, _, xhi = x_quantiles[index]
ylo, yhi = y_rows[index]["bootstrap_ci95_low"], y_rows[index]["bootstrap_ci95_high"]
color = colors[index]
parts.extend(
[
f'<line x1="{sx(float(xlo)):.2f}" y1="{sy(y):.2f}" x2="{sx(float(xhi)):.2f}" y2="{sy(y):.2f}" stroke="{color}"/>',
f'<line x1="{sx(x):.2f}" y1="{sy(float(ylo)):.2f}" x2="{sx(x):.2f}" y2="{sy(float(yhi)):.2f}" stroke="{color}"/>',
f'<circle cx="{sx(x):.2f}" cy="{sy(y):.2f}" r="6" fill="{color}"/>',
f'<text x="{sx(x) + 8:.2f}" y="{sy(y) - 8:.2f}" font-family="sans-serif" font-size="12">{task}; median y RMS={raw_lookup[task]:.4g}</text>',
]
)
parts.append("</svg>\n")
return "\n".join(parts).encode("utf-8")
def root_report(
self,
points: dict[str, dict[str, float | None]],
decision: dict[str, Any],
accuracy_rows: list[dict[str, Any]],
accuracy_bootstrap: dict[str, Any],
spectral_rows: list[dict[str, Any]],
stage_rows: list[dict[str, Any]],
coherence_rows: list[dict[str, Any]],
raw_amplitude_rows: list[dict[str, Any]],
d_order_rows: Sequence[dict[str, Any]],
) -> bytes:
def fmt(value: Any, digits: int = 4) -> str:
if value is None:
return "undefined"
number = float(value)
return f"{number:.{digits}f}" if math.isfinite(number) else "undefined"
accuracy_ci = {
(row["task_id"], row["condition"], row["metric"]): row
for row in accuracy_bootstrap["series_summaries"]
}
spectral_by_key = {
(row["task_id"], row["basis"], row["global_block_index"]): row
for row in spectral_rows
}
stage_by_key = {
(row["task_id"], row["basis"], row["stage"], row["signal"]): row
for row in stage_rows
}
d_order_by_key = {
(row["basis"], row["global_block_index"]): row
for row in d_order_rows
}
lines = [
"# Matched ImageNet Spectral Audit Report",
"",
f"Protocol: `{PROTOCOL_ID}`",
"",
"All eight registered tasks passed the mechanical cross-task validator. This is a "
"single-training-seed descriptive audit; receiver-bootstrap intervals describe "
"validation-set sampling and not training-run uncertainty.",
"The B/B_order1 control passed a stronger row-level invariance check after canonical "
"receiver alignment across accuracy and every spectral NPZ array; this directly "
"covers raw median/IQR, gate, coherence, and transfer aggregates.",
"",
"## Required figures",
"",
"![Accuracy low-pass profile](figures/accuracy_lowpass.svg)",
"",
"![Mixing depth profile](figures/mixing_depth_profile.svg)",
"",
"![Spectral stage profile](figures/spectral_stage_profile.svg)",
"",
"![Coherence depth profile](figures/coherence_depth_profile.svg)",
"",
"![Representative transfer heatmaps](figures/transfer_heatmaps.svg)",
"",
"![Accuracy, mixing, and raw energy](figures/accuracy_mixing_raw.svg)",
"",
"## Five-arm clean and low-pass accuracy",
"",
"| Arm | Condition | Top-1 count | Top-1 [95% CI] | Top-5 count | Top-5 | NLL | ECE |",
"|---|---|---:|---:|---:|---:|---:|---:|",
]
for row in accuracy_rows:
ci = accuracy_ci[(row["task_id"], row["condition"], "top1")]
lines.append(
f"| {row['task_id']} | {row['condition']} | {row['top1_correct']} | "
f"{fmt(row['top1'], 3)} [{fmt(ci['bootstrap_ci95_low'], 3)}, "
f"{fmt(ci['bootstrap_ci95_high'], 3)}] | {row['top5_correct']} | "
f"{fmt(row['top5'], 3)} | {fmt(row['nll'])} | {fmt(row['ece'])} |"
)
lines.extend(
[
"",
"All 50,000 images contribute to every point. The exact shared, class-stratified "
"paired contrast intervals are in `accuracy_bootstrap.csv`.",
LOWPASS_CAUSAL_CAVEAT,
"",
"## Accuracy and global-depth mixing",
"",
"| Task | Top-1 | FFT M_off | FFT M_res | DCT M_off | DCT M_res |",
"|---|---:|---:|---:|---:|---:|",
]
)
for task_id in TASK_ORDER:
row = points[task_id]
lines.append(
f"| {task_id} | {fmt(row['top1'], 3)} | {fmt(row['fft_m_off'], 6)} | "
f"{fmt(row['fft_m_res'], 6)} | {fmt(row['dct_m_off'], 6)} | "
f"{fmt(row['dct_m_res'], 6)} |"
)
lines.extend(
[
"",
"## Seventeen-block FFT M_off and M_res profile",
"",
"| Arm | Block | Stage | M_off [95% CI] | M_res [95% CI] | Suppressed | Constant q |",
"|---|---:|---:|---:|---:|---:|---:|",
]
)
for task_id in CANONICAL_ARMS:
for block in range(NUM_BLOCKS):
row = spectral_by_key[(task_id, "fft", block)]
lines.append(
f"| {task_id} | {block + 1} | {row['stage']} | {fmt(row['m_off'], 5)} "
f"[{fmt(row['m_off_ci95_low'], 5)}, {fmt(row['m_off_ci95_high'], 5)}] | "
f"{fmt(row['m_res'], 5)} [{fmt(row['m_res_ci95_low'], 5)}, "
f"{fmt(row['m_res_ci95_high'], 5)}] | {fmt(row['suppressed_fraction'], 5)} | "
f"{fmt(row['constant_gate_fraction'], 5)} |"
)
lines.extend(
[
"",
"## D registered-order ranges by block",
"",
"Each entry reports the D canonical value followed by the range across the two "
"alternate registered orders (D_order1 and D_order2). "
"`d_order_sensitivity_by_block.csv` contains every normalized x/q/y point, "
"raw-amplitude and gate field, coherence/JSD/paired-delta/operator metric, "
"source-valid/suppressed quantity, and every primary/conditional transfer cell.",
"In that table, `raw_*_dataset_median/q25/q75` are the registered per-image "
"channel-median raw estimators; the unsuffixed wide RMS fields remain the "
"separately labeled image-equal aggregate means.",
"",
"| Block | Stage | FFT M_off: D; alt range | FFT M_res: D; alt range | conditional M_res: D; alt range | y HF: D; alt range | raw y RMS median: D; alt range | rho_used: D; alt range | source-suppressed: D; alt range |",
"|---:|---:|---:|---:|---:|---:|---:|---:|---:|",
]
)
for block in range(NUM_BLOCKS):
row = d_order_by_key[("fft", block)]
lines.append(
f"| {block + 1} | {row['stage']} | "
f"{fmt(row['m_off_D'], 6)}; [{fmt(row['m_off_alternate_min'], 6)}, {fmt(row['m_off_alternate_max'], 6)}] | "
f"{fmt(row['m_res_D'], 6)}; [{fmt(row['m_res_alternate_min'], 6)}, {fmt(row['m_res_alternate_max'], 6)}] | "
f"{fmt(row['m_res_conditional_D'], 6)}; [{fmt(row['m_res_conditional_alternate_min'], 6)}, {fmt(row['m_res_conditional_alternate_max'], 6)}] | "
f"{fmt(row['y_psd_high_fraction_D'], 6)}; [{fmt(row['y_psd_high_fraction_alternate_min'], 6)}, {fmt(row['y_psd_high_fraction_alternate_max'], 6)}] | "
f"{fmt(row['raw_y_centered_rms_dataset_median_D'], 6)}; [{fmt(row['raw_y_centered_rms_dataset_median_alternate_min'], 6)}, {fmt(row['raw_y_centered_rms_dataset_median_alternate_max'], 6)}] | "
f"{fmt(row['rho_used_D'], 6)}; [{fmt(row['rho_used_alternate_min'], 6)}, {fmt(row['rho_used_alternate_max'], 6)}] | "
f"{fmt(row['source_suppressed_fraction_D'], 6)}; "
f"[{fmt(row['source_suppressed_fraction_alternate_min'], 6)}, "
f"{fmt(row['source_suppressed_fraction_alternate_max'], 6)}] |"
)
lines.extend(
[
"",
"## Four-stage carrier, gate, and output spectral profile",
"",
"| Arm | Signal | Stage | FFT HF mean [block min,max] (95% CI) | FFT centroid mean [block min,max] |",
"|---|---|---:|---:|---:|",
]
)
for task_id in CANONICAL_ARMS:
for signal in ROOT_SIGNAL_PREFIXES:
for stage in range(1, 5):
row = stage_by_key[(task_id, "fft", stage, signal)]
lines.append(
f"| {task_id} | {signal} | {stage} | "
f"{fmt(row['psd_high_fraction_mean'], 5)} "
f"[{fmt(row['psd_high_fraction_block_min'], 5)}, "
f"{fmt(row['psd_high_fraction_block_max'], 5)}] "
f"([{fmt(row['psd_high_fraction_ci95_low'], 5)}, "
f"{fmt(row['psd_high_fraction_ci95_high'], 5)}]) | "
f"{fmt(row['psd_centroid_mean'], 5)} "
f"[{fmt(row['psd_centroid_block_min'], 5)}, "
f"{fmt(row['psd_centroid_block_max'], 5)}] |"
)
lines.extend(
[
"",
"## rho_used depth profile",
"",
"| Arm | Block | Stage | Class-equal mean | Receiver q05/q50/q95 | Valid/invalid channels |",
"|---|---:|---:|---:|---:|---:|",
]
)
for row in coherence_rows:
if row["task_id"] in CANONICAL_ARMS and row["coherence"] == "rho_used":
lines.append(
f"| {row['task_id']} | {row['global_block_index'] + 1} | {row['stage']} | "
f"{fmt(row['class_equal_mean'], 6)} | {fmt(row['receiver_mean_q05'], 5)} / "
f"{fmt(row['receiver_mean_q50'], 5)} / {fmt(row['receiver_mean_q95'], 5)} | "
f"{row['valid_channels']}/{row['invalid_channels']} |"
)
raw_lookup: dict[str, float | None] = {}
for task_id in CANONICAL_ARMS:
values = [
row["dataset_median"]
for row in raw_amplitude_rows
if row["task_id"] == task_id
and row["signal"] == "gated_product"
and row["metric"] == "centered_rms"
and row["dataset_median"] is not None
]
raw_lookup[task_id] = float(np.mean(values, dtype=np.float64)) if values else None
lines.extend(
[
"",
"## Accuracy, mixing, and raw output energy",
"",
"| Arm | Top-1 | Loss from B | FFT M_off | FFT M_res | Median y centered RMS, block mean |",
"|---|---:|---:|---:|---:|---:|",
]
)
for task_id in CANONICAL_ARMS:
loss = float(points["B"]["top1"] - points[task_id]["top1"])
lines.append(
f"| {task_id} | {fmt(points[task_id]['top1'], 3)} | {fmt(loss, 3)} | "
f"{fmt(points[task_id]['fft_m_off'], 6)} | {fmt(points[task_id]['fft_m_res'], 6)} | "
f"{fmt(raw_lookup[task_id], 6)} |"
)
sensitivity = decision["D_order_sensitivity"]
correlational = decision["section_11_3_correlational_caveat"]
lines.extend(
[
"",
"## Representative transfer heatmaps and uncertainty",
"",
"The transfer figure contains primary and conditional 4x4 FFT/DCT matrices at "
"block 9 for B, D, and C. Every cell prints its point and 95% interval. All "
"canonical arm/basis/block cells and M_off/M_disp/M_res summaries are in "
"`transfer_bootstrap_by_block.csv` and `transfer_matrices.npz`.",
"",
"## D order-sensitivity range",
"",
f"Canonical D Top-1: {fmt(sensitivity['canonical_top1'], 3)}; alternate-order "
f"range: {fmt(sensitivity['top1_range'][0], 3)} to "
f"{fmt(sensitivity['top1_range'][1], 3)}. Canonical D FFT M_off: "
f"{fmt(sensitivity['canonical_fft_m_off'], 6)}; alternate-order range: "
f"{fmt(sensitivity['fft_m_off_range'][0], 6)} to "
f"{fmt(sensitivity['fft_m_off_range'][1], 6)}; relative range "
f"{fmt(sensitivity['fft_m_off_relative_range'], 4)}.",
"",
f"Batch/order-specific narrowing required: "
f"**{str(sensitivity['batch_order_specific_narrowing_required']).lower()}**. "
f"Stable across registered orders: "
f"**{str(sensitivity['stable_across_registered_orders']).lower()}**. "
f"Generalizes to arbitrary independent gates: "
f"**{str(sensitivity['generalizes_to_arbitrary_independent_gates']).lower()}**.",
"",
f"Section 11.3 joint-decline correlational caveat required: "
f"**{str(correlational['required']).lower()}** "
f"(inputs defined={str(correlational['inputs_defined']).lower()}, "
f"joint decline observed={str(correlational['joint_decline_observed']).lower()}, "
f"accuracy={str(correlational['D_accuracy_declines']).lower()}, "
f"raw={str(correlational['raw_energy_declines']).lower()}, "
f"normalized PSD={str(correlational['normalized_psd_declines']).lower()}, "
f"conditional transfer={str(correlational['conditional_transfer_declines']).lower()}).",
f"Section 11.3 primary basis: FFT. DCT robustness states: normalized PSD="
f"{correlational['dct_robustness']['normalized_psd_state']}, conditional transfer="
f"{correlational['dct_robustness']['conditional_transfer_state']}.",
"When required, the audit is correlational and does not exclude an energy or "
"mixing-quantity explanation, even if a separate practical-equivalence test passes.",
"",
"## Failure and validity disclosures",
"",
]
)
undefined = sum(
not bool(row[f"{metric}_defined"])
for row in spectral_rows
for metric in ROOT_OPERATOR_METRICS
)
lines.extend(
[
f"- Undefined canonical operator block cells: `{undefined}`. Undefined constant "
"or suppressed states remain blank with explicit counts; they are never imputed "
"as numeric zero evidence.",
"- `raw_amplitude_by_block.csv` and `gate_operating_diagnostics.csv` contain "
"receiver channel-median dataset median/IQR/bootstrap intervals.",
"- The wide block table reports conditional M_res, constant q, source-valid and "
"source-suppressed fractions, JSD-valid counts, and paired output-delta counts.",
"- Clipping is not adjudicated here. Clip crossing is an operating diagnostic, "
"not evidence that clipping uniquely improves ImageNet accuracy.",
"",
"## Registered decision",
"",
f"Strong mechanism statement supported: "
f"**{str(decision['strong_mechanism_claim_supported']).lower()}**.",
"",
]
)
for key, value in decision["conditions"].items():
lines.append(f"- `{key}`: `{str(bool(value)).lower()}`")
lines.extend(
[
"",
decision["permitted_wording"],
"",
"Order probes are isolated in `order_probe_accuracy.csv` and "
"`order_probe_spectral_by_block.csv`; they are never averaged into canonical results.",
"",
]
)
return "\n".join(lines).encode("utf-8")
def deterministic_finished_time(self) -> str:
candidates: list[str] = []
for task in self.tasks.values():
value = task.results.get("timestamps", {}).get("finished_at_utc")
if isinstance(value, str):
candidates.append(value)
if len(candidates) != len(TASK_ORDER):
raise ValueError("task timestamps.finished_at_utc is missing")
return max(candidates)
@staticmethod
def package_lock_payload() -> dict[str, Any]:
rows: list[dict[str, str]] = []
for distribution in importlib.metadata.distributions():
name = distribution.metadata.get("Name")
if not name:
continue
rows.append({"name": str(name), "version": str(distribution.version)})
rows.sort(key=lambda row: (row["name"].casefold(), row["name"], row["version"]))
content = stable_json(rows)
return {
"format": "sorted importlib.metadata distributions",
"distributions": rows,
"sha256": bytes_sha256(content),
}
@staticmethod
def array_schema(
arrays: Mapping[str, np.ndarray], *, family: str
) -> dict[str, dict[str, Any]]:
schema: dict[str, dict[str, Any]] = {}
for name, array in arrays.items():
if family == "accuracy":
if name == "task_names":
axes = ["task"]
elif name == "condition_names":
axes = ["condition"]
elif name == "condition_present":
axes = ["task", "condition"]
elif name in {"evaluation_position", "canonical_index", "target"}:
axes = ["task", "receiver"]
else:
axes = ["task", "condition", "receiver"]
else:
if name == "task_names":
axes = ["task"]
elif name in {"canonical_index", "class_id"}:
axes = ["receiver"]
elif name == "signal_names":
axes = ["signal"]
elif name == "coherence_names":
axes = ["coherence"]
elif name.startswith("block_"):
axes = ["block"]
elif "transfer_primary" in name or "transfer_conditional" in name:
axes = ["task", "receiver", "block", "source_band", "target_band"]
elif "transfer_source" in name:
axes = ["task", "receiver", "block", "source_band"]
elif name.startswith("coherence_"):
axes = ["task", "receiver", "block", "coherence"]
elif name.startswith("signal_") or "_psd_" in name:
axes = ["task", "receiver", "block", "signal"]
else:
axes = ["task", "receiver", "block"]
if len(axes) != array.ndim:
raise AssertionError(f"schema axes for {family}.{name} do not match rank")
schema[name] = {
"dtype": str(array.dtype),
"shape": list(array.shape),
"axes": axes,
}
return schema
def validate_publishable_outputs(
self,
*,
accuracy_rows: list[dict[str, Any]],
order_accuracy_rows: list[dict[str, Any]],
accuracy_bootstrap: dict[str, Any],
spectral_rows: list[dict[str, Any]],
order_spectral_rows: list[dict[str, Any]],
d_order_rows: list[dict[str, Any]],
stage_rows: list[dict[str, Any]],
transfer: dict[str, Any],
transfer_rows: list[dict[str, Any]],
raw_rows: list[dict[str, Any]],
gate_rows: list[dict[str, Any]],
figures: Mapping[str, bytes],
report: bytes,
) -> dict[str, bool]:
expected_figures = {
"figures/accuracy_lowpass.svg",
"figures/mixing_depth_profile.svg",
"figures/spectral_stage_profile.svg",
"figures/coherence_depth_profile.svg",
"figures/transfer_heatmaps.svg",
"figures/accuracy_mixing_raw.svg",
}
scalar_count = len(transfer["scalar_names"])
raw_metric_names = {
"centered_rms",
"log10_centered_energy",
"noncentered_rms",
"gate_mean",
"gate_cv",
"gate_zero_fraction",
"gate_active_fraction",
"gate_clip_crossing_fraction",
}
expected_raw_count = len(TASK_ORDER) * NUM_BLOCKS * (3 * 3 + 5)
raw_keys = {
(row["task_id"], row["global_block_index"], row["signal"], row["metric"])
for row in raw_rows
}
raw_complete = len(raw_rows) == expected_raw_count and len(raw_keys) == len(raw_rows)
for row in raw_rows:
metric = row["metric"]
valid = int(row["valid_receivers"])
invalid = int(row["invalid_receivers"])
canonical = row["task_id"] in CANONICAL_ARMS
summary = finite_values((row["dataset_median"], row["q25"], row["q75"]))
row_ok = metric in raw_metric_names and valid + invalid == NUM_SPECTRAL_IMAGES
if metric in {"centered_rms", "noncentered_rms"} or metric.startswith("gate_"):
row_ok = row_ok and valid == NUM_SPECTRAL_IMAGES and invalid == 0
row_ok = row_ok and summary is not None
if metric in {"centered_rms", "noncentered_rms"} and summary is not None:
row_ok = row_ok and min(summary) >= 0.0
elif metric == "log10_centered_energy":
row_ok = row_ok and ((valid > 0 and summary is not None) or (valid == 0 and summary is None))
if canonical:
row_ok = row_ok and row["bootstrap_replicates"] == BOOTSTRAP_REPLICATES
if valid > 0:
row_ok = row_ok and finite_values(
(row["bootstrap_ci95_low"], row["bootstrap_ci95_high"])
) is not None
else:
row_ok = row_ok and row["bootstrap_ci95_low"] is None
row_ok = row_ok and row["bootstrap_ci95_high"] is None
else:
row_ok = row_ok and row["bootstrap_ci95_low"] is None
row_ok = row_ok and row["bootstrap_ci95_high"] is None
row_ok = row_ok and row["bootstrap_replicates"] is None
raw_complete = raw_complete and bool(row_ok)
expected_gate_count = len(TASK_ORDER) * NUM_BLOCKS * (
5 + len(BASES) * len(ROOT_OPERATOR_METRICS)
)
gate_keys = {
(row["task_id"], row["basis"], row["global_block_index"], row["metric"])
for row in gate_rows
}
gate_complete = len(gate_rows) == expected_gate_count and len(gate_keys) == len(gate_rows)
for row in gate_rows:
valid = int(row["valid_receivers"])
invalid = int(row["invalid_receivers"])
point_defined = finite_or_none(row["point"]) is not None
canonical = row["task_id"] in CANONICAL_ARMS
row_ok = valid + invalid == NUM_SPECTRAL_IMAGES
row_ok = row_ok and point_defined == (valid > 0)
if row["basis"] == "":
row_ok = row_ok and valid == NUM_SPECTRAL_IMAGES
row_ok = row_ok and finite_values(
(row["dataset_median"], row["q25"], row["q75"])
) is not None
if canonical:
row_ok = row_ok and row["bootstrap_replicates"] == BOOTSTRAP_REPLICATES
if point_defined:
row_ok = row_ok and finite_values(
(row["bootstrap_ci95_low"], row["bootstrap_ci95_high"])
) is not None
else:
row_ok = row_ok and row["bootstrap_ci95_low"] is None
row_ok = row_ok and row["bootstrap_ci95_high"] is None
else:
row_ok = row_ok and row["bootstrap_ci95_low"] is None
row_ok = row_ok and row["bootstrap_ci95_high"] is None
row_ok = row_ok and row["bootstrap_replicates"] is None
gate_complete = gate_complete and bool(row_ok)
d_order_complete = (
len(d_order_rows) == len(BASES) * NUM_BLOCKS
and len(
{
(row["basis"], row["global_block_index"])
for row in d_order_rows
}
)
== len(d_order_rows)
and all(set(row) == set(D_ORDER_SENSITIVITY_COLUMNS) for row in d_order_rows)
)
for row in d_order_rows:
d_order_complete = d_order_complete and row["registered_task_count"] == 3
for metric in D_ORDER_RANGE_METRICS:
values = [
finite_or_none(row[f"{metric}_{task_id}"])
for task_id in D_ORDER_TASKS
]
task_defined_flags_match = all(
bool(row[f"{metric}_{task_id}_defined"])
== (values[index] is not None)
for index, task_id in enumerate(D_ORDER_TASKS)
)
finite = [value for value in values if value is not None]
expected_alternate_min, expected_alternate_max, expected_alternate_defined = (
complete_alternate_range(values[1:])
)
expected_min = min(finite) if finite else None
expected_max = max(finite) if finite else None
d_order_complete = d_order_complete and (
task_defined_flags_match
and int(row[f"{metric}_defined_count"]) == len(finite)
and finite_or_none(row[f"{metric}_min"]) == expected_min
and finite_or_none(row[f"{metric}_max"]) == expected_max
and finite_or_none(row[f"{metric}_alternate_min"])
== expected_alternate_min
and finite_or_none(row[f"{metric}_alternate_max"])
== expected_alternate_max
and bool(row[f"{metric}_alternate_range_defined"])
== expected_alternate_defined
)
checks = {
"canonical_accuracy_25_rows": len(accuracy_rows) == 25
and {
(row["task_id"], row["condition"]) for row in accuracy_rows
}
== set((task, condition) for task in CANONICAL_ARMS for condition in EXPECTED_CONDITIONS),
"order_accuracy_3_rows": len(order_accuracy_rows) == 3,
"accuracy_bootstrap_10k_and_complete": accuracy_bootstrap["replicates"]
== BOOTSTRAP_REPLICATES
and len(accuracy_bootstrap["rows"]) == 225,
"canonical_spectral_170_rows": len(spectral_rows)
== len(CANONICAL_ARMS) * len(BASES) * NUM_BLOCKS,
"order_spectral_102_rows": len(order_spectral_rows)
== 3 * len(BASES) * NUM_BLOCKS,
"D_registered_order_ranges_34_complete_rows": d_order_complete,
"canonical_stage_120_rows": len(stage_rows)
== len(CANONICAL_ARMS) * len(BASES) * 4 * len(ROOT_SIGNAL_PREFIXES),
"transfer_bootstrap_full_coverage": len(transfer_rows)
== len(CANONICAL_ARMS)
* len(BASES)
* NUM_BLOCKS
* (2 * NUM_BANDS * NUM_BANDS + scalar_count)
and transfer["primary_quantiles"].shape
== (len(CANONICAL_ARMS), len(BASES), NUM_BLOCKS, 4, 4, 3)
and transfer["scalar_quantiles"].shape
== (len(CANONICAL_ARMS), len(BASES), NUM_BLOCKS, scalar_count, 3),
"raw_diagnostics_complete_and_defined": raw_complete,
"gate_diagnostics_complete_and_defined": gate_complete,
"six_deterministic_svg_assets": set(figures) == expected_figures
and all(
content.startswith(b'<?xml version="1.0"')
and b"<svg" in content
and content.endswith(b"</svg>\n")
for content in figures.values()
),
"report_links_every_required_asset": all(
name.encode("utf-8") in report for name in sorted(expected_figures)
)
and all(
heading in report
for heading in (
b"Five-arm clean and low-pass accuracy",
b"Seventeen-block FFT M_off and M_res profile",
b"Four-stage carrier, gate, and output spectral profile",
b"rho_used depth profile",
b"D order-sensitivity range",
b"D registered-order ranges by block",
b"Failure and validity disclosures",
)
)
and b"d_order_sensitivity_by_block.csv" in report
and b"cannot prove that a specific internal gate" in report
and all(b"registered-order" in figures[name] for name in expected_figures),
}
if not all(checks.values()):
failed = sorted(key for key, passed in checks.items() if not passed)
raise ValidationFailure(f"publishable-output checklist failed: {failed}")
return checks
def build_root_artifacts(self) -> dict[str, bytes]:
bootstrap_weights = self.bootstrap_weights(self.tasks["B"].spectral["class_id"])
accuracy_bootstrap = self.accuracy_bootstrap()
transfer = self.transfer_bootstrap(bootstrap_weights)
bootstrap = self.paired_bootstrap(bootstrap_weights, transfer)
statistics = self.spectral_block_bootstrap(bootstrap_weights, transfer)
raw_amplitude = self.raw_amplitude_diagnostics(bootstrap_weights)
coherence = self.coherence_diagnostics()
decision, points = self.claim_decision(bootstrap, raw_amplitude)
accuracy_rows = [
row for task_id in CANONICAL_ARMS for row in self.tasks[task_id].accuracy_rows
]
order_accuracy_rows = [
row
for task_id in ("D_order1", "D_order2", "B_order1")
for row in self.tasks[task_id].accuracy_rows
]
spectral_rows = self.canonical_spectral_rows(statistics)
order_spectral_rows = self.order_probe_spectral_rows()
d_order_rows = self.d_order_sensitivity_rows(raw_amplitude)
stage_rows = self.canonical_stage_rows(statistics)
gate_rows = self.gate_operating_rows(statistics, bootstrap_weights)
transfer_rows = transfer["rows"]
figures = self.build_figures(
accuracy_bootstrap,
statistics,
transfer,
raw_amplitude,
points,
d_order_rows,
)
report = self.root_report(
points,
decision,
accuracy_rows,
accuracy_bootstrap,
spectral_rows,
stage_rows,
coherence,
raw_amplitude,
d_order_rows,
)
publishable_checks = self.validate_publishable_outputs(
accuracy_rows=accuracy_rows,
order_accuracy_rows=order_accuracy_rows,
accuracy_bootstrap=accuracy_bootstrap,
spectral_rows=spectral_rows,
order_spectral_rows=order_spectral_rows,
d_order_rows=d_order_rows,
stage_rows=stage_rows,
transfer=transfer,
transfer_rows=transfer_rows,
raw_rows=raw_amplitude,
gate_rows=gate_rows,
figures=figures,
report=report,
)
self.check(
"root.publishable_output_checklist",
all(publishable_checks.values()),
"all required machine-readable tables and deterministic figures must be complete",
checklist=publishable_checks,
)
formal_complete = all(publishable_checks.values()) and all(
row["passed"] for row in self.checks.values()
)
if not formal_complete:
raise ValidationFailure("formal completion checklist did not pass")
accuracy_npz = self.aggregate_accuracy_npz()
spectral_npz = self.aggregate_spectral_npz()
transfer_npz = self.aggregate_transfer_npz(bootstrap, transfer)
finished_at = self.deterministic_finished_time()
global_summary = {task_id: points[task_id] for task_id in TASK_ORDER}
root_results = {
"schema_version": 1,
"protocol_id": PROTOCOL_ID,
"execution_id": self.manifest["execution_id"],
"status": "validated",
"formal_complete": formal_complete,
"order_audit_complete": True,
"matched_total_mixing_supported": decision["matched_total_mixing_supported"],
"claim_decision": decision,
"global_depth": global_summary,
"task_frequency_summary": {
task_id: self.tasks[task_id].results["task_frequency_summary"]
for task_id in CANONICAL_ARMS
},
"bootstrap": bootstrap,
"accuracy_bootstrap": accuracy_bootstrap,
"per_image_accuracy_schema": self.array_schema(
accuracy_npz, family="accuracy"
),
"per_image_spectral_schema": self.array_schema(
spectral_npz, family="spectral"
),
"publishable_output_checklist": publishable_checks,
"canonical_table_rows": {
"accuracy_by_condition": len(accuracy_rows),
"spectral_by_block": len(spectral_rows),
"spectral_by_stage": len(stage_rows),
"order_probe_accuracy": len(order_accuracy_rows),
"order_probe_spectral_by_block": len(order_spectral_rows),
"d_order_sensitivity_by_block": len(d_order_rows),
"transfer_bootstrap_by_block": len(transfer_rows),
},
"raw_amplitude_diagnostics": {
"estimator": "per-receiver channel median; observed dataset median/IQR",
"bootstrap": {
"replicates": BOOTSTRAP_REPLICATES,
"seed": BOOTSTRAP_SEED,
"scheme": "class-stratified receiver resampling shared across arms and blocks",
"canonical_arms_only": True,
},
"rows": raw_amplitude,
},
"coherence_diagnostics": {
"estimator": "HW-centered Pearson per channel, then receiver and class-equal summaries",
"rows": coherence,
},
"gate_operating_diagnostics": {
"primary_q_estimator": (
"runner per-image channel median, then dataset median/IQR and "
"class-stratified bootstrap interval of the median"
),
"rows": len(gate_rows),
},
"task_order": list(TASK_ORDER),
"source_hashes": {
"input_manifest_sha256": file_sha256(self.manifest_path),
"protocol_sha256": self.manifest["protocol"]["sha256"],
"runner_sha256": file_sha256(self.runner_path),
"aggregator_sha256": file_sha256(Path(__file__).resolve()),
"shared_subset_sha256": self.manifest["spectral_subset"]["sha256"],
"alignment_source_equivalence_sha256": file_sha256(
self.root / "alignment_source_equivalence.json"
),
},
"finished_at_utc": finished_at,
"complete_marker_written_by_aggregator": False,
}
validation = {
"schema_version": 1,
"protocol_id": PROTOCOL_ID,
"status": "passed",
"formal_complete": formal_complete,
"validator_sha256": file_sha256(Path(__file__).resolve()),
"input_manifest_sha256": file_sha256(self.manifest_path),
"protocol_sha256": self.manifest["protocol"]["sha256"],
"tasks": list(TASK_ORDER),
"checks": self.checks,
"publishable_output_checklist": publishable_checks,
"errors": [],
"validated_at_utc": finished_at,
"writes_complete_marker": False,
}
frozen_protocol_bytes = Path(self.manifest["protocol"]["path"]).read_bytes()
frozen_protocol_text = frozen_protocol_bytes.decode("utf-8")
protocol_payload = {
"schema_version": 1,
"protocol_id": PROTOCOL_ID,
"protocol_path": self.manifest["protocol"]["path"],
"protocol_sha256": self.manifest["protocol"]["sha256"],
"frozen_protocol_markdown_utf8": frozen_protocol_text,
"input_manifest": str(self.manifest_path),
"input_manifest_sha256": file_sha256(self.manifest_path),
"input_manifest_artifact": "input_manifest.json",
"frozen_input_manifest": self.manifest,
"aggregation_constants": {
"task_order": list(TASK_ORDER),
"canonical_arms": list(CANONICAL_ARMS),
"bases": list(BASES),
"signals": list(SIGNAL_NAMES),
"coherence_names": list(COHERENCE_NAMES),
"stage_depths": list(STAGE_DEPTHS),
"num_images": NUM_IMAGES,
"num_spectral_images": NUM_SPECTRAL_IMAGES,
"num_blocks": NUM_BLOCKS,
"num_classes": NUM_CLASSES,
"num_bands": NUM_BANDS,
"bootstrap_replicates": BOOTSTRAP_REPLICATES,
"bootstrap_seed": BOOTSTRAP_SEED,
"measurement_constants": {
"radial_band_edges": [0.0, 0.25, 0.5, 0.75, 1.0],
"high_frequency_split": 0.5,
"fft_normalization": "orthonormal 2D FFT; centered maps; no window",
"dct_normalization": "orthonormal 2D DCT-II; centered maps; no window",
"per_image_channel_normalization": True,
"lowpass_order": 4,
"lowpass_cutoffs": list(
self.manifest["runtime"]["lowpass_cutoffs"]
),
"centered_energy_threshold": (
"32 * finfo(float64).eps * max(H*W,1) * "
"sum(noncentered_map^2)"
),
"conditional_undefined_policy": (
"blank with explicit defined/valid counts; never numeric-zero imputation"
),
"primary_suppressed_transfer_policy": "valid suppressed rows are all-zero",
},
"mechanical_tolerances": {
"gate_reconstruction_rtol": 1e-6,
"gate_reconstruction_atol": 1e-7,
"transform_reconstruction_relative_l2_max": 1e-10,
"parseval_relative_error_max": 1e-10,
"constant_gate_m_off_max": 1e-6,
"identity_coherence_absolute_error_max": 1e-7,
"invalid_fraction_strict_upper_bound": 0.01,
"B_order_normalized_metric_absolute_max": 1e-6,
"mixing_denominator_floor": 1e-6,
},
"interpretation_thresholds": {
"comparable_fft_relative_margin": 0.10,
"comparable_dct_relative_margin": 0.15,
"comparable_suppression_absolute_margin": 0.05,
"D_minimum_B_mixing_fraction": 0.50,
"D_minimum_top1_gap": 10.0,
"C_minimum_B_mixing_fraction": 0.80,
"C_maximum_top1_gap": 2.0,
"SC_minimum_top1_gap_below_C": 3.0,
"D_order_m_off_relative_narrowing": 0.20,
"D_order_top1_absolute_narrowing": 2.0,
},
},
"task_count": 8,
}
package_lock = self.package_lock_payload()
provenance = self.manifest["code_provenance"]
environment_payload = {
"schema_version": 1,
"protocol_id": PROTOCOL_ID,
"package_lock": package_lock,
"formal_task_package_lock": load_json(
self.tasks["B"].root / "environment.json"
)["package_lock"],
"code_manifest_identity": {
"audit_runtime": {
"code_sha256": provenance["audit_runtime_code_sha256"],
"manifest": provenance["audit_runtime_manifest"],
"manifest_sha256": provenance["audit_runtime_manifest_sha256"],
"gmnet_source_sha256": provenance["audit_runtime_gmnet_sha256"],
},
"alignment_training": {
"code_sha256": provenance["alignment_training_code_sha256"],
"manifest": provenance["alignment_training_manifest"],
"manifest_sha256": provenance["alignment_training_manifest_sha256"],
"source_snapshot_manifest": provenance[
"alignment_source_snapshot_manifest"
],
"source_snapshot_manifest_sha256": provenance[
"alignment_source_snapshot_manifest_sha256"
],
"gmnet_source_sha256": provenance["alignment_source_gmnet_sha256"],
},
"runner_sha256": file_sha256(self.runner_path),
"aggregator_sha256": file_sha256(Path(__file__).resolve()),
},
"task_environments": {
task_id: load_json(self.tasks[task_id].root / "environment.json")
for task_id in TASK_ORDER
},
}
checkpoint_payload = {
"schema_version": 1,
"protocol_id": PROTOCOL_ID,
"training_code_boundaries": {
"audit_runtime_code_sha256": provenance["audit_runtime_code_sha256"],
"alignment_training_code_sha256": provenance[
"alignment_training_code_sha256"
],
"task_training_code_sha256": {
task_id: self.manifest_arm(EXPECTED_TASK[task_id][0])[
"training_code_sha256"
]
for task_id in TASK_ORDER
},
},
"tasks": {
task_id: load_json(self.tasks[task_id].root / "checkpoint_manifest.json")
for task_id in TASK_ORDER
},
}
pairing_payload = {
"schema_version": 1,
"protocol_id": PROTOCOL_ID,
"tasks": {task_id: self.tasks[task_id].pairing for task_id in TASK_ORDER},
}
artifacts: dict[str, bytes] = {
"protocol.json": stable_json(protocol_payload),
"frozen_protocol.md": frozen_protocol_bytes,
"input_manifest.json": self.manifest_path.read_bytes(),
"environment.json": stable_json(environment_payload),
"checkpoint_manifest.json": stable_json(checkpoint_payload),
"subset_manifest.jsonl": Path(
self.manifest["spectral_subset"]["artifact_path"]
).read_bytes(),
"accuracy_by_condition.csv": csv_bytes(ACCURACY_COLUMNS, accuracy_rows),
"accuracy_bootstrap.csv": csv_bytes(
ACCURACY_BOOTSTRAP_COLUMNS, accuracy_bootstrap["rows"]
),
"order_probe_accuracy.csv": csv_bytes(
ACCURACY_COLUMNS, order_accuracy_rows
),
"per_image_accuracy.npz": deterministic_npz_bytes(accuracy_npz),
"per_image_spectral.npz": deterministic_npz_bytes(spectral_npz),
"spectral_by_block.csv": csv_bytes(ROOT_SPECTRAL_COLUMNS, spectral_rows),
"order_probe_spectral_by_block.csv": csv_bytes(
ORDER_PROBE_SPECTRAL_COLUMNS, order_spectral_rows
),
"d_order_sensitivity_by_block.csv": csv_bytes(
D_ORDER_SENSITIVITY_COLUMNS, d_order_rows
),
"spectral_by_stage.csv": csv_bytes(ROOT_STAGE_COLUMNS, stage_rows),
"raw_amplitude_by_block.csv": csv_bytes(
RAW_AMPLITUDE_COLUMNS, raw_amplitude
),
"coherence_by_block.csv": csv_bytes(COHERENCE_COLUMNS, coherence),
"gate_operating_diagnostics.csv": csv_bytes(
GATE_OPERATING_COLUMNS, gate_rows
),
"transfer_bootstrap_by_block.csv": csv_bytes(
TRANSFER_BOOTSTRAP_COLUMNS, transfer_rows
),
"transfer_matrices.npz": deterministic_npz_bytes(transfer_npz),
"batch_pairing_manifest.json": stable_json(pairing_payload),
"results.json": stable_json(root_results),
"REPORT.md": report,
"validation.json": stable_json(validation),
}
artifacts.update(figures)
return artifacts
@staticmethod
def install_artifacts_atomically(root: Path, artifacts: Mapping[str, bytes]) -> None:
temporary = Path(tempfile.mkdtemp(prefix=".aggregate.", dir=root))
try:
for name, content in artifacts.items():
path = temporary / name
path.parent.mkdir(parents=True, exist_ok=True)
path.write_bytes(content)
for name in artifacts:
(root / name).parent.mkdir(parents=True, exist_ok=True)
os.replace(temporary / name, root / name)
finally:
shutil.rmtree(temporary, ignore_errors=True)
def write_or_check_root_artifacts(
self, artifacts: dict[str, bytes], *, check_only: bool
) -> None:
evidence_paths = [
self.root / "alignment_source_equivalence.json",
*[
self.tasks[task_id].root / name
for task_id in TASK_ORDER
for name in REQUIRED_TASK_FILES
],
]
hash_lines: list[str] = []
for path in sorted(evidence_paths, key=lambda item: item.relative_to(self.root).as_posix()):
relative = path.relative_to(self.root).as_posix()
hash_lines.append(f"{file_sha256(path)} {relative}\n")
for name in sorted(artifacts):
if name != "validation.json":
hash_lines.append(f"{bytes_sha256(artifacts[name])} {name}\n")
# validation.json is source evidence too; it does not contain artifact hashes.
hash_lines.append(
f"{bytes_sha256(artifacts['validation.json'])} validation.json\n"
)
artifacts["source_artifacts.sha256"] = "".join(hash_lines).encode("utf-8")
if check_only:
mismatches = [
name
for name, content in artifacts.items()
if not (self.root / name).is_file() or (self.root / name).read_bytes() != content
]
if mismatches:
raise ValidationFailure(
f"deterministic aggregate differs from existing root artifacts: {mismatches}"
)
return
if (self.root / "COMPLETE").exists():
raise ValidationFailure("refusing to regenerate a root that already has COMPLETE")
existing = [name for name in artifacts if (self.root / name).exists()]
if existing:
raise ValidationFailure(f"refusing to overwrite existing aggregate files: {existing}")
self.install_artifacts_atomically(self.root, artifacts)
def failed_validation_payload(self) -> bytes:
return stable_json(
{
"schema_version": 1,
"protocol_id": PROTOCOL_ID,
"status": "failed",
"formal_complete": False,
"validator_sha256": file_sha256(Path(__file__).resolve()),
"input_manifest": str(self.manifest_path),
"input_manifest_sha256": (
file_sha256(self.manifest_path) if self.manifest_path.is_file() else None
),
"checks": self.checks,
"errors": self.errors,
"writes_complete_marker": False,
}
)
def run_self_test() -> dict[str, Any]:
global BOOTSTRAP_REPLICATES, NUM_CLASSES, NUM_IMAGES, NUM_SPECTRAL_IMAGES
checks: dict[str, bool] = {}
arrays = {
"z": np.arange(12, dtype=np.int16).reshape(3, 4),
"a": np.asarray(["fft", "dct"]),
}
first = deterministic_npz_bytes(arrays)
second = deterministic_npz_bytes(arrays)
checks["deterministic_npz_bytes"] = first == second
with tempfile.TemporaryDirectory(prefix="e4_aggregator_selftest_") as directory:
root = Path(directory)
npz = root / "fixture.npz"
npz.write_bytes(first)
with np.load(npz, allow_pickle=False) as loaded:
checks["deterministic_npz_roundtrip"] = np.array_equal(loaded["z"], arrays["z"])
duplicate = root / "duplicate.json"
duplicate.write_text('{"x": 1, "x": 2}\n', encoding="utf-8")
try:
load_json(duplicate)
except DuplicateKeyError:
checks["duplicate_json_rejected"] = True
else:
checks["duplicate_json_rejected"] = False
artifact = root / "artifact.bin"
artifact.write_bytes(b"frozen")
line = f"{file_sha256(artifact)} artifact.bin\n"
checks["sha256_line_format"] = len(line.split(" ", 1)[0]) == 64
nested = b"<svg>nested</svg>\n"
AuditValidator.install_artifacts_atomically(
root, {"figures/nested/test.svg": nested}
)
checks["nested_artifact_atomic_write"] = (
root / "figures/nested/test.svg"
).read_bytes() == nested
confidence = np.asarray([0.9, 0.8, 0.2], dtype=np.float64)
correct = np.asarray([True, False, True])
checks["ece_percentage_points"] = math.isclose(
ece_15(confidence, correct), 56.666666666666664, abs_tol=1e-12
)
class_ids = np.arange(NUM_CLASSES, dtype=np.int16)
values = np.arange(NUM_CLASSES, dtype=np.float64)
checks["class_equal_reduction"] = math.isclose(
class_equal_mean(values, class_ids), 499.5, abs_tol=0.0
)
imbalanced_class_ids = np.concatenate(
[
np.repeat(np.arange(904, dtype=np.int16), 4),
np.repeat(np.arange(904, 1000, dtype=np.int16), 5),
]
)
imbalanced_values = np.zeros(4096, dtype=np.float64)
cursor = 904 * 4
for _ in range(96):
imbalanced_values[cursor + 4] = 100.0
cursor += 5
image_estimate = image_equal_mean(imbalanced_values)
class_estimate = class_equal_mean(imbalanced_values, imbalanced_class_ids)
checks["image_equal_differs_from_class_equal"] = (
not math.isclose(image_estimate, class_estimate, rel_tol=0.0, abs_tol=1e-12)
and math.isclose(image_estimate, 9600.0 / 4096.0, abs_tol=1e-12)
and math.isclose(class_estimate, 1.92, abs_tol=1e-12)
)
summary_key = ("fft", 0, "gated_product")
left_summary = {
summary_key: {
"task_id": "B",
"order": "canonical",
"arm": "B",
"m_res_conditional": None,
"transfer_primary": np.eye(4, dtype=np.float64),
}
}
right_summary = {
summary_key: {
"task_id": "B_order1",
"order": "salt1",
"arm": "B",
"m_res_conditional": None,
"transfer_primary": np.eye(4, dtype=np.float64),
}
}
identity_comparison = compare_block_summary_registries(left_summary, right_summary)
checks["B_order_identity_difference_allowed"] = bool(
identity_comparison["field_registry_identical"]
and identity_comparison["definedness_equal"]
and identity_comparison["maximum_absolute_metric_difference"] == 0.0
)
changed_definedness = {
summary_key: {**right_summary[summary_key], "m_res_conditional": 0.0}
}
changed_matrix = {
summary_key: {
**right_summary[summary_key],
"transfer_primary": np.eye(4, dtype=np.float64),
}
}
changed_matrix[summary_key]["transfer_primary"][0, 1] = 0.1
checks["B_order_definedness_and_matrix_changes_rejected"] = bool(
not compare_block_summary_registries(
left_summary, changed_definedness
)["definedness_equal"]
and compare_block_summary_registries(
left_summary, changed_matrix
)["maximum_absolute_metric_difference"]
> 1e-6
)
checks["raw_rms_completion_guard"] = bool(
complete_nonnegative_rms(np.asarray([0.0, 1.0]))
and not complete_nonnegative_rms(np.asarray([0.0, np.nan]))
and not complete_nonnegative_rms(np.asarray([0.0, -1.0]))
)
checks["section_11_3_joint_decline_truth_table"] = bool(
section_11_3_joint_decline(True, True, True, True)
and not section_11_3_joint_decline(True, True, True, False)
and registered_decline_state(0.5, 1.0) == "decline"
and registered_decline_state(1.0, 1.0) == "not_decline"
and registered_decline_state(None, 1.0) == "undefined"
)
saved_globals = (BOOTSTRAP_REPLICATES, NUM_CLASSES, NUM_SPECTRAL_IMAGES)
try:
BOOTSTRAP_REPLICATES = 3
NUM_CLASSES = 2
NUM_SPECTRAL_IMAGES = 4
tiny_class_ids = np.asarray([0, 0, 1, 1], dtype=np.int16)
tiny_weights = np.asarray(
[[1, 1, 1, 1], [2, 0, 2, 0], [0, 2, 0, 2]], dtype=np.uint8
)
tiny_values = np.asarray(
[[1.0, np.nan], [3.0, np.nan], [10.0, np.nan], [14.0, np.nan]],
dtype=np.float64,
)
tiny_image = AuditValidator.bootstrap_estimates(
tiny_values,
tiny_class_ids,
tiny_weights,
estimator="image_equal",
chunk_size=1,
)
tiny_class = AuditValidator.bootstrap_estimates(
tiny_values,
tiny_class_ids,
tiny_weights,
estimator="class_equal",
chunk_size=1,
)
tiny_quantiles = AuditValidator.bootstrap_quantiles(tiny_image)
repeated = AuditValidator.bootstrap_estimates(
tiny_values,
tiny_class_ids,
tiny_weights,
estimator="image_equal",
chunk_size=1,
)
checks["shared_bootstrap_shape_and_determinism"] = (
tiny_image.shape == (3, 2)
and tiny_class.shape == (3, 2)
and tiny_quantiles.shape == (2, 3)
and np.array_equal(tiny_image, repeated, equal_nan=True)
and np.all(np.isnan(tiny_image[:, 1]))
and np.all(np.isnan(tiny_quantiles[1]))
)
checks["all_constant_suppressed_defined_mask"] = bool(
not np.isfinite(tiny_quantiles[1]).any()
and np.isfinite(tiny_quantiles[0]).all()
)
finally:
BOOTSTRAP_REPLICATES, NUM_CLASSES, NUM_SPECTRAL_IMAGES = saved_globals
saved_accuracy_globals = (BOOTSTRAP_REPLICATES, NUM_CLASSES, NUM_IMAGES)
try:
BOOTSTRAP_REPLICATES = 3
NUM_CLASSES = 2
NUM_IMAGES = 100
validator = object.__new__(AuditValidator)
validator.tasks = {}
target = np.repeat(np.arange(2, dtype=np.int16), 50)
canonical_index = np.arange(100, dtype=np.int64)
for task_index, task_id in enumerate(TASK_ORDER):
conditions = EXPECTED_CONDITIONS if task_id in CANONICAL_ARMS else ("unfiltered",)
condition_count = len(conditions)
top1 = np.ones((condition_count, 100), dtype=np.bool_)
top5 = np.ones_like(top1)
if task_id in CANONICAL_ARMS:
for condition_index in range(1, condition_count):
top1[condition_index, : condition_index + task_index + 1] = False
accuracy = {
"canonical_index": canonical_index,
"target": target,
"condition_names": np.asarray(conditions),
"top1_correct": top1,
"top5_correct": top5,
"nll": np.full((condition_count, 100), 0.5 + 0.01 * task_index, dtype=np.float32),
}
arm, order = EXPECTED_TASK[task_id]
validator.tasks[task_id] = TaskData(
task_id, arm, order, Path("."), {}, accuracy, {}, [], [], {}, {}
)
accuracy_first = AuditValidator.accuracy_bootstrap(validator)
accuracy_second = AuditValidator.accuracy_bootstrap(validator)
first_contrast = accuracy_first["rows"][0]
checks["accuracy_bootstrap_shape_sign_and_determinism"] = (
len(accuracy_first["rows"]) == 225
and stable_json(accuracy_first) == stable_json(accuracy_second)
and first_contrast["metric"] == "top1"
and first_contrast["unit"] == "percentage_points"
and first_contrast["point_difference"] < 0
)
finally:
BOOTSTRAP_REPLICATES, NUM_CLASSES, NUM_IMAGES = saved_accuracy_globals
known_left = np.asarray([True, False], dtype=np.float64)
known_right = np.asarray([False, False], dtype=np.float64)
checks["accuracy_contrast_sign_and_unit"] = math.isclose(
100.0 * float((known_left - known_right).mean()), 50.0, abs_tol=0.0
)
checks["formal_table_row_contracts"] = (
len(CANONICAL_ARMS) * len(EXPECTED_CONDITIONS) == 25
and len(CANONICAL_ARMS) * len(BASES) * NUM_BLOCKS == 170
and 3 * len(BASES) * NUM_BLOCKS == 102
and len(CANONICAL_ARMS) * len(BASES) * 4 * len(ROOT_SIGNAL_PREFIXES) == 120
and len(set(ROOT_SPECTRAL_COLUMNS)) == len(ROOT_SPECTRAL_COLUMNS)
and len(set(ROOT_STAGE_COLUMNS)) == len(ROOT_STAGE_COLUMNS)
)
checks["D_order_range_schema_complete"] = (
len(set(D_ORDER_SENSITIVITY_COLUMNS)) == len(D_ORDER_SENSITIVITY_COLUMNS)
and "m_off_D" in D_ORDER_SENSITIVITY_COLUMNS
and "m_off_alternate_min" in D_ORDER_SENSITIVITY_COLUMNS
and "m_off_D_order1_defined" in D_ORDER_SENSITIVITY_COLUMNS
and "m_off_alternate_range_defined" in D_ORDER_SENSITIVITY_COLUMNS
and "raw_y_centered_rms_dataset_median_D_order1"
in D_ORDER_SENSITIVITY_COLUMNS
and "transfer_primary_s0_t1_alternate_max"
in D_ORDER_SENSITIVITY_COLUMNS
and "transfer_conditional_s3_t3_defined_count"
in D_ORDER_SENSITIVITY_COLUMNS
)
complete_alt = complete_alternate_range((0.2, 0.4))
incomplete_alt = complete_alternate_range((0.2, None))
checks["D_order_range_fail_closed_definedness"] = (
complete_alt == (0.2, 0.4, True)
and incomplete_alt == (None, None, False)
)
checks["frozen_manifest_and_training_boundaries"] = (
DEFAULT_INPUT_MANIFEST.is_file()
and file_sha256(DEFAULT_INPUT_MANIFEST) == EXPECTED_INPUT_MANIFEST_SHA256
and EXPECTED_AUDIT_TRAINING_CODE_SHA256.startswith("f6bd434a")
and EXPECTED_ALIGNMENT_TRAINING_CODE_SHA256.startswith("4a62bc48")
)
lock_entries = ["numpy==2.5.0", "torch==2.9.0+cu130"]
lock_bytes = "".join(f"{entry}\n" for entry in lock_entries).encode("utf-8")
checks["package_lock_serialization_binding"] = (
bytes_sha256(lock_bytes)
== hashlib.sha256(b"numpy==2.5.0\ntorch==2.9.0+cu130\n").hexdigest()
)
figure_names = (
"accuracy_lowpass",
"mixing_depth_profile",
"spectral_stage_profile",
"coherence_depth_profile",
"transfer_heatmaps",
"accuracy_mixing_raw",
)
first_figures = {
name: AuditValidator.svg_line_chart(
name,
("a", "b"),
({"name": "fixture", "values": [0.0, 1.0], "low": [0.0, 0.9], "high": [0.1, 1.0]},),
y_label="fixture",
)
for name in figure_names
}
second_figures = {
name: AuditValidator.svg_line_chart(
name,
("a", "b"),
({"name": "fixture", "values": [0.0, 1.0], "low": [0.0, 0.9], "high": [0.1, 1.0]},),
y_label="fixture",
)
for name in figure_names
}
checks["six_svg_assets_byte_deterministic"] = (
first_figures == second_figures
and len(first_figures) == 6
and all(value.endswith(b"</svg>\n") for value in first_figures.values())
)
figure_d_rows: list[dict[str, Any]] = []
for basis in BASES:
for block in range(NUM_BLOCKS):
row: dict[str, Any] = {
"basis": basis,
"global_block_index": block,
"m_off_D": 0.2,
"m_off_D_order1": 0.18,
"m_off_D_order2": 0.22,
"raw_y_centered_rms_dataset_median_D": 1.0,
"raw_y_centered_rms_dataset_median_D_order1": 0.9,
"raw_y_centered_rms_dataset_median_D_order2": 1.1,
}
for kind in ("primary", "conditional"):
for source in range(NUM_BANDS):
for target in range(NUM_BANDS):
metric = f"transfer_{kind}_s{source}_t{target}"
row[f"{metric}_alternate_min"] = 0.2
row[f"{metric}_alternate_max"] = 0.3
figure_d_rows.append(row)
heat_point = np.full(
(len(CANONICAL_ARMS), len(BASES), NUM_BLOCKS, NUM_BANDS, NUM_BANDS),
0.25,
dtype=np.float64,
)
heat_quantiles = np.stack(
(heat_point - 0.01, heat_point, heat_point + 0.01), axis=-1
)
conditional_heat_point = heat_point.copy()
conditional_heat_point[CANONICAL_ARMS.index("D"), 0, 8, 0, 0] = np.nan
heatmap_fixture = {
"primary_point": heat_point,
"conditional_point": conditional_heat_point,
"primary_quantiles": heat_quantiles,
"conditional_quantiles": heat_quantiles,
}
heatmap_bytes = AuditValidator.transfer_heatmap_svg(
heatmap_fixture, figure_d_rows
)
scatter_points = {
task_id: {
"fft_m_off": 0.2 + 0.01 * index,
"top1": 70.0 + index,
}
for index, task_id in enumerate(TASK_ORDER)
}
scatter_accuracy = {
(task_id, "unfiltered", "top1"): {
"bootstrap_ci95_low": 69.0 + index,
"bootstrap_ci95_high": 71.0 + index,
}
for index, task_id in enumerate(CANONICAL_ARMS)
}
scatter_transfer = {
"scalar_names": np.asarray(["m_off"]),
"global_scalar_quantiles": np.tile(
np.asarray([[[0.19, 0.2, 0.21]], [[0.19, 0.2, 0.21]]]),
(len(CANONICAL_ARMS), 1, 1),
).reshape(len(CANONICAL_ARMS), len(BASES), 1, 3),
}
scatter_raw = [
{
"task_id": task_id,
"signal": "gated_product",
"metric": "centered_rms",
"dataset_median": 1.0,
}
for task_id in CANONICAL_ARMS
]
scatter_bytes = AuditValidator.accuracy_mixing_svg(
scatter_accuracy,
scatter_transfer,
scatter_raw,
scatter_points,
figure_d_rows,
)
lowpass_na_bytes = AuditValidator.svg_line_chart(
"fixture",
EXPECTED_CONDITIONS,
(
{
"name": "D registered-order range (unfiltered; low-pass NA)",
"values": [1.0, None, None, None, None],
"low": [0.9, None, None, None, None],
"high": [1.1, None, None, None, None],
},
),
y_label="fixture",
)
source_text = Path(__file__).read_text(encoding="utf-8")
checks["D_order_figure_and_report_sentinels"] = (
b"CI " in heatmap_bytes
and b"alt " in heatmap_bytes
and b"canonical NA" in heatmap_bytes
and b"raw y RMS alternate-order range" in scatter_bytes
and b"low-pass NA" in lowpass_na_bytes
and "Section 11.3 primary basis: FFT" in source_text
and "inputs defined=" in source_text
and "cannot prove that a specific internal gate" in LOWPASS_CAUSAL_CAVEAT
)
checks["one_based_block_schema"] = (
EXPECTED_STAGES[:3] == (1, 1, 1)
and EXPECTED_STAGES[-3:] == (4, 4, 4)
and EXPECTED_STAGE_BLOCKS[:3] == (1, 2, 3)
and EXPECTED_STAGE_BLOCKS[-3:] == (1, 2, 3)
and len(EXPECTED_STAGES) == NUM_BLOCKS
)
primary = np.eye(4, dtype=np.float64)
offdiag = primary.copy()
np.fill_diagonal(offdiag, 0.0)
checks["constant_gate_m_off"] = float(offdiag.sum() / 4.0) <= 1e-6
checks["task_contract"] = set(TASK_ORDER) == set(EXPECTED_TASK) and len(TASK_ORDER) == 8
checks["registered_bootstrap_replicates"] = BOOTSTRAP_REPLICATES == 10_000
checks["arbitrary_independent_gate_generalization_forbidden"] = (
ARBITRARY_INDEPENDENT_GATE_GENERALIZATION_PERMITTED is False
)
checks["optional_finite_guard"] = (
finite_or_none(None) is None
and finite_or_none(float("nan")) is None
and finite_values((1.0, None)) is None
and finite_values((1.0, 2.0)) == [1.0, 2.0]
)
checks["aggregator_has_no_complete_write"] = "write_text(\"complete" not in Path(
__file__
).read_text(encoding="utf-8")
checks = {name: bool(value) for name, value in checks.items()}
if not all(checks.values()):
failed = sorted(name for name, passed in checks.items() if not passed)
raise AssertionError(f"aggregator self-test failed: {failed}")
return {
"schema_version": 1,
"status": "passed",
"checks": checks,
"validator_sha256": file_sha256(Path(__file__).resolve()),
}
def parse_args() -> argparse.Namespace:
parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument("--root", type=Path, help="root containing the eight task directories")
parser.add_argument("--input-manifest", type=Path, default=DEFAULT_INPUT_MANIFEST)
parser.add_argument("--runner", type=Path, default=DEFAULT_RUNNER)
parser.add_argument(
"--check-only",
action="store_true",
help="rebuild in memory and require every existing root aggregate byte to match",
)
parser.add_argument("--self-test", action="store_true")
return parser.parse_args()
def main() -> int:
args = parse_args()
if args.self_test:
print(stable_json(run_self_test()).decode("utf-8"), end="")
return 0
if args.root is None:
raise SystemExit("--root is required unless --self-test is used")
root = args.root.expanduser().resolve()
if not root.is_dir():
raise SystemExit(f"audit root does not exist: {root}")
validator = AuditValidator(root, args.input_manifest, args.runner)
try:
validator.validate_manifest_and_root()
validator.validate_all_tasks()
validator.validate_cross_task_contract()
if validator.errors or set(validator.tasks) != set(TASK_ORDER):
raise ValidationFailure("; ".join(validator.errors) or "not all tasks validated")
if not all(item["passed"] for item in validator.checks.values()):
raise ValidationFailure("one or more recorded checks did not pass")
artifacts = validator.build_root_artifacts()
validator.write_or_check_root_artifacts(artifacts, check_only=args.check_only)
except Exception as error:
if not validator.errors:
validator.errors.append(f"{type(error).__name__}: {error}")
failure_path = root / "validation.json"
if not args.check_only and not failure_path.exists() and not (root / "COMPLETE").exists():
temporary = root / f".validation.failed.{os.getpid()}.tmp"
temporary.write_bytes(validator.failed_validation_payload())
os.replace(temporary, failure_path)
print(f"E4 spectral aggregation denied: {error}", file=sys.stderr)
return 1
print(
json.dumps(
{
"status": "passed",
"root": str(root),
"check_only": args.check_only,
"complete_written": False,
},
sort_keys=True,
)
)
return 0
if __name__ == "__main__":
raise SystemExit(main())