gmnet/spectral_audit/scripts/reconstruct_alignment_snapshot.py

#!/usr/bin/env python3
"""Recover the exact E4 alignment model source from the recorded forward patch."""

from __future__ import annotations

import argparse
import hashlib
import json
from pathlib import Path


JOURNAL_ROOT = Path("/nfs/ywang29/GmNet/journal_exp")
DEFAULT_OUTPUT = Path(
    "/nfs/ywang29/GmNet/e4_spectral_audit/source_snapshots/alignment_4a62"
)
SESSION_PATH = Path(
    "/root/.codex/sessions/2026/07/12/"
    "rollout-2026-07-12T19-12-35-019f57be-e49b-77b3-9198-0721b55f06ff.jsonl"
)
ALIGNMENT_CODE_SHA256 = (
    "4a62bc48370247d882196cd9afc1a0f1629a5bbfd522c3f599ffaf0c1187641f"
)
MECHANISM_CODE_SHA256 = (
    "f6bd434a2ac86c772f2e23683431f3bb7ccb06f539558682a3bea6464bacebf9"
)

SOURCE_SPECS = {
    "gmnet/models/gmnet.py": {
        "current_sha256": (
            "8446a0ed7d6863f81e88929f3277d363c961372210279de7d0e770f636852f3c"
        ),
        "recovered_sha256": (
            "5291156084aaf72936d1f8896057e7e606f74ef05aed856df4940e4838dbe3ac"
        ),
        "recovered_size": 28103,
        "session_events": [
            {
                "timestamp": "2026-07-17T21:00:58.920Z",
                "jsonl_line": 6665,
            },
            {
                "timestamp": "2026-07-17T21:01:05.385Z",
                "jsonl_line": 6670,
            },
            {
                "timestamp": "2026-07-17T21:03:01.840Z",
                "jsonl_line": 6723,
            },
        ],
    },
    "gmnet/models/__init__.py": {
        "current_sha256": (
            "68a705c94c1223305f2d5ab18cc41faf36c35d90748fde5a32f4474222e4ef29"
        ),
        "recovered_sha256": (
            "9227138f9cd0e0110f57bad21b9302d8b5daa51cd63246e37c8ff2878eb2715e"
        ),
        "recovered_size": 722,
        "session_events": [
            {
                "timestamp": "2026-07-17T21:03:01.840Z",
                "jsonl_line": 6723,
            }
        ],
    },
}


GMNET_REVERSE_REPLACEMENTS = (
    (
        '''SUPPORTED_GATE_INTERVENTIONS: Final[tuple[str, ...]] = (\n'''
        '''    "baseline",\n'''
        '''    "stop_gradient",\n'''
        '''    "channel_derangement",\n'''
        '''    "batch_derangement",\n'''
        '''    "stop_gradient_channel_derangement",\n'''
        ''')\n'''
        '''CHANNEL_DERANGEMENT_INTERVENTIONS: Final[frozenset[str]] = frozenset(\n'''
        '''    {"channel_derangement", "stop_gradient_channel_derangement"}\n'''
        ''')\n'''
        '''STOP_GRADIENT_INTERVENTIONS: Final[frozenset[str]] = frozenset(\n'''
        '''    {"stop_gradient", "stop_gradient_channel_derangement"}\n'''
        ''')\n''',
        '''SUPPORTED_GATE_INTERVENTIONS: Final[tuple[str, ...]] = (\n'''
        '''    "baseline",\n'''
        '''    "stop_gradient",\n'''
        '''    "channel_derangement",\n'''
        ''')\n''',
    ),
    (
        '''        permutation = (\n'''
        '''            _channel_derangement(channels, seed)\n'''
        '''            if intervention in CHANNEL_DERANGEMENT_INTERVENTIONS\n'''
        '''            else None\n'''
        '''        )\n''',
        '''        permutation = (\n'''
        '''            _channel_derangement(channels, seed)\n'''
        '''            if intervention == "channel_derangement"\n'''
        '''            else None\n'''
        '''        )\n''',
    ),
    (
        '''        value = x\n'''
        '''        if self.gate_intervention == "batch_derangement":\n'''
        '''            if x.ndim < 1 or x.shape[0] < 2:\n'''
        '''                raise ValueError(\n'''
        '''                    "batch_derangement requires at least two samples per local "\n'''
        '''                    f"batch, got shape {tuple(x.shape)}"\n'''
        '''                )\n'''
        '''            shift = self.batch_derangement_shift(int(x.shape[0]))\n'''
        '''            value = x.roll(shifts=-shift, dims=0)\n'''
        '''        elif self.gate_intervention in CHANNEL_DERANGEMENT_INTERVENTIONS:\n'''
        '''            if x.ndim < 2 or x.shape[1] != self._gate_channels:\n'''
        '''                raise ValueError(\n'''
        '''                    "channel derangement expected channel dimension "\n'''
        '''                    f"{self._gate_channels}, got shape {tuple(x.shape)}"\n'''
        '''                )\n'''
        '''            assert self.gate_permutation is not None\n'''
        '''            value = x.index_select(1, self.gate_permutation)\n'''
        '''        if self.gate_intervention in STOP_GRADIENT_INTERVENTIONS:\n'''
        '''            value = value.detach()\n'''
        '''        return value\n'''
        '''\n'''
        '''    def batch_derangement_shift(self, batch_size: int) -> int:\n'''
        '''        """Return the seeded cyclic shift used for a local batch derangement."""\n'''
        '''\n'''
        '''        if isinstance(batch_size, bool) or not isinstance(batch_size, int):\n'''
        '''            raise TypeError("batch_size must be an integer")\n'''
        '''        if batch_size < 2:\n'''
        '''            raise ValueError("batch derangement requires batch_size >= 2")\n'''
        '''        return 1 + self.gate_intervention_seed % (batch_size - 1)\n''',
        '''        if self.gate_intervention == "baseline":\n'''
        '''            return x\n'''
        '''        if self.gate_intervention == "stop_gradient":\n'''
        '''            return x.detach()\n'''
        '''        if x.ndim < 2 or x.shape[1] != self._gate_channels:\n'''
        '''            raise ValueError(\n'''
        '''                "channel_derangement expected channel dimension "\n'''
        '''                f"{self._gate_channels}, got shape {tuple(x.shape)}"\n'''
        '''            )\n'''
        '''        assert self.gate_permutation is not None\n'''
        '''        return x.index_select(1, self.gate_permutation)\n''',
    ),
    (
        '''                        "is_bijection": is_bijection,\n'''
        '''                        "stops_gate_gradient": (\n'''
        '''                            module.gate_intervention\n'''
        '''                            in STOP_GRADIENT_INTERVENTIONS\n'''
        '''                        ),\n'''
        '''                        "channel_derangement": (\n'''
        '''                            module.gate_intervention\n'''
        '''                            in CHANNEL_DERANGEMENT_INTERVENTIONS\n'''
        '''                        ),\n'''
        '''                        "batch_derangement": (\n'''
        '''                            module.gate_intervention == "batch_derangement"\n'''
        '''                        ),\n'''
        '''                        "batch_shift_rule": (\n'''
        '''                            "1 + seed % (local_batch_size - 1)"\n'''
        '''                            if module.gate_intervention == "batch_derangement"\n'''
        '''                            else None\n'''
        '''                        ),\n''',
        '''                        "is_bijection": is_bijection,\n''',
    ),
    (
        '''__all__ = [\n    "CHANNEL_DERANGEMENT_INTERVENTIONS",\n''',
        '''__all__ = [\n''',
    ),
    (
        '''    "SmoothClippedSelfGate",\n    "STOP_GRADIENT_INTERVENTIONS",\n''',
        '''    "SmoothClippedSelfGate",\n''',
    ),
)


INIT_REVERSE_REPLACEMENTS = (
    (
        '''from .gmnet import (\n    CHANNEL_DERANGEMENT_INTERVENTIONS,\n''',
        '''from .gmnet import (\n''',
    ),
    (
        '''    SmoothClippedSelfGate,\n    STOP_GRADIENT_INTERVENTIONS,\n''',
        '''    SmoothClippedSelfGate,\n''',
    ),
    (
        '''__all__ = [\n    "CHANNEL_DERANGEMENT_INTERVENTIONS",\n''',
        '''__all__ = [\n''',
    ),
    (
        '''    "SmoothClippedSelfGate",\n    "STOP_GRADIENT_INTERVENTIONS",\n''',
        '''    "SmoothClippedSelfGate",\n''',
    ),
)


def sha256_bytes(value: bytes) -> str:
    return hashlib.sha256(value).hexdigest()


def recover(relative_path: str, replacements: tuple[tuple[str, str], ...]) -> bytes:
    spec = SOURCE_SPECS[relative_path]
    source = (JOURNAL_ROOT / relative_path).read_bytes()
    actual = sha256_bytes(source)
    if actual != spec["current_sha256"]:
        raise RuntimeError(
            f"current {relative_path} SHA256 mismatch: {actual} != "
            f"{spec['current_sha256']}"
        )
    text = source.decode("utf-8")
    for index, (postimage, preimage) in enumerate(replacements):
        count = text.count(postimage)
        if count != 1:
            raise RuntimeError(
                f"reverse replacement {index} for {relative_path} matched {count} times"
            )
        text = text.replace(postimage, preimage)
    recovered = text.encode("utf-8")
    if len(recovered) != spec["recovered_size"]:
        raise RuntimeError(
            f"recovered {relative_path} size mismatch: {len(recovered)} != "
            f"{spec['recovered_size']}"
        )
    digest = sha256_bytes(recovered)
    if digest != spec["recovered_sha256"]:
        raise RuntimeError(
            f"recovered {relative_path} SHA256 mismatch: {digest} != "
            f"{spec['recovered_sha256']}"
        )
    return recovered


def build_manifest(files: dict[str, bytes]) -> dict[str, object]:
    return {
        "schema_version": 1,
        "snapshot_id": "alignment_4a62_model_source",
        "alignment_code_sha256": ALIGNMENT_CODE_SHA256,
        "source_postimage_code_sha256": MECHANISM_CODE_SHA256,
        "recovery_method": "exact_reverse_of_recorded_forward_apply_patch",
        "session_path": str(SESSION_PATH),
        "files": [
            {
                "path": path,
                "size": len(content),
                "sha256": sha256_bytes(content),
                "alignment_manifest_sha256": SOURCE_SPECS[path][
                    "recovered_sha256"
                ],
                "session_events": SOURCE_SPECS[path]["session_events"],
            }
            for path, content in sorted(files.items())
        ],
    }


def main() -> int:
    parser = argparse.ArgumentParser()
    parser.add_argument("--output", type=Path, default=DEFAULT_OUTPUT)
    parser.add_argument("--check", action="store_true")
    args = parser.parse_args()

    # The original session is required once, at recovery time. Formal launch
    # containers only validate the already frozen snapshot against the encoded
    # reverse patch and hashes, so they do not depend on /root session storage.
    if not args.check and not SESSION_PATH.is_file():
        raise FileNotFoundError(f"recorded Codex session is missing: {SESSION_PATH}")

    files = {
        "gmnet/models/gmnet.py": recover(
            "gmnet/models/gmnet.py", GMNET_REVERSE_REPLACEMENTS
        ),
        "gmnet/models/__init__.py": recover(
            "gmnet/models/__init__.py", INIT_REVERSE_REPLACEMENTS
        ),
    }
    manifest = build_manifest(files)
    manifest_bytes = (
        json.dumps(manifest, indent=2, sort_keys=True) + "\n"
    ).encode("utf-8")

    if args.check:
        for relative_path, expected in files.items():
            path = args.output / relative_path
            if not path.is_file() or path.read_bytes() != expected:
                raise RuntimeError(f"snapshot mismatch: {path}")
        manifest_path = args.output / "source_manifest.json"
        if not manifest_path.is_file() or manifest_path.read_bytes() != manifest_bytes:
            raise RuntimeError(f"snapshot manifest mismatch: {manifest_path}")
        print(f"Validated exact alignment model snapshot at {args.output}")
        return 0

    for relative_path, content in files.items():
        destination = args.output / relative_path
        destination.parent.mkdir(parents=True, exist_ok=True)
        destination.write_bytes(content)
    (args.output / "source_manifest.json").write_bytes(manifest_bytes)
    print(f"Recovered exact alignment model snapshot at {args.output}")
    return 0


if __name__ == "__main__":
    raise SystemExit(main())