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def mkXRDTag(t): """basestring -> basestring Create a tag name in the XRD 2.0 XML namespace suitable for using with ElementTree """ return nsTag(XRD_NS_2_0, t)
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def auth( func=None, roles=None, permissions=None, requires=None, login_redirect=None, should_remember_referrer=True): """Guards a controller action against unauthorized and unauthenticated access. Args: roles (list|string): A list of roles that are able ...
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def site_stat_stmt(table, site_col, values_col, fun): """ Function to produce an SQL statement to make a basic summary grouped by a sites column. Parameters ---------- table : str The database table. site_col : str The column containing the sites. values_col : str T...
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def to_time_units(obj, freq): """Multiply each element with `freq_delta` to get result in time units.""" if not checks.is_array(obj): obj = np.asarray(obj) return obj * freq_delta(freq)
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import random def perform_learning_step(epoch): """ Makes an action according to eps-greedy policy, observes the result (next state, reward) and learns from the transition""" def exploration_rate(epoch): """# Define exploration rate change over time""" start_eps = 1.0 end_eps = 0....
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def read_bhrc(filename, **kwargs): """Read the Iran BHRC strong motion data format. Args: filename (str): path to BHRC data file. kwargs (ref): Other arguments will be ignored. Returns: list: Sequence of one StationStream object containing 3 StationTrace objects...
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def random_pdf(x, dx, seed_i=False, n_iter=1000, silent=True): """ Created on 24/06/2016 Modified on 29/06/2016 to reverse shape """ len0 = len(x) if not silent: print(len0) # Mod on 29/06/2016 x_pdf = np.zeros((len0, n_iter), dtype=np.float64) # x_pdf = np.zeros((n_iter, l...
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import itertools def vertical_split(im): """ Split an image vertically. This works for member list as well as (well, most times) scouting screenshots :param im: screenshot data :return: the ratio for resizing the screenshot, a list of (start, stop) chunks to use when looping """ im_gray = cv2...
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def interp2d(image): """ Bilinear interpolation method to be used for upscaling Args: tensor_nchw (tensor): tensor of shape (N, C, H, W) Return: tensor of shape (N, C, Hout, Wout), where Hout and Wout are computed by applying the scale factor to H and W """ # return ...
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def get(cls, key): """ Get an entity by key """ return build_key(cls, key).get()
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def page_not_found(__=None): """ What to return if a user requests an endpoint that doesn't exist. """ print(app.root_path) return transiter_error_handler(exceptions.PageNotFound(flask.request.path))
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import copy def rational_diagonal_form(self, return_matrix=False): """ Returns a diagonal form equivalent to Q over the fraction field of its defining ring. If the return_matrix is True, then we return the transformation matrix performing the diagonalization as the second argument. INPUT: ...
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def _format_source_error(filename, lineno, block): """ A helper function which generates an error string. This function handles the work of reading the lines of the file which bracket the error, and formatting a string which points to the offending line. The output is similar to: File "foo.py", li...
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def calc_exposure(k, src_rate, bgd_rate, read_noise, neff): """ Compute the time to get to a given significance (k) given the source rate, the background rate, the read noise, and the number of effective background pixels ----- time = calc_exposure(k, src_rate, bgd_rate, read_noise, neff) ...
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def decode_image(contents, channels=None, name=None): """Convenience function for `decode_gif`, `decode_jpeg`, and `decode_png`. Detects whether an image is a GIF, JPEG, or PNG, and performs the appropriate operation to convert the input bytes `string` into a `Tensor` of type `uint8`. Note: `decode_gif` return...
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def get_all_round_info_from_cache(): """Returns a dictionary containing all the round information. example: {"rounds": {"Round 1": {"start": start_date, "end": end_date,},}, "competition_start": start_date, "competition_end": end_date} """ rounds_info = cache_mgr.get_cache('r...
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def type_or_null(names): """Return the list of types `names` + the name-or-null list for every type in `names`.""" return [[name, 'null'] for name in names]
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def scratch(request, slug=None): """ Get or create a scratch """ if request.method == "GET": db_scratch = get_object_or_404(Scratch, slug=slug) return Response(ScratchSerializer(db_scratch).data) elif request.method == "POST": data = request.data if "target_as...
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def variables_pool(variable, question='Variable to analyze'): """ :param variable: the variable chosen from variable pool in your dataframe :param question: default parameter ("Variable to analyze") don't :return: """ def guide(diz): """ function that guides user to chose the ri...
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import torch def quadratic_matmul(x: torch.Tensor, A: torch.Tensor) -> torch.Tensor: """Matrix quadratic multiplication. Parameters ---------- x : torch.Tensor, shape=(..., X) A batch of vectors. A : torch.Tensor, shape=(..., X, X) A batch of square matrices. Returns ----...
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def get_global_step(estimator): """Return estimator's last checkpoint.""" return int(estimator.latest_checkpoint().split("-")[-1])
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from src.priorityq import PriorityQ def test_q(): """Test fixtures of priority qs.""" q0 = PriorityQ() q1 = PriorityQ() q1.insert('sgds', 10) q1.insert('another', 9) q1.insert('another', 8) q1.insert('another', 7) q1.insert('another', 6) return q0, q1
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def make_mlb_classifier_and_data_with_feature_extraction_pipeline(): """Create data set and classifier for testing a multi-label classification scenario with a feature extraction pipeline. """ newsgroups_train = fetch_20newsgroups(subset="train") X, Y = newsgroups_train.data, newsgroups_train.targe...
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def read_volume(filepath, dtype=None, return_affine=False): """Return numpy array of data from a neuroimaging file. Args: filepath: path-like, path to volume file. dtype: dtype-like or str, data type of the volume data. return_affine: boolean, if true, return tuple of volume data and ...
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import traceback import json def Import(context, request): """ FOSS FIAStar analysis results """ infile = request.form['data_file'] fileformat = request.form['format'] artoapply = request.form['artoapply'] override = request.form['override'] sample = request.form.get('sample', ...
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def meantime_blockedby_pp_hat(arr_rate, pp_mean_svctime, pp_cap, pp_cv2_svctime): """ Approximate unconditional mean time blocked in ldr or csect waiting for a pp bed. Modeling pp as an M/G/c queue and using approximation by Kimura. """ pp_svcrate = 1.0 / pp_mean_svctime meantime = qng.mgc_mean...
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def _combine_grad(evoked, picks): """Create a new instance of Evoked with combined gradiometers (RMSE).""" def pair_and_combine(data): data = data ** 2 data = (data[::2, :] + data[1::2, :]) / 2 return np.sqrt(data) picks, ch_names = _grad_pair_pick_and_name(evoked.info, picks) th...
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def each_segment(time_ci, energy_ci, rate_ref, meta_dict,\ start_time, end_time): """ Turns the event list into a populated histogram, stacks the reference band, and makes the cross spectrum, per segment of light curve. Parameters ---------- time_ci : np.array of floats 1-D array of...
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import torch def box_iou(boxes1, boxes2): """Compute pairwise IoU across two lists of anchor or bounding boxes. Defined in :numref:`sec_anchor`""" def box_area(boxes): return ((boxes[:, 2] - boxes[:, 0]) * (boxes[:, 3] - boxes[:, 1])) # Shape of `boxes1`, `boxes2`, `a...
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def feature_reconstruction_loss(base, output): """ Compute the content loss for style transfer. Inputs: - output: features of the generated image, Tensor with shape [height, width, channels] - base: features of the content image, Tensor with shape [height, width, channels] Returns: - scala...
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import time def attempt_to_acquire_lock(s3_conn, lock_uri, sync_wait_time, job_name, mins_to_expiration=None): """Returns True if this session successfully took ownership of the lock specified by ``lock_uri``. """ key = _lock_acquire_step_1(s3_conn, lock_uri, job_name, mins...
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import torch def multiclass_nms( multi_bboxes, multi_scores, score_thr, nms_cfg, max_num=-1, score_factors=None, multi_attrs=None, multi_feats=None, ): """NMS for multi-class bboxes. Args: multi_bboxes (Tensor): shape (n, #class*4) or (n, 4) multi_scores (Tenso...
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import torch def get_device(): """ Get the device on which running.""" return torch.device("cuda" if torch.cuda.is_available() else "cpu")
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def make_png_thumbnail(): """Make a thumbail of the first page of a PDF and return it. :return: A response containing our file and any errors :type: HTTPS response """ f = request.files["file"] max_dimension = int(request.args.get("max_dimension")) with NamedTemporaryFile(suffix=".%s" % "pd...
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import uuid def rand_uuid(): """Generate a random UUID string :return: a random UUID (e.g. '1dc12c7d-60eb-4b61-a7a2-17cf210155b6') :rtype: string """ return str(uuid.uuid4())
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import logging def get_logfile_name(): """ Return the current logfile name """ return logging.getLoggerClass().root.handlers[0].baseFilename
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def sign(x, y): """Fortran's sign transfer function""" return x * tf.math.sign(y)
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def filter_linksearchtotals(queryset, filter_dict): """ Adds filter conditions to a LinkSearchTotal queryset based on form results. queryset -- a LinkSearchTotal queryset filter_dict -- a dictionary of data from the user filter form Returns a queryset """ if "start_date" in filter_dict: ...
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def mean(samps): """ Find the mean point forecasts. """ return np.mean(samps, axis=0)
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def all(): """ Returns all W2S Scenarios in [GWh/a] :return: """ sc = (read("szenarien_w2s.xlsx") .pipe(start_pipeline) .pipe(NaNtoZero) .pipe(format_df) .pipe(convert_PJ_to_GWH) ) return sc
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def test_download_cache_hit(mocker): """Check that download is not repeated on cache hit.""" data = b"Hello, world" data_checksum = "4ae7c3b6ac0beff671efa8cf57386151c06e58ca53a78d83f36107316cec125f" cached_path = cache_path(f"downloads/{data_checksum}") # Tidy up from a previous test, if applicable...
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import transformers import torch import tqdm def eval_two_span( val_data: data.DataLoader, model: transformers.PreTrainedModel, loss_func: nn.modules.loss._Loss, dev: torch.device=None ) -> float: """Evaluate a two span edge probing model. Args: val_data: valid...
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import csv def get_column(path, c=0, r=1, sep='\t'): """ extracts column specified by column index assumes that first row as a header """ try: reader = csv.reader(open(path, "r"), delimiter=sep) return [row[c] for row in reader] [r :] except IOError: print('list_rows: f...
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def part2(lines): """ >>> part2(load_example(__file__, "24")) 19 """ return run(lines, Part2)
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def add_md_padding(data, endian='big'): """Merkle-Damgard padding Args: data(string) Returns: data+padding(string) """ size = len(data) & 0x3f # len_in_bytes % 64 if size < 56: size = 56 - size else: size = 120 - size p = bytes(b'\x80') + bytes(b'\x00'*63) p = p[:si...
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def list_fridge(): """ List all items in the frigde. :return: dict with all items and amounts :rtype: dict """ return MOCK_FRIDGE
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def evaluate_hessian_val(A, point, direction): """ Returns the value of Hessian function in the given direction. """ hess_p = (A - np.diag((A.dot(point)).dot(point.T))).dot(direction) return np.sum(hess_p * direction)
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import numpy def frustrated_loop(graph, num_cycles, R=float('inf'), cycle_predicates=tuple(), max_failed_cycles=100, planted_solution=None, seed=None): """Generate a frustrated-loop problem. A generic frustrated-loop (FL) problem is a sum of Hamiltonians, each generated from a single ...
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def _projection_unit_simplex(x: jnp.ndarray) -> jnp.ndarray: """Projection onto the unit simplex.""" s = 1.0 n_features = x.shape[0] u = jnp.sort(x)[::-1] cssv = jnp.cumsum(u) - s ind = jnp.arange(n_features) + 1 cond = u - cssv / ind > 0 idx = jnp.count_nonzero(cond) threshold = cssv[idx - 1] / idx.a...
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def channel_id_str_to_bytes(channel_id_str): """ Args: channel_id_str: string representation of channel id Returns: bytes representation of channel id """ assert type(channel_id_str) in [str, bytes] if isinstance(channel_id_str, bytes): return channel_id_str qid_byte...
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from typing import Optional def compiled( model: tf.keras.Model, loss=None, metrics=None, optimizer=None, run_eagerly: Optional[bool] = None, # steps_per_execution: Optional[int] = None, ) -> tf.keras.Model: """Mutate model in-place by compiling and return the model for convenience.""" ...
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def vtkVariantExtract(v, t=None): """ Extract the specified value type from the vtkVariant, where the type is in the following format: 'int', 'unsigned int', etc. for numeric types, and 'string' or 'unicode string' for strings. You can also use an integer VTK type constant for the type. Set the ty...
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import collections import itertools def _create_region_groups(const_regions, psvs, genome, max_dist=1000): """ Groups closeby const regions if they have the same CN even if there is a region with a different CN between them. """ psv_ix = 0 n_psvs = len(psvs) # Key: copy_num, value: list of Pl...
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import imp def _LoadConfigModule(name: str, path: str): """Loads a script from external file specified by path. Unprefixed path is looked for in the current working directory using regular file open operation. This should work with relative config paths. Args: name: Name of the new module. path: Pat...
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def _parse_icq(fileobj): """Parse a International Comet Quarterly (ICQ) format file.""" df = pd.read_fwf(fileobj, colspecs=list(ICQ_COLUMNS.values()), names=ICQ_COLUMNS.keys(), header=None) return df
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def IperfTCP(target_src, target_dst, dst, length, window=None): """Convenience method for starting a TCP IperfSet. See IperfSet for more details. Args: target_src: A single host or list of hosts. target_dst: A single host or list of hosts (1:1 with target_src). dst: A single address/hostname or a li...
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def plot_riemann(states, s, riemann_eval, t, fig=None, color='b', layout='horizontal',conserved_variables=None): """ Take an array of states and speeds s and plot the solution at time t. For rarefaction waves, the corresponding entry in s should be tuple of two values, which are the wave speeds that bou...
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def find_in_list(list_one, list_two): """Find and return an element from list_one that is in list_two, or None otherwise.""" for element in list_one: if element in list_two: return element return None
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from typing import List from typing import Tuple def getElementById(idName: str, fileName: str) -> List[Tuple[int, str]]: """Returns first matching tag from an HTML/XML document""" nonN: List[str] = [] with open(fileName, "r+") as f: html: List[str] = f.readlines() for line in html: ...
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def skip_after(timeout: int or float): """ Creates an async pool with an associated timeout, but without raising a TooSlowError exception. The pool is simply cancelled and code execution moves on """ assert timeout > 0, "The timeout must be greater than 0" mgr = TaskManager(timeout, False) ...
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from pathlib import Path def read_peak_correlations(file_name): """ Read in the custom peak correlation Excel file provided by JAX. """ df = pd.DataFrame(pd.read_excel(file_name)) tab = Table.from_pandas(df) #read(file_name, format="ascii.csv") # tab.rename_column('\ufeffMm_chr', 'Mm_chr') ...
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import torch def sample(model, block_size, x, steps, temperature=1.0, sample=False, top_k=None): """ take a conditioning sequence of indices in x (of shape (b,t)) and predict the next token in the sequence, feeding the predictions back into the model each time. Clearly the sampling has quadratic compl...
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def explore_result_coverage_detail(): """Get coverage detail info Get coverage detail info loading from disk :return: a list, each element is dict map in list, if coverage file not exist, will return [],for example: [{ "fileName": "1.jpg", "sampleNum": 5, ...
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def gradient_dx(fx: tf.Tensor) -> tf.Tensor: """ Function to calculate gradients on x-axis of a 3D tensor using central finite difference. It moves the tensor along axis 1 to calculate the approximate gradient, the x axis, dx[i] = (x[i+1] - x[i-1]) / 2 :param fx: shape = (batch, m_dim1, m_dim2, m_d...
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def _real_freq_filter(rfft_signal, filters): """Helper function to apply a full filterbank to a rfft signal """ nr = rfft_signal.shape[0] subbands = filters[:, :nr] * rfft_signal return subbands
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def _strip_extension(name, ext): """ Remove trailing extension from name. """ ext_len = len(ext) if name[-ext_len:] == ext: name = name[:-ext_len] return name
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def node_clique_number(G,nodes=None,cliques=None): """ Returns the size of the largest maximal clique containing each given node. Returns a single or list depending on input nodes. Optional list of cliques can be input if already computed. """ if cliques is None: if nodes is not None: ...
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def str_to_list(s): # type: (str) -> List[str] """Convert string to list.""" if isinstance(s, str): return s.split(',') return s
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import torch def get_online_seed_from_cam_sal_seg(cam: torch.Tensor, sal: torch.Tensor, seg_prob: torch.Tensor, cls_in_label: torch.Tensor, cam_thresh: float, sal_thresh: float, ignore_label: int) -> torch.Tensor: """Get online seed from CA...
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import inspect def check_parameter(**kwargs): """Check dtype of the function's parameters. Parameters ---------- kwargs : Type or Tuple[Type] Map of each parameter with its expected dtype. Returns ------- _ : bool Assert if the array is well formatted. """ # get ...
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def part1(data): """ >>> part1(read_input()) 192 """ return sum(is_valid(passport) for passport in data)
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def minimize(func, x0, args=(), *, method, tol=None, options=None): """Minimization of scalar function of one or more variables. This API for this function matches SciPy with some minor deviations: - Gradients of ``fun`` are calculated automatically using MindSpore's autodiff support when required. ...
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from mxnet.gluon.model_zoo.vision import get_model def get_network(name, batch_size): """Get the symbol definition and random weight of a network""" dtype = 'float32' input_shape = (batch_size, 3, 224, 224) output_shape = (batch_size, 1000) if "resnet" in name: n_layer = int(name.split("-...
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from typing import Callable from typing import Dict def web_template() -> Callable[[Request, str], _TemplateResponse]: """Create a dependency which may be injected into a FastAPI app.""" def _template(request: Request, page: str, context: Dict = {}) -> _TemplateResponse: """Create a template from a r...
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def core_number(G): """Returns the core number for each vertex. A k-core is a maximal subgraph that contains nodes of degree k or more. The core number of a node is the largest value k of a k-core containing that node. Parameters ---------- G : NetworkX graph A graph or directed gr...
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def create_meeting( client, name: str, description: str = None, title: str = None, duration: int = 60000, # duration in mins ~6 weeks ): """Create a Zoom Meeting.""" body = { "topic": title if title else f"Situation Room for {name}", "agenda": description if description else...
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def hours(datetime): """ Returns the hours component for the given datetime value, in local time. """ return datetime.hour()
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def compute_checksum(filename): """Computes the MD5 checksum of the contents of a file. filename: string """ cmd = 'md5sum ' + filename return pipe(cmd)
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def clean_text( raw_text, fix_unicode=True, to_ascii=False, lower=True, no_line_breaks=True, no_urls=True, no_emails=True, no_phone_numbers=True, no_numbers=False, no_digits=False, no_currency_symbols=True, no_punct=False, ...
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def _get_s3_provider(): """ Gets S3 Config Provider :return: Instance of S3ConfigProvider :rtype: S3ConfigProvider """ return S3ConfigProvider( bucket=CONFIG_PROVIDERS['s3']['bucket'], config_base=CONFIG_PROVIDERS['s3']['base'] )
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def is_path_fully_cached(path): """Returns true if all the bytes of the path are cached, false otherwise""" rc, stdout, stderr = exec_process("hdfs cacheadmin -listDirectives -stats -path %s" % path) assert rc == 0 caching_stats = stdout.strip("\n").split("\n")[-1].split() # Compare BYTES_NEEDED and BYTES_CAC...
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def find_camera_tracking_pts_topics(): """ Returns list of all tracking_pts topics associated with a camera """ topic_list = find_topics_w_ending('tracking_pts') topic_list = [topic for topic in topic_list if 'camera' in topic.split('/')] return topic_list
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def get_batch_size(dataset: tf.data.Dataset, optimization_batch_size: int = BATCH_AUTO_TUNE) -> int: """Computes optimization batch size for processing steps in batches. Args: dataset: episodes or steps dataset. optimization_batch_size: user-provided hint for the batch size. Returns: ...
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def get_uuid_from_url(url: str) -> str: """ Strip the URL from the string. Returns the UUID. """ return url.split('/')[-1]
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def texFrac(frac): """ Tex render for Fractions""" return ["\\frac{" , str(frac._num) , "}{" , str(frac._denom) , "}"]
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def repeated_hindsight_gumbel_estimation( universe, probabilities, values, num_samples, normalize, repetitions): """Uses Hindsight Gumbel Estimation multiple times with different Gumbels.""" # Use the same samples for each repetition! results = ppswor_samples(universe, probabilities, num_samples) all_sampl...
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def get_progress_string(tag, epoch, minibatch, nbatches, cost, time, blockchar=u'\u2588'): """ Generate a progress bar string. Arguments: tag (string): Label to print before the bar (i.e. Train, Valid, Test ) epoch (int): current epoch to display minibatch (i...
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def calcRingCentroidNormal(atomCoords): """ extract aromatic ring geometric info from a numpy array """ a1 = atomCoords[0] a2 = atomCoords[1] a3 = atomCoords[2] centroid = averageCoords(atomCoords) plane = calcPlane(a1, a2, a3) v1 = vector(centroid, a1) v2 = vector(centroid, a2) nor...
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import copy def flip_horizontal(original: Image) -> Image: """Written by: Cameron Legree Student No. 101153496 Returns a copy of an image flipped along a horiontal line centered in the image. orginal_image must be loaded prior to passing it through the function. >>>flip_horizontal(miss_sull...
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from typing import List from typing import Optional def span_to_label(tokens: List[str], labeled_spans: dict, scheme: Optional[str] = 'BIO') -> List[str]: """ Convert spans to label :param tokens: a list of tokens :param labeled_spans: a list of tuples (start_idx, e...
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def expand_markup(abbr: str, config: Config) -> str: """ Expands given *markup* abbreviation (e.g. regular Emmet abbreviation that produces structured output like HTML) and outputs it according to options provided in config """ return stringify_markup(markup_abbreviation(abbr, config), config)
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def withinStdDevRange(a, b): """Returns the percent of samples within the std deviation range a, b""" if b < a: return 0; if a < 0: if b < 0: return (withinStdDev(-a) - withinStdDev(-b)) / 2; else: return (withinStdDev(-a) + withinStdDev(b)) / 2; else: return (withinStdDev(b) - with...
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import logging import requests def commit_email(): """Receive web hook from github and generate email.""" # Only look at push events. Ignore the rest. event = flask.request.headers['x-github-event'] logging.info('Received "{0}" event from github.'.format(event)) if event != 'push': loggin...
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def unimodal_converter(data): """ Returns ground truth labels when data is split modally to text and image data: dataframe object """ for column in ["string", "numeric"]: unimodal_image, unimodal_text = [], [] for i in range(len(data)): temp_val = data.loc...
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def convert_ids_to_tokens(inv_vocab, ids): """Converts a sequence of ids into tokens using the vocab.""" output = [] for item in ids: output.append(inv_vocab[item]) return output
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import aiohttp async def remove_device( ws_client: aiohttp.ClientWebSocketResponse, device_id: str, config_entry_id: str ) -> bool: """Remove config entry from a device.""" await ws_client.send_json( { "id": 1, "type": "config/device_registry/remove_config_entry", ...
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def build_senator_details(details): """Build the test data for a senator.""" data = build_us_details(details) data['terms'][-1]['state_rank'] = details[5] data['terms'][-1]['class'] = details[6] data['terms'][-1]['url'] = details[7] data['terms'][-1]['phone'] = details[8] return data
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import array def normalize(y: ndarray, max_value: float) -> ndarray: """ Performs normalization of given values :param y: ndarray - numpy array of histogram values derived from TCSPC method :param max_value: float - maximal value in given data :return: ndarray - numpy array of normalized histogram...
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import logging import pickle import time def load_obj(path): """ return the python object saved in the given path :param path: the path to be loaded :return: """ logger = logging.getLogger("load_obj") retry_count = 3 while retry_count > 0: try: with open(path, 'rb'...
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def xgboost_data_preparation(validation_list: list, dataframe: pd.DataFrame, target: np.array, key: str): """ xgboost data preparing for training The function transforms the data from a Pandas dataframe format to a xgboost-compatible format. :param list validation_list: The list that contains the data the...
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