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def align_coefs(coefs, lag, verbose=False): """ coefs: n* lag x n. the i * lagth row of col k is the auto-coefficient of k on k # align the coefs: # split into same lag return: lag x n x n. the """ assert len(coefs.shape) == 2 assert coefs.shape[0] / lag == coefs.shape[1] n = coef...
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def calc_zq(qz, zp, zm, En, aa): """ function used in computing polar geodesic coordinates Parameters: qz (float) zp (float): polar root zm (float): polar root En (float): energy aa (float): spin Returns: zq (float) """ ktheta = (aa ** 2 * (1 - E...
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def equation_dw18(dbconn, speccode, biomassassign, dbh, ht): """ Equation form: ((a + b * dbh + c * (dbh ^ d))-(e + f * dbh + g * (dbh ^ h))) """ qstr = "SELECT a, b, c, d, e, f, g, h FROM VolBioCoeffs WHERE SpecCode = '%s'" % (biomassassign) c = dbconn.cursor() c.execute(qstr) coeffs = c.fetchone()...
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def denormalize(images, min_, max_): """scales image back to min_, max_ range""" return [((i + 1) / 2 * (max_ - min_)) + min_ for i in images]
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def update_config(config, args): """Update config by ArgumentParser Args: args: ArgumentParser contains options Return: config: updated config """ if args.cfg: _update_config_from_file(config, args.cfg) config.defrost() if args.dataset: config.DATA.DATASET = a...
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def update_or_create_variable(site, slug, date, value): """Update or create variable """ variable = None try: variable = Variable.objects.get(site=site, slug=slug) variable.update_value(date, value) variable.save() except Variable.DoesNotExist: LOGGER.info("Variable c...
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def version_is_locked(version): """ Determine if a version is locked """ return getattr(version, "versionlock", None)
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from datetime import datetime import platform def generate(request, recipient): """ Generate a test email. :param request: the current request :type request: pyramid.request.Request :param recipient: the recipient of the test email :type recipient: str :returns: a 4-element tuple contain...
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def pssm_scan(pwm, seqs, background_probs=[0.27, 0.23, 0.23, 0.27], pad_mode='median', n_jobs=10, verbose=True): """ """ def pwm2pssm(arr, background_probs): """Convert pwm array to pssm array pwm means that rows sum to one """ arr = arr / arr.sum(1, keepdims=True) ar...
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def build_orientation_img(d, mask): """ Args: d: [.., H, W, 8] mask: [..., H, W] """ y = np.expand_dims(mask, -1) cw = color_wheel did = np.argmax(d, -1) new_shape = [] for ss in xrange(len(y.shape) - 1): new_shape.append(y.shape[ss]) new_shape.append(3) c...
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def compute_projection_transforms(origins, transformer) -> np.ndarray: """ Convert vectors from one coordinate system to another. Unlike positions, this cannot be done with a simple pyproj call. We first need to set up a vector start and end point, convert those into the new coordinate system and th...
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def get_function_by_name(full_name): """ RETURN FUNCTION """ # IMPORT MODULE FOR HANDLER path = full_name.split(".") function_name = path[-1] path = ".".join(path[:-1]) constructor = None try: temp = __import__(path, globals(), locals(), [function_name], -1) output =...
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def get_app(endpoints): """ :param list(Endpoint) endpoints: Endpoints describing the mapper :rtype: aiohttp.web.Application :returns: an app configured as describes in endpoints """ app = web.Application(middlewares=[error_middleware]) async def on_startup(app): app['rabbitmq_conne...
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import copy def get_abbr_data(): """ Get a deep copy of the abbreviation map. Returns ------- :class:`dict` (:class:`str`, :class:`str`) A dictionary of the identifiers, the keys are the abbreviation. """ return copy.deepcopy(_glass_type_registry)
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from typing import Union def _load_data_input_from_file(path: str, **further_parse_args) -> Union[pd.DataFrame, list]: """Load and process the input data according the input file format.""" if path.endswith(CSV): return from_dataframe_file(path, CSV) elif path.endswith(XLS_FORMATS): retur...
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def generate_ceiling_json(conf: ConfigManager, polyline, room_id: str, multiplication_factor: float) -> dict: """ Generate a json describing a ceiling. :param conf: ConfigManager :param polyline: Outline of the room :param room_id: id of the room :param multiplication_factor: Scale factor to rea...
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def _compute_edge_transforms(node_states, depth, num_transforms, ignore_zero=True, name="transform"): """Helper function that computes transformation for keys and values. Let B be the number of batch...
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def optimize(model, **kwargs): """Removes LogSoftmax and positive scaling (Mul) layers from the network because they do not change the prediction. Args: model (NeuralNet): The NeuralNet model. Returns: NeuralNet: The NeuralNet model with removed layers. """ while( (isinstance(model...
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import logging def fetch_run(workspace: Workspace, run_recovery_id: str) -> Run: """ Finds an existing run in an experiment, based on a recovery ID that contains the experiment ID and the actual RunId. The run can be specified either in the experiment_name:run_id format, or just the run_id. :param wo...
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def mono_anal(y, fs, param=None): """Run pyin on an audio signal y. Parameters ---------- y : np.array audio signal fs : float audio sample rate param : dict default=None threshdistr : int, default=2 Yin threshold distribution identifier. - 0 ...
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def format_dict(_dict, tidy=True): """ This function format a dict. If the main dict or a deep dict has only on element {"col_name":{0.5: 200}} we get 200 :param _dict: dict to be formatted :param tidy: :return: """ if tidy is True: levels = 2 while (levels>=0): ...
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def get_crc24(data: str) -> dict: """ Implementation of the CRC-24 algorithm from OpenPGP. Returns the CRC-24 checksum value in decimal and hexadecimal format. """ data = bytearray(data.encode('utf-8')) crc = 0x00b704ce for byte in data: crc = (CRC24_TABLE[((crc >> 16) ^ byte) & 0xff...
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def pfirst(*args, **kwargs): """ For each occurrence of this function in source code, print only on the first call. e.g. >>> for n in [1, 2]: ... _ = pfirst(n * 10) ... _ = pfirst(n * 100) 10 100 """ stack = _getstack() if not stack in pfirst.seen_stacktraces: pf...
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import gzip import itertools def read_obo(file): """ read ontology from file :param file: file path of file handle """ G = nx.DiGraph() if isinstance(file, str): if file.endswith('.gz'): f = gzip.open(file, 'rt') else: f = open(file) we_opened_file ...
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def _GetColocationNames(op): """Returns names of the ops that `op` should be colocated with.""" colocation_names = [] try: class_values = op.get_attr('_class') except ValueError: # No _class attr return for val in class_values: val = compat.as_str(val) if val.startswith('loc:@'): col...
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def _current_trace(): """Returns the innermost Jax tracer.""" tracers = _masters() if tracers: return tracers[-1] return None
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def tailor_queries(query_item, query_target): """ This substitutes common parameters for values from the script. Later, this will be a data driven exercise. """ replacements = dict() replacements['{{deployment}}'] = query_target.split('_')[0] replacements['{{org_id}}'] = query_target.split('...
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def enlarge(image, size, axis=1, efunc=energy_function, cfunc=compute_cost, dfunc=duplicate_seam, bfunc=backtrack_seam, rfunc=remove_seam): """Enlarges the size of the image by duplicating the low energy seams. We start by getting the k seams to duplicate through function find_seams. We iterate through the...
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import random def get_answer(random_country_index): """ Function that randomly decides the type of the answer (either LANGUAGES or CAPITALS). It also accesses the dictionary using the randomly generated index and it fetches the corresponding item from it.""" random_question = random.randint(1,10) ...
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def Rx(r): """Construct a rotation matrix around X-axis.""" return _Rx(np.cos(r), np.sin(r))
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from datetime import datetime def dtime(dstr): """Convert datetime strings to datetime instances.""" if isinstance(dstr, bytes): dstr = dstr.decode() return datetime.datetime.strptime(dstr, fs_fmt)
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def _create_split(last_key, next_key, query): """Create a new {@link Query} given the query and range.. Args: last_key: the previous key. If null then assumed to be the beginning. next_key: the next key. If null then assumed to be the end. query: the desired query. Returns: A split query with fe...
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import struct def compute_checksum(message): """Calculates the 16-bit one's complement of the one's complement sum of a given message.""" # If the message length isn't a multiple of 2 bytes, we pad with # zeros if len(message) % 2: message += struct.pack('x') # We build our blocks to...
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def mockup_return(*args, **kwargs): """Mockup to replace regular functions for error injection.""" return False
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def publish_shelter(shelter_id=None): """ Publish/Unpublish a shelter. """ shelter = Shelter.query.filter(Shelter.id == shelter_id).first() if shelter: shelter.is_published = request.args.get('publish', not shelter.is_published) db.sess...
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from datetime import datetime def convert_utc_to_pdt(time_of_interest: datetime) -> datetime: """ Get the datetime in Pacific Daylight Timezone (PDT) : UTC-7 given a datetime in UTC timezone """ return time_of_interest.astimezone(timezone(offset=timedelta(hours=PDT_UTC_OFFSET)))
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def format_input(param): """Return a string with all the inputs property formatted. """ tmp1 = ' {type} {var}{ctor}; XC_LI_.load({var});\n' tmp2 = ' {type} {var}{ctor}; XC_LI_.load({var}, {sample});\n' inputs = '' for par in param: if 'sample' in par: inputs += tmp2.format(...
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def example(method): """Performs a short example run of the retrievals using local machine. Parameters ---------- method : str The method to use to perform the atmopsheric retrieval; can either be ``multinest`` or ``emcee`` """ # Ensure that the method parameter is valid ...
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def patient_sur(N, t, survival, show=False): """ generate N patient survival time from survival function """ y_n = np.random.uniform(0, 1.0, N) x_n = np.interp(1 - y_n, 1 - survival, t) if show: plt.plot(x_n, y_n, '.') plt.plot(t, survival) plt.xlabel('Time') plt.ylabel...
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def get_git_project_files(): """Retrieve a list of all non-ignored files, including untracked files, excluding deleted files. :return: sorted list of git project files :rtype: :class:`list` """ cached_and_untracked_files = git_ls_files( '--cached', # All files cached in the index ...
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def add_codes(err_cls): """Add error codes to string messages via class attribute names.""" class ErrorsWithCodes(object): def __getattribute__(self, code): msg = getattr(err_cls, code) return "[{code}] {msg}".format(code=code, msg=msg) return ErrorsWithCodes()
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from typing import Dict import torch def get_token_ids_from_text_field_tensors( text_field_tensors: Dict[str, Dict[str, torch.Tensor]], ) -> torch.Tensor: """ Our `TextFieldTensors` are complex output structures, because they try to handle a lot of potential variation. Sometimes, you just want to grab...
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def ping(): """Determine if the container is working and healthy. In this sample container, we declare it healthy if we can load the model successfully.""" global clf if clf is None: clf = ScoringService.get_model() status = 200 return flask.Response(response='\n', status=status, mimetyp...
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import math def s_linear(y, a): """Transformation function.""" assert y >= 0.0 assert y <= 1.0 assert a > 0.0 assert a < 1.0 return correct_to_01(abs(y - a) / abs(math.floor(a - y) + a))
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def posts_from_rest_files(fnames): """ Read posts from ReST files """ ret = [] for parts, docinfo in _parse_rest_files(fnames): page = posts.Post(title=parts['title'], contents=parts['body'], slug=docinfo['slug'], ...
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async def async_setup(hass: HomeAssistantType, config: ConfigType) -> bool: """Set up configured Weatherbit.""" # We allow setup only through config flow type of config return True
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def _validate_licence(data: dict) -> dict: """Validates that a Licence exists and that the Goods exist on that Licence""" serializer = HMRCIntegrationUsageUpdateLicenceSerializer(data=data) if not serializer.is_valid(): data["errors"] = serializer.errors return data try: licen...
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def extend_bed(bed, bp, direction='both'): """Extend each interval in bed file with specified basepairs. If bp is a list, each interval will be extended bp[0] toward upstream, and bp[1] toward downstream. Note: Be careful! This method does not deal with strandedness of the interval. :param (pybedt...
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def chem_potential_water_t_exact(SA, t, p): """ Calculates the chemical potential of water in seawater. Parameters ---------- SA : array-like Absolute Salinity, g/kg t : array-like In-situ temperature (ITS-90), degrees C p : array-like Sea pressure (absolute pressure...
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import random def generate_neg_edges(G, num_neg_edges): """ Given a graph, sample negative edges from the complement graph. :param G: graph :param num_neg_edges: number of edges to sample :returns neg_edges: the sampled edges """ G_comp = nx.complement(G) neg_edges = random.sample(G_co...
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def bolster_missing_time_periods(filter_time_periods, queryset, date_range_type, columns): """ Given the following, generate a list of dict results split by fiscal years/quarters/months Args: filter_time_periods: list of time_period objects usually provided by filters - {'start_...
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import concurrent.futures import datetime def screenStocks_Multiproccesed(ticker_list, strategy, last_days): """ Screens stock list with strategy. Returns list of [tickers, last buy dates, stock performance stats] if last buy date of stock is within last_days This particular function is multiproccesed wit...
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def get_cached_locale(locale): """ Gets the given locale from cache if present. Parameters ---------- locale : `str` The local to get from cache. Returns ------- locale : `str` """ return LOCALES.setdefault(locale, locale)
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def _IsTpuTraining(p): """Whether we should create embedding tables and run lookup on tpu.""" return not p.is_inference and py_utils.use_tpu()
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def get_first_index_where(array, criterion, value): """get the first index where array fulfills a criterion w.r.t. value, where criterion may be "geq" (greater equal), "gt" (greater than), "leq" (less equal) or "lt" (less than). If criterion is met nowhere, function returns len(array) Args: ...
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from typing import Tuple def score_per_player(df: pd.DataFrame, selected_player: str) -> Tuple[pd.DataFrame, pd.DataFrame]: """Plot score per player Parameters: ----------- selected_game_df : pandas.core.frame.DataFrame Data for the selected game selected_player : s...
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def GetXcodeDeveloperDirectory(): """Returns the active developer directory as reported by 'xcode-select -p'. Returns None if none is set.""" if not MacOS(): return None return GetCommandOutput("xcode-select -p")
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def norm(a, b): """ Return a unit normal to a and b. """ k = np.cross(a, b) return k / np.linalg.norm(k)
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def logical_factor_rules() -> FrozenDict: """Logical factor rules for Mixture of Experts.""" rules = flax_core.unfreeze(adafactor.standard_logical_factor_rules()) rules.update({ 'expert': FactorDim.BATCH, 'expert_mlp': FactorDim.COLUMN, 'unmodeled': FactorDim.NONE }) return flax_core.freeze(...
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from typing import Sequence from typing import Optional from typing import Union def row_rounder(row: Sequence[str], line: Optional[int], has_total_col: bool = False) -> Sequence[Union[str, float]]: """ To convert the data in a CSV row to percentages and then smartly round the percentages to no decimal wi...
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def three_blocks_avgpooling(img_width, img_height, img_channels, output_dim): """ Define model architecture. # Arguments img_width: Target image widht. img_height: Target image height. img_channels: Target image channels. output_dim: Dimension of model output. # ...
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import re def parse_life_105(file): """Parse a Life 1.05 file, returning a tuple: positions: list of (x,y) co-ordinates comments: all comments in file, as a list of strings, one per line. """ lines = file.split("\n") comments = [] positions = [] ox, oy = 0, 0 x, y = ox, oy...
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def save_vertex_attributes(mesh): """ Saves the boundary and cut attributes that are on the mesh on a dictionary. """ v_attributes_dict = {'boundary_1': [], 'boundary_2': [], 'cut': {}} cut_indices = [] for vkey, data in mesh.vertices(data=True): cut_index = data['cut'] if cut_i...
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import traceback def server_error_to_message(e, error_statement, error_detail, rows = None): """サーバーエラーレスポンス(メッセージ付き) server error response with message Args: e (Exception): 例外 exception error_statement (str): エラー情報(処理内容)error info. process contents error_detail (str): エラー情報詳細 error d...
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def eliminate_nonvalid_coords(coords, mapshape): """ Eliminate nonvalid indices Args: coords(set of tuples): input set of positions h(int): height w(int): width Returns: set of valid coordinates """ h, w = mapshape valid = [] for j, i in coords: if j < 0 or j >= h:...
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from typing import Sequence from typing import Optional def construct_1d_ndarray_preserving_na( values: Sequence, dtype: Optional[DtypeObj] = None, copy: bool = False ) -> np.ndarray: """ Construct a new ndarray, coercing `values` to `dtype`, preserving NA. Parameters ---------- values : Sequ...
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def getPosUntilRoot(object): """ Go through the hierarchy of the object until reaching the top level, increment the position to get the transformation due to parents. @type object: hostObject @param object: the object @rtype: list @return: the cumulative translation along the ...
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import tqdm def build_embedding_matrix( embedding_model: gensim.models.keyedvectors.KeyedVectors, embedding_dim, vocab) -> np.ndarray: """ Builds the embedding matrix. Parameters ---------- embedding_model : gensim.models.keyedvectors.KeyedVectors Embedding model. ...
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def calls_fixture(hass): """Track calls to a mock service.""" return async_mock_service(hass, "test", "automation")
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def load_yaml(yaml_file, template_params=None, return_config_str=False): """ load_yaml_str will take in a string that has the correct yaml formatting and generate classes or types according to the configuration in the yaml. Example: params = {'SOURCE_PATH': '/tmp/source', 'AGE': 30} obj...
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def bprp_to_bv(bprp): """ Calculate a B-V color from a G_BP - G_RP color. Poor fit at large and small bp-rp. (Especially bad for low-mass stars). """ p = [-0.0334115504231673, 0.3754200727545447, -1.4691791496336342, 2.209433533403669, -0.39641699367657274, 0.14752490961352926] retur...
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def have_flirt(): """ Return True if we can call flirt without error Relies on the fact that flirt produces text on stdout when called with no arguments """ p = Popen('flirt', stdout=PIPE, stderr=PIPE, shell=True) stdout, stderr = p.communicate() return stdout != ''
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def effective_request_host(request): """Return the effective request-host, as defined by RFC 2965.""" return eff_request_host(request)[1]
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import ast import requests def get_nginx_generation_value(host) -> int: """ Send request to /api/api_version/nginx and parse the response. :param host: :return: 'generation' value """ resp = ast.literal_eval(requests.get(f"{host}/api/{NGINX_API_VERSION}/nginx").text) return resp['generati...
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def get_job_by_id(job_id): # noqa: E501 """Find my job by Id For valid response try integer Ids with value &gt;&#x3D; 1 and &lt;&#x3D; 1000.\\ \\ Other values will generated exceptions # noqa: E501 :param job_id: Id of job to be fetched :type job_id: str :rtype: Job """ job = q.fetch_job...
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def delete_client(client_id): """ Delete a client --- tags: - clients parameters: - name: client_id in: path type: integer example: 1 operationId: deleteClient produces: - application/json schemes: ['http', 'https'] responses: 200: ...
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def get_textregion_avg_line_distance(text_region: PageXMLTextRegion, avg_type: str = "macro") -> np.float: """Returns the median distance between subsequent lines in a textregion object. If the textregion contains smaller textregions, it only considers line distances bet...
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import time def dns_lookup(qname, **kwargs): """Function to perform DNS lookup queries. Args: qname (str) : The Domain name that you would like perform a DNS lookup for. **ns (str/list): The nameserver to use when querying the provided domain. ...
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def get_aperture_fluxes(data, ap_radius): """ Make an aperture for every pixel, and do aperture photometry at all of them. :param data: A 2D numpy array with the data to do photometry on :ap_radius: The radius of the aperture to use. """ # Get all coordinates nx, ny = data.shape xx, yy...
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def _trash_ratio(text): """ Return ratio of non-common symbols. """ trash_count = 0 for char in text: if char in list(u'.\'"+-!?()[]{}*+@#$%^&_=|/\\'): trash_count += 1 return trash_count / float(len(text))
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def compute_graph_nn_2(xyz, k_nn1, k_nn2): """compute simulteneoulsy 2 knn structures only saves target for knn2 assumption : knn1 <= knn2""" assert k_nn1 <= k_nn2, "knn1 must be smaller than knn2" num_ver = xyz.shape[0] #compute nearest neighbors graph = dict([("is_nn", True)]) nn = Nea...
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def index_of_spaces(text): """ Given text, return all space indices @param text is the string to analyze @returns a list of integers representing the indices """ res = [] for i in range(0, len(text)): if text[i] == ' ': res.append(i) return res
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def decrypt_story(): """Load the file store.txt, and decript it""" return CiphertextMessage(get_story_string()).decrypt_message()
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def aaa_get_kvm_launch_url(in_cookie, in_ipv4): """ Auto-generated UCS XML API Method. """ method = ExternalMethod("AaaGetKVMLaunchUrl") method.in_cookie = in_cookie method.in_ipv4 = in_ipv4 xml_request = method.to_xml(option=WriteXmlOption.DIRTY) return xml_request
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def get_default_hparams(): """ Return default hyper-parameters """ params_dict = { # Experiment Params: 'is_training': True, # train mode (relevant only for accelerated LSTM mode) 'data_set': 'cat', # datasets to train on 'epochs': 50, # how many times to go over the full trai...
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def _get_mf_picks(info, int_order, ext_order, ignore_ref=False, verbose=None): """Pick types for Maxwell filtering.""" # Check for T1/T2 mag types mag_inds_T1T2 = _get_T1T2_mag_inds(info) if len(mag_inds_T1T2) > 0: warn('%d T1/T2 magnetometer channel types found. If using SSS, it is ' ...
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def bbcMicro_partPhonemeCount(pronunc): """Returns the number of 'part phonemes' (at least that's what I'm calling them) for the BBC Micro phonemes in pronunc. The *SPEAK command cannot take more than 117 part-phonemes at a time before saying "Line too long", and in some cases it takes less than that (I'm not sure...
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def build_MLP(X, y, layers=(50, 25, 15), dropout=0.1, activation='relu', out_act='softmax'): """Utility function for building a Multi-layer perceptron. Args: - X: numpy array, input to the model. - y: numpy array, target of the model. - layers: tuple of ints, number of hid...
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def idc(funcname): """获取所属机房逻辑""" try: custom_args = handle(custom_param_file,"custom_args") return custom_args[funcname] except Exception as e: print "[error]:",e return None
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import yaml def format_bundle(bundle): """ Converts a bundle object into a push-ready bundle by changing list values of 'customResourceDefinitions', 'clusterServiceVersions', and 'packages' into stringified yaml literals. This format is required by the Marketplace backend. :param bundle: A b...
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from typing import Optional from typing import Tuple def es_client( host: Text, port: int = 9200, url_prefix: Optional[Text] = None, username: Optional[Text] = None, password: Optional[Text] = None, timeout: int = 180) -> elasticsearch.client.Elasticsearch: """ Elas...
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def insert_at_midpoint(item, iterable): """ Inserts an item at the index of the midpoint of a list Returns that list with the item inserted """ midpoint = int(len(iterable) / 2) iterable.insert(midpoint, item) return iterable
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def upgrade(sql_connection, version=None): """ Upgrade the database's current migration level :param sql_connection: sqlalchemy connection string :param version: version to upgrade (defaults to latest) :retval version number """ db_version(sql_connection) # Ensure db is under migration con...
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def unwrap_if_necessary(graph_node: PerceptionGraphNode) -> UnwrappedPerceptionGraphNode: """ Some nodes might be wrapped in tuples together with IDs to prevent them from being compared equal and collapsed in perception graphs. This method removes that wrapping. """ if isinstance(graph_node, tup...
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def func(p, data): """ Calculate z = (x/maj)**2 + (y/min)**2 Note that z = 1 is an ellipse """ x0, y0, major, minor, pa = p x, y = data pa = radians(pa) sinP = sin(-pa) cosP = cos(-pa) xt = x - x0 yt = y - y0 xr = xt * cosP - yt * sinP yr = xt * sinP + yt * cosP re...
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import string def urlEncode(s): """ Returns the encoded version of the given string, safe for using as a URL. """ return string.join(map(lambda c: _urlEncode[c], list(s)), '')
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def euclideanDistance(data_points, query_instance): """ Calculate euclidean distance :param data_points: data points of a given dataset :param query_instance: instance of a dataset for which the distance matrix will be computed for :return: distance value """ return np.sqrt(((data_points -...
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from typing import Tuple def _move_jackknife_sample_id_to_value( slice_key: slicer.SliceKeyType, sample: metric_types.MetricsDict ) -> Tuple[slicer.SliceKeyType, metric_types.MetricsDict]: """Moves the jackknife sample ID from the key to value. Args: slice_key: The slice key which contains the sample_id....
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def dfanet(classes=19, **kwargs): """ Args: pretrained (bool): If True, returns a model pre-trained on ImageNet """ return xceptionAx3(classes, **kwargs)
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def experiment_fn(run_config: RunConfig, params: HParams): """The experiment function, provided to learn_runner. :param run_config: :param params: :return: """ run_config = run_config.replace(save_checkpoints_steps=params.min_eval_frequency) estimator = tf.estimator.Estimator( mod...
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