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def maxpool_to_same_maxpool(module): """Turn All MaxPool2d into SameMaxPool2d to match TF padding""" module_output = module if isinstance(module, nn.MaxPool2d): module_output = MaxPool2dSamePadding( kernel_size=module.kernel_size, stride=module.stride, padding=0, ...
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def double_wedge_filter(sinogram, center=0, sino_type="180", iteration=5, mask=None, ratio=1.0, pad=250): """ Apply double-wedge filter to a sinogram image (Ref. [1]). Parameters ---------- sinogram : array_like 2D array. 180-degree sinogram or 360-degree sinogram. ...
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def gather_data_to_plot(wells, df): """ Given a well ID, plot the associated data, pull out treatments. Pull in dataframe of all the data. """ data_to_plot = [] error_to_plot = [] legend = [] for well in wells: data_to_plot.append(df.loc[well, '600_averaged']) error_to_pl...
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def create_data_frame_sfem(data_sfem, strategy_order): """ Create the DataFrame that will be used for the type classification. Args: data_sfem (DataFrame): Individual level data that is already subset to the correct level. strategy_order (list): Name of all st...
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import re def is_ignored(filename, ignores): """ Checks if the filename matches any of the ignored keywords :param filename: The filename to check :type filename: `str` :param ignores: List of regex paths to ignore. Can be none :type ignores: `list` of `str` or...
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import requests def token(username: str, password: str, auth_url: str = 'https://api.sonetel.com/SonetelAuth/beta/oauth/token', refresh: str = "no", grant_type: str = "password", refresh_token: str = None) -> dict: """ Create an API access token from the user's Sonetel email address and password. ...
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async def present( hub, ctx, name, resource_group, sku, kind, location, custom_domain=None, encryption=None, network_rule_set=None, access_tier=None, https_traffic_only=None, is_hns_enabled=None, tags=None, connection_auth=None, **kwargs, ): """ .....
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def check_transaction_threw(client, transaction_hash): """Check if the transaction threw/reverted or if it executed properly Returns None in case of success and the transaction receipt if the transaction's status indicator is 0x0. """ encoded_transaction = data_encoder(transaction_hash.decode(...
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def boldReplacements(tex): """ SPECIFIC TO shmem_reductions: Replace the Latex command: "\\textbf{<NAME>} \\newline <text> <code> \\newline...\\bigskip" --NAME will the title of a new section header with <text> as the immediate content. -- <code> will be replaced as normal (See function ...
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def stop_program(): """Small function to ask for input and stop if needed """ ok = input("Press S to Stop, and any other key to continue...\n") if ok in ["S", "s"]: return True return False
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def rotate(n): """ Rotate 180 the binary bit string of n and convert to integer """ bits = "{0:b}".format(n) return int(bits[::-1], 2)
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def fixture_list_arg(): """Test for the correct stdout. Output in the tests should match what this returns """ def list_arg(*profiles): _string = "" for profile in profiles: _string += ( f"[{profile}]\n" f"reponame = {HOST}\n" ...
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def tkForm(fields): """tkForm(fields: dict)->dict fields: {'label1': 'defVal1', ...} return: modified fields or {} if Esc >_> tkForm( {'Imię':'iii', 'Imię 2':'iii 2', 'Nazwisko':'Nnn'} ) {'Imię': 'iii 1', 'Imię 2': 'iii 2', 'Nazwisko': 'nnn 3'} """ master = tk.Tk() entries = {} for i, (field, defVal) ...
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def concentration_at_M(Mass, k, P, n_s, Omega_b, Omega_m, h, T_CMB=2.7255, delta=200, Mass_type="crit"): """Concentration of the NFW profile at mass M [Msun/h]. Only implemented relation at the moment is Diemer & Kravtsov (2015). Note: only single concentrations at a time are allowed at the moment. Ar...
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def flip_thetas(thetas, theta_pairs): """Flip thetas. Parameters ---------- thetas : numpy.ndarray Joints in shape (num_thetas, 3) theta_pairs : list List of theta pairs. Returns ------- numpy.ndarray Flipped thetas with shape (num_thetas, 3) """ thetas...
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def Client(token=None, endpoint=None, config_path=None, connect_timeout=None): """Return global `RESTClientObject` with optional configuration. Missing configuration will be read from env or config file. Parameters ---------- token : str, optional API token endpoint : str, optional ...
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def numeral_to_int(numeral: str) -> int: """Returns the integer value represented by the given Roman numeral.""" i = 0 numeral_len = len(numeral) total = 0 while i < numeral_len: curr_value = numeral_values[numeral[i]] if i < numeral_len - 1: next_value = numeral_values[n...
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def TopOpeBRepTool_TOOL_tryTg2dApp(*args): """ :param iv: :type iv: int :param E: :type E: TopoDS_Edge & :param C2DF: :type C2DF: TopOpeBRepTool_C2DF & :param factor: :type factor: float :rtype: gp_Vec2d """ return _TopOpeBRepTool.TopOpeBRepTool_TOOL_tryTg2dApp(*args)
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def disable_slot(slot, con=None): """Return True on success, False on failure, if con given does not commit""" if not slot: return False if con is None: try: con = open_database() result = disable_slot(slot, con) if result: con.commit() ...
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def surface_analysis_function_for_tests(surface, a=1, c="bar"): """This function can be registered for tests.""" return {'name': 'Test result for test function called for surface {}.'.format(surface), 'xunit': 'm', 'yunit': 'm', 'xlabel': 'x', 'ylabel': 'y', ...
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def add_or_update(record, key, timetable, name, force_refresh): """ Insert a new user record or update exist one :param name: user name identifier :param timetable: timetable list :param force_refresh: if refresh is required :param key: the key in database :param record: a User record :r...
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def from_time (year=None, month=None, day=None, hours=None, minutes=None, seconds=None, microseconds=None, timezone=None): """ Convenience wrapper to take a series of date/time elements and return a WMI time of the form yyyymmddHHMMSS.mmmmmm+UUU. All elements may be int, string or omitted altogether. If omitted...
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def plural(num, one, many): """Convenience function for displaying a numeric value, where the attached noun may be both in singular and in plural form.""" return "%i %s" % (num, one if num == 1 else many)
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def _handle_login_redirect(request, key): """ This function is used to redirect login request to Microsoft OneDrive login page. :param request: Data given to REST endpoint :param key: Key to search in state file :return: response authorization_url/admin_consent_url """ asset_id = request.GET.g...
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def shape_element(element, node_attr_fields=NODE_FIELDS, way_attr_fields=WAY_FIELDS, problem_chars=PROBLEMCHARS, default_tag_type='regular'): """Clean and shape node or way XML element to Python dict""" node_attribs = {} way_attribs = {} way_nodes = [] tags = [] # Handle secondar...
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import inspect def get_parent_module(): """Get parent filename.""" frame = inspect.currentframe() module = inspect.getmodule(frame) while module.__name__ == __name__: if frame.f_back is None: raise ValueError("Fell off the top of the stack.") frame = frame.f_back mo...
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from typing import Any import logging def log_response(response: str, trim_log_values: bool = False, **kwargs: Any) -> None: """Log a response""" return log_(response, response_logger, logging.INFO, trim=trim_log_values, **kwargs)
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def logged_in(browser: RoboBrowser): """ Returns true if we are still on the login page """ login_div = browser.find('div', content="Login") return True if not login_div else False
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def nan_dot(A, B): """ Returns np.dot(left_matrix, right_matrix) with the convention that nan * 0 = 0 and nan * x = nan if x != 0. Parameters ---------- A, B : np.ndarrays """ # Find out who should be nan due to nan * nonzero should_be_nan_1 = np.dot(np.isnan(A), (B != 0)) shoul...
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def create_sample_lp(): """ Using gurobi create a sample LP. """ # Forest of 100 stands each assumed to be 1 ha in area stands = create_stands(100) # Minimum harvest age is 40 years, 10 year planning horizon schedules = schedule_generator(4, 10) # Track the age of each stand under eac...
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import warnings def train_crabnet(model_name, csv_train, csv_val=None, val_frac=0.25): """ Function to train crabnet. This function allows a user to easily train crabnet by only supplying training data a model name. You can update epoch and batch size if desired. Parameters ---------- mod...
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import math import time def test_query_retry_maxed_out( mini_sentry, relay_with_processing, outcomes_consumer, events_consumer ): """ Assert that a query is not retried an infinite amount of times. This is not specific to processing or store, but here we have the outcomes consumer which we can us...
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def get_buckets(rdd, buckets): """Extracted from pyspark.rdd.RDD.histogram function """ if buckets < 1: raise ValueError("number of buckets must be >= 1") # filter out non-comparable elements def comparable(x): if x is None: return False if type(x) is float and i...
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def dollo_parsimony(phylo_tree, traitLossSpecies): """ simple dollo parsimony implementation Given a set of species that don't have a trait (in our hash), we do a bottom up pass through the tree. If two sister species have lost the trait, then the ancestor of both also lost it. Otherwise, the ancestor has the trait....
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from datetime import datetime def localtime(t=None): """ localtime([seconds]) -> (tm_year,tm_mon,tm_day,tm_hour,tm_min,tm_sec,tm_wday,tm_yday,tm_isdst) Convert seconds since the Epoch to a time tuple expressing local time. When 'seconds' is not passed in, convert the current time instead. Modifi...
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def _to_bytes(str_bytes): """Takes UTF-8 string or bytes and safely spits out bytes""" try: bytes = str_bytes.encode('utf8') except AttributeError: return str_bytes return bytes
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import random def extract_hidden_image(merged_image_path, mesg_image_path, secret_key): """ Unmerge an image. INPUT: The path to the input image. OUTPUT: The extracted hidden image. """ merged_img = Image.open(merged_image_path) message_image = Image.open(mesg_image_path) # Create the...
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from typing import Tuple import pytz def get_earliest_tables_last_updated_date(database_name: str, tables: Tuple[Tuple[str, str]]): """ Return the earliest of the last updated dates for a list of tables in UTC. """ with connections[database_name].cursor() as cursor: cursor.execute( ...
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def check_nested_model(required_attribute_type: str) -> bool: """ Takes the properties of a required attribute on a model and searches as to whether or not this attribute requires a model of its own Parameters ---------- required_attribute_type : str The type of the required attribute ...
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def precision_and_recall(actual, predictions): """ Given predictions (an N-length numpy vector) and actual labels (an N-length numpy vector), compute the precision and recall: https://en.wikipedia.org/wiki/Precision_and_recall Hint: implement and use the confusion_matrix function! Args: ...
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import random from datetime import datetime def _insert_special_message(body): """Troll mode on special day for new pull request.""" tt = datetime.utcnow() # UTC because we're astronomers! dt = timedelta(hours=12) # This roughly covers both hemispheres tt_min = tt - dt tt_max = tt + dt # Se...
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def determine_host(environ): """ Extract the current HTTP host from the environment. Return that plus the server_host from config. This is used to help calculate what space we are in when HTTP requests are made. """ server_host = environ['tiddlyweb.config']['server_host'] port = int(serv...
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def gen_rand_sys(size): """ generate a grid with input size """ # Initialize grid with size grid = np.zeros(shape=(size, size), dtype=int, order='F') # Randomize grid randomize_sys(grid) # return the generated table return grid
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def __get_size__(filename): """ Parses the filename to get the size of a file e.g. 128M+12, 110M-10 """ match = FILE_REGEX.search(filename) if match: size_str = match.group('size') si_unit = match.group('size_si') shift = __get_shift__(match) mul = 1 if si...
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def load_data(filename: str) -> pd.DataFrame: """ Load city daily temperature dataset and preprocess data. Parameters ---------- filename: str Path to house prices dataset Returns ------- Design matrix and response vector (Temp) """ df = pd.read_csv(filename, parse_dates...
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def document_entity_generator(*ehrpreper_files): """Generator of DocumentEntity""" return ( document for ehrpreper_file in ehrpreper_files for model in load(ehrpreper_file) for document in model.documents )
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import csv def readCSV(filepath): """ Method that reads a list of values from a CSV file Parameters: filepath (str): The path of the CSV file Returns: values (list): The list of values """ values = [] with open(IP_LIST, "rt", encoding="ascii") as f: ...
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from typing import Tuple def calc_gamma(data: np.ndarray) -> Tuple[str, int]: """Return a tuple consisting of binary form/string and decimal of gamma value.""" n = np.array([len(data)] * len(data[0]), dtype=int) ones = np.count_nonzero(data, axis=0) zeros = n - ones gamma_bin = ''.join(map(str, (o...
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def read_messages(message_file): """ (file open for reading) -> list of str Read and return the contents of the file as a list of messages, in the order in which they appear in the file. Strip the newline from each line. """ # Store the message_file into the lst as a list of messages...
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def result_message(iden, result=None): """Return a success result message.""" return { 'id': iden, 'type': TYPE_RESULT, 'success': True, 'result': result, }
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import scipy def _smesolve_single_trajectory(data, L, dt, tlist, N_store, N_substeps, rho_t, A_ops, e_ops, m_ops, rhs, d1, d2, d2_len, dW_factors, homogeneous, distribution, args, store_measurement=False, ...
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def reconstruction_error(S1, S2): """Do Procrustes alignment and compute reconstruction error.""" S1_hat = compute_similarity_transform_batch(S1, S2) return S1_hat
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def encode_bboxes(boxes): """[This function processes rectangles from Azure API and converts it to cv2.polylines format] Args: boxes ([list]): [list of x, y coordinates of rectangles] Returns: [list]: [np.array of formatted for use with cv2.polylines function call] """ polygon...
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def createTokenFromCredentials(body): """ Given a request body with a username and a password, generates a JWT access token or returns an error response. """ valid = False try: user: User = User.objects(username=body["username"]).get() valid = user.validatePassword(body["password...
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def upload_forecast_batch(conn, json_io_dict_batch, forecast_filename_batch, project_name, model_abbr, timezero_date_batch, overwrite=False): """ Uploads a batch (list) of JSON dictionaries to the model corresponding to the args. This only iterates through timezeros, not models or ...
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def count_team_forecasts_draw(team_id): """ count the number of draw forecasts for a team """ request = """ SELECT COUNT(*) FROM season_forecast, season_fixture WHERE season_forecast.fixture_id = season_fixture.id AND ( (season_fixture.team_a_id = '%(team_id)s' AND season_forecast.s...
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def get_args(): """Add custom knn arguments.""" parser = extraction_argument_parser() parser.add_argument("-k", "--knearest", type=int, default=5, help="When using a knn classifier, this is the number " "of neighbors to check. " "Defaul...
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from typing import Union def start_xql_query_polling_command(client: Client, args: dict) -> Union[CommandResults, list]: """Execute an XQL query as a scheduled command. Args: client (Client): The XDR Client. args (dict): The arguments to pass to the API call. Returns: CommandResu...
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import logging def change_main_address_column(df: gpd.geodataframe.GeoDataFrame) -> gpd.geodataframe.GeoDataFrame: """ Changing the main address column for building gdf :param df: modified gdf (address column changed) """ # Dropping cadaste address from df df.drop(c.adr_main, inplace=True, axis=1...
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def hello_world1(): """ Flask endpoint :return: TXT """ return "Hello World From App 1!"
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def vpt2(prog, output_str): """ Reads VPT2 information from the output string. :param prog: electronic structure program to use as a backend :type prog: str :param output_str: string of the program's output file :type output_str: str """ return pm.call_module_function( ...
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def learning_rate_schedule(current_epoch, base_learning_rate, lr_boundaries, lr_multiplier): """Handles linear scaling rule, gradual warmup, and LR decay. The learning rate starts at 0, then it increases linearly per epoch. After 5 e...
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def cradmin_titletext_for_role(context, role): """ Template tag implementation of :meth:`django_cradmin.crinstance.BaseCrAdminInstance.get_titletext_for_role`. """ request = context['request'] cradmin_instance = request.cradmin_instance return cradmin_instance.get_titletext_for_role(role)
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def to_unicode_for_identify(hash): """convert hash to unicode for identify method""" if isinstance(hash, unicode): return hash elif isinstance(hash, bytes): # try as utf-8, but if it fails, use foolproof latin-1, # since we don't really care about non-ascii chars # when runni...
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from pathlib import Path def url_to_path(url: URL) -> Path: """Convert a file:// URL into a UNIX path.""" return Path(url.path)
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def ver_notas(request): """Ver notas de investigaciones o documentos""" form_elegir = BuscadorInvestigacionesForm(request.user) form_crear = NotaForm() context = { 'form_elegir':form_elegir, 'form_crear': form_crear, "title":'Notas de investigaciones', ...
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def training_config(estimator, inputs=None, job_name=None, mini_batch_size=None): """Export Airflow training config from an estimator Args: estimator (sagemaker.estimator.EstimatorBase): The estimator to export training config from. Can be a BYO estimator, Framework estimator or...
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def stft(sig, fs=16000, win_type="hann", win_len=0.025, win_hop=0.01): """ Compute the short time Fourrier transform of an audio signal x. Args: x (array) : audio signal in the time domain win (int) : window to be used for the STFT hop (int) : hop-size Returns: X ...
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from bs4 import BeautifulSoup import re def parse_problem_statement(problem_code: str): """ This function takes a Leet Code problem code as input and scrapes the problem statement from the site and returns the parsed problem statement as a text file. PARAMETERS: ----------- problem_co...
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def get_name(): """ should return the name of the tool as listed on http://qcomp.org/competition/2020/""" return "PET"
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def gabby_gums_dark_green() -> Colour: """A convenience function that returns a :class:`Colour` with a value of 0x508787 (R80, G135, B135).""" # discord.Color.from_rgb(80, 135, 135)) return Colour(0x508787)
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def compute_average_oxidation_state(site): """ Calculates the average oxidation state of a site Args: site: Site to compute average oxidation state Returns: Average oxidation state of site. """ try: avg_oxi = sum([sp.oxi_state * occu f...
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def lookup_zones(output_file=None,opts=None): """ This data source provides a list of available zones in the current region. > This content is derived from https://github.com/terraform-providers/terraform-provider-ucloud/blob/master/website/docs/d/zones.html.markdown. """ __args__ = dict() ...
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from pypy.objspace.std.listobject import W_ListObject def PyDict_Next(space, w_dict, ppos, pkey, pvalue): """Iterate over all key-value pairs in the dictionary p. The Py_ssize_t referred to by ppos must be initialized to 0 prior to the first call to this function to start the iteration; the function ...
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import torch def load_point_cloud(filename, min_norm_normal=1e-5, dtype=torch.float64): """ Load a point cloud with normals, filtering out points whose normal has a magnitude below the given threshold. :param filename: Path to a PLY file :param min_norm_normal: The minimum norm of a normal below which...
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import math def cos(x, offset=0, period=1, minn=0, maxx=1): """A cosine curve scaled to fit in a 0-1 range and 0-1 domain by default. offset: how much to slide the curve across the domain (should be 0-1) period: the length of one wave minn, maxx: the output range """ value = math.cos((x/peri...
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def get_terms(num_distinct_documents=500, remove_stopwords=False, stopwords=[',', '.', '-', '\xa0', '“', '”', '"', '\n', '—', ':', '?', 'I', '(', ')']): """ Creates TermGenerator, and parses the documents for a specific set of documents. :param num_distinct_documents: (int) Passe...
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from typing import List from typing import Dict def cli(argv: List[str], renderer: Renderer, commands: Dict[str, Command]): """ Command Line Interface Handles the incoming console input. :param argv: Raw list of arguments. :param renderer: The renderer service to print messages. :param comma...
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def calc_crossproduct_flow(vU,vV,btU_in,btV_in,elev,bt_depth,mtime): """ Calculates the discharge(flow) by finding the cross product of the water and bottom track velocities. **elev and bt_depth are positive** Inputs: vU = U velocity, 2D numpy array, shape [ne,nb] {m/s} vV = V ve...
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def reverse_mutation(perm, *args): """ Performs a reverse mutation on a permutation """ n = len(perm) - 1 i = np.random.choice(n, 1)[0] perm[i:i+2] = perm[i:i+2][::-1] return perm
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def MTL_loss(device, batch_size, ndata=0, contrastive_loss=False): """Returns the learned uncertainty loss function.""" # task_rot = LearnedLoss('CrossEntropy') task_contrastive = LearnedLoss('Contrastive', batch_size=batch_size) task_recons = LearnedLoss('L1') task_NCE = LearnedLoss('NCE', nda...
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def non_commutative_sympify(string: str): """Evaluates sympy string in non-commutative fashion. This function was taken from stack overflow answer by @ely https://stackoverflow.com/a/32169940 """ parsed_expr = parse_expr(string, evaluate=False) new_locals = { sym.name: Symbol(sym.name,...
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def parse_last_name(name_string): """ isolates last name in a name string extracted from a record args: name_string: str, entire name returns: last_name: str, with removed diactritics and in uppper case; may include value of subfield $b """ try: last_na...
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def generate_neighbours(pattern: str, mismatches: int) -> set: """ Generate neighbours for the given pattern (genome string) :param pattern: genome pattern :param mismatches: number of mismatches to generate neighbours :return: a set of patterns in the neighbourhood, including the 'pattern' itself ...
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def head_pose_preprocess(imgs): """ Preprocesses the image(s) and face detections for the head pose estimator. Parameters ---------- imgs: NumPy array The image(s) to format with values in the range [-1, 1]. Returns ------- input_hp: NumPy array Formatted image(s). ...
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def two_sum(nums, target): """ :type nums: List[int] :type target: int :rtype: List[int] """ for i in range(len(nums)): mid = target - nums[i] for j in range(i + 1, len(nums)): if nums[j] == mid: return [i, j]
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import pandas def filter_useful_paths_into_a_dataframe(path_list): """ Classifies the file types of the paths we actually care about then finegles them into a DataFrame. """ print("Gathering metadata.") paths_we_actually_care_about = [path for path in path_list if filetype_of(path) != "unsorted"...
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def pivottab(d, rowkey, columnkey, reducefn, duplicates=False): """ A simple pivot table generator based on 2 key indexes and a reduce function Parameters ---------- d: dict like structure data container (SimpleTable or DictDataFrame) rowkey : str Values to group by in the rows ...
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def paseto_required(): """ """ def wrapper(func): @wraps(func) def decorated_view(*args, **kwargs): if not hasattr(current_app, "paseto_verifier"): raise ConfigError("paseto_verifier is not set in the current_app.") if not current_paseto.is_verified: ...
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def mean_of_list(list_in): """Returns the mean of a list Parameters ---------- list_in : list data for analysis Returns ------- mean : float result of calculation """ mean = sum(list_in) / len(list_in) return(mean)
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def delazi(lat1, lon1, lat2, lon2): """delazi(double lat1, double lon1, double lat2, double lon2)""" return _Math.delazi(lat1, lon1, lat2, lon2)
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def preliminary_register_user(): """Администратор может добавить предопределенного пользователя (студента или преподавателя) """ answer = blank_resp() try: if current_user.status != 'admin': raise Exception('Only admins can do preliminary registration') form = PreliminaryRe...
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from collections import OrderedDict def read_markers_gmt(filepath): """ Read a marker file from a gmt. """ ct_dict = OrderedDict() with open(filepath) as file_gmt: for line in file_gmt: values = line.strip().split('\t') ct_dict[values[0]] = values[2:] return ct_...
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def num_decimal_part(value: float) -> float: """Return the decimal part of a floating point number. Parameters ---------- >>> num_decimal_part(-2.1) -0.1 >>> num_decimal_part(2.1) 0.1 """ return value - num_truncate(value)
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def partition_sort(arr): """ An idyllic variant of quicksort, powered by numpy.partition. """ if arr.shape[0] < 2: return arr mid = arr.shape[0] // 2 partitioned = np.partition(arr, mid) sm = partition_sort(partitioned[:mid]) lg = partition_sort(partitioned[(mid+1):]) ...
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def _phase_from_label(label): """Return the phase from a label""" # Returns None if label is invalid label = label.replace("+", "", 1).replace("1", "", 1).replace("j", "i", 1) phases = {"": 0, "-i": 1, "-": 2, "i": 3} if label not in phases: raise QiskitError("Invalid Pauli phase label '{}'"...
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def inverse_metric_tensor(basis): """ Compute the inverse metric tensor for a basis. :param basis: Basis (square matrix with basis vectors as columns). :return: Inverse metric tensor. """ g = metric_tensor(basis) if not isinstance(g, np.ndarray): # Assume scalar return 1 / g...
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import logging def get_all_annots(annotations): """ All annotations """ all_annots = set() for genome in annotations.keys(): for annot_name in annotations[genome].keys(): all_annots.add(annot_name) logging.info(' No. of annotation columns: {}'.format(len(all_annots))) ...
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def get(guild): """ Gets a single GuildSettings Object representing the settings of that guild :param guild: :return Single GuildSettings Object: :type GuildSettings: """ return GuildSettings(guild)
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from pathlib import Path def process_attachments(path_to_content_file: Path, set_of_links: set[str], note_paths: set[Path], source_absolute_root): """ Generate sets of attachment links from content. The sets of links based on the status of that links. all - all links found...
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