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import json def get_item_details(args, doc=None, for_validate=False, overwrite_warehouse=True): """ args = { "item_code": "", "warehouse": None, "customer": "", "conversion_rate": 1.0, "selling_price_list": None, "price_list_currency": None, "plc_conversion_rate": 1.0, "doctype": "", "na...
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from typing import Type def _get_store(cls: Type[BaseStore]) -> BaseStore: """Get store object from cls :param cls: store class :return: store object """ if jinad_args.no_store: return cls() else: try: return cls.load() except Exception: return...
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async def connections_send_message(request: web.BaseRequest): """ Request handler for sending a basic message to a connection. Args: request: aiohttp request object """ context = request.app["request_context"] connection_id = request.match_info["conn_id"] outbound_handler = request...
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import json def load_json(path: str): """Load json file from given path and return data""" with open(path) as f: data = json.load(f) return data
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def process(): """ The main function which responds to the html form submission. The Flask server has it under the /process address. """ # 1. Obtain inputs from the webpage code = request.form.get('Python_Code', '', type=str) graph = request.form.get('Figure_Parameters', '', type=str) ...
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import functools def check_admin_access(func): """Wrap a handler with admin checking. This decorator must be below post(..) and get(..) when used. """ @functools.wraps(func) def wrapper(self): """Wrapper.""" if not auth.is_current_user_admin(): raise helpers.AccessDeniedException('Admin acce...
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def genericSearch(problem, fringe, heuristic=None): """ A generic search algorithm to solve the Pacman Search :param problem: The problem :param fringe: The fringe, either of type: - Stash, for DFS. A Last-In-First-Out type of stash. - Queue, for BFS. A First-In-First-Out type of stash. ...
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def post_processing( predicted: xr.Dataset, ) -> xr.DataArray: """ filter prediction results with post processing filters. :param predicted: The prediction results """ dc = Datacube(app='whatever') #grab predictions and proba for post process filtering predict=predicted.Predicti...
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def average_filter(values, n=3): """ Calculate the sliding window average for the give time series. Mathematically, res[i] = sum_{j=i-t+1}^{i} values[j] / t, where t = min(n, i+1) :param values: list. a list of float numbers :param n: int, default 3. window size. :return res: lis...
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def _get_int_val(val, parser): """Get a possibly `None` single element list as an `int` by using the given parser on the element of the list. """ if val is None: return 0 return parser.parse(val[0])
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def read_csv_folder_into_tidy_df(csv_glob, drop_columns=[' '], sample_id_categories=None, regex_exp="[a-z]\dg\d\d?"): """ Input ----- Takes glob (str) to csv folder as input. Optional sample_id_categories (e.g. list). Function -------- Combines into tidy dataframe. Returns ------- ...
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def read_gps(gps_filename): """ read gps data and output arrays of coordinates, one with speeds, one with altitudes :param gps_filename: the gps filename :return: 2 lists of points, one containing speed, the other altitude """ speed_data = [] # list for storing gps coordinates with speed ...
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def gram_schmidt(vs, normalised=True): """Gram-Schmidt Orthonormalisation / Orthogonisation. Given a set of vectors, returns an orthogonal set of vectors spanning the same subspace. Set `normalised` to False to return a non-normalised set of vectors.""" us = [] for v in np.array(vs): u =...
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def gcd(a, b): """Compute greatest common divisor of a and b. This function is used in some of the functions in PyComb module. """ r = a % b while r != 0: a = b b = r r = a % b return b
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import math def circle_line_intersect(circle, a, b): """a and b are endpoints""" assert isinstance(a, Point) and isinstance(b, Point) c, r = circle ab = b - a p = a + ab * (c - a).dot(ab) / ab.dist2() s = Point.cross(b-a, c-a) h2 = r*r - s * s / ab.dist2() if h2 < 0: return () ...
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import json def rekognition_json_to_df(path, filter_poseNAs=False): """Convert AWS Rekognition output json into Pandas DataFrame. Works for json responses written by AWS Rekognition GetFaceSearch function (or as run in VidFaceSearch.py) Arguments: path -- (string) path/file filter_pos...
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def horizontal_flip(img, boxes, labels): """ Function to horizontally flip the image The gt boxes will be need to be modified accordingly Args: img: the original PIL Image boxes: gt boxes tensor (num_boxes, 4) labels: gt labels tensor (num_boxes,) Returns: img: the ...
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def is_micropython_usb_device(port): """Checks a USB device to see if it looks like a MicroPython device. """ if type(port).__name__ == 'Device': # Assume its a pyudev.device.Device if ('ID_BUS' not in port or port['ID_BUS'] != 'usb' or 'SUBSYSTEM' not in port or port['SUBSYSTEM'...
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def gauss_paramters(): """ Generate a random set of Gaussian parameters. Parameters ---------- None Returns ------- comps: int Number of components amp: float Amplitude of the core component x: array x positions of components y: array y posit...
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def ignore_previously_commented(reviews, username=None, email=None): """Ignore reviews where I'm the last commenter.""" filtered_reviews = [] for review in reviews: if _name(review['comments'][-1]['reviewer']) not in (username, email): filtered_reviews.append(review) return filtered_...
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def get_n_p(A_A, n_p_in='指定しない'): """付録 C 仮想居住人数 Args: A_A(float): 床面積 n_p_in(str): 居住人数の入力(「1人」「2人」「3人」「4人以上」「指定しない」) Returns: float: 仮想居住人数 """ if n_p_in is not None and n_p_in != '指定しない': return { '1人': 1.0, '2人': 2.0, '3人': 3.0, '4人以上':...
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def parse_ma_file(seq_obj, in_file): """ read seqs.ma file and create dict with sequence object """ name = "" index = 1 total = defaultdict(int) ratio = list() with open(in_file) as handle_in: line = handle_in.readline().strip() cols = line.split("\t") samples...
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def make_mmvt_boundary_definitions(cv, milestone): """ Take a Collective_variable object and a particular milestone and return an OpenMM Force() object that the plugin can use to monitor crossings. Parameters ---------- cv : Collective_variable() A Collective_variable object whi...
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def mask(inputs, queries=None, keys=None, type=None): """Masks paddings on keys or queries to inputs inputs: 3d tensor. (N, T_q, T_k) queries: 3d tensor. (N, T_q, d) keys: 3d tensor. (N, T_k, d) e.g., >> queries = tf.constant([[[1.], [2.], [0.]]],...
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def is_leaf_module(module): """Utility function to determine if the given module is a leaf module - that is, does not have children modules :return: True if the module is a leaf, False otherwise """ module_list = list(module.modules()) return bool(len(module_list) == 1)
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import macfs, MACFS def _gettempdir_inner(): """Function to calculate the directory to use.""" global tempdir if tempdir is not None: return tempdir try: pwd = os.getcwd() except (AttributeError, os.error): pwd = os.curdir attempdirs = ['/tmp', '/var/tmp', '/usr/tmp', p...
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def edit_subgroup_purchases(request, delivery, subgroup): """Allows to change the purchases of user's subgroup. Subgroup staff only.""" delivery = get_delivery(delivery) user = request.user subgroup = get_subgroup(subgroup) if user not in subgroup.staff.all() and user not in delivery.network.staff....
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def get_biggest_pv_to_exchange_ratio(dataset): """Return the largest ration of production volume to exchange amount. Considers only reference product exchanges with the ``allocatable product`` classification. In theory, this ratio should always be the same in a multioutput dataset. However, this is quite ...
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def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): """Sequence Processing Pipeline command Parameters ---------- qclient : tgp.qiita_client.QiitaClient The Qiita server client job_id : str The job id parameters : dict The parameter values for this jo...
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def Reorder(x, params, output=None, **kwargs): """Reorder a tuple into another tuple. For example, we can re-order (x, y) into (y, x) or even (y, (x, y), y). The output argument specifies how to re-order, using integers that refer to indices in the input tuple. For example, if input = (x, y, z) then ...
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def _is_fix_comment(line, isstrict): """ Check if line is a comment line in fixed format Fortran source. References ---------- :f2008:`3.3.3` """ if line: if line[0] in '*cC!': return True if not isstrict: i = line.find('!') if i!=-1: ...
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def parseConfigFile(configFilePath): """ :param configFilePath: :return: a hash map of the parameters defined in the given file. Each entry is organized as <parameter name, parameter value> """ # parse valid lines lines = [] with open(configFilePath) as f: for line in f: ...
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def powerset(iterable): """ powerset([1,2,3]) --> [(), (1,), (2,), (3,), (1,2), (1,3), (2,3), (1,2,3)] Args: iterable : iterable (e.g. list, tuple,...) - set to generate possible subsets of Returns: list - list of possible subsets """ xs = list(iterable) # note we return an...
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def request_artifact_published(etos, artifact_id): """Request an artifact published event from graphql. :param etos: ETOS library instance. :type etos: :obj:`etos_lib.etos.Etos` :param artifact_id: ID of artifact created the artifact published links to. :type artifact_id: str :return: Response ...
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from scipy.signal import find_peaks def count_abs_peak(arr1d, threshold): """ calculates the number of scenes which are underflooded depending on the peak count function which calculates how often the signal drops beneath a certain threshold ---------- arr1d: numpy.array ...
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def planck_taper(tlist, t1, t2): """tlist: array of times t1. for t<=t1 then return 0 t2. for t>=t2 then return 1 else return 1./(np.exp((t2-t1)/(t-t1)+(t2-t1)/(t-t2))+1)""" tout = [] for t in tlist: if t<=t1: tout.append(0.) elif t>=t2: tout.append(1.) ...
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def has_annotations(doc): """ Check if document has any mutation mention saved. """ for part in doc.values(): if len(part['annotations']) > 0: return True return False
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def xmon_to_arc(xmon: XmonDevice) -> Architecture: """Generates a :math:`\\mathrm{t|ket}\\rangle` :py:class:`Architecture` object for a Cirq :py:class:`XmonDevice` . :param xmon: The device to convert :return: The corresponding :math:`\\mathrm{t|ket}\\rangle` :py:class:`Architecture` """ node...
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def LoadAcqSA(): """Acquisition Loading per Sum Assured""" param1 = SpecLookup("LoadAcqSAParam1", Product()) param2 = SpecLookup("LoadAcqSAParam2", Product()) return param1 + param2 * min(PolicyTerm / 10, 1)
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def DEFAULT_APPLICANT_SCRUBBER(raw): """Remove all personal data.""" return {k: v for k, v in raw.items() if k in ("id", "href", "created_at")}
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import io def _has_fileno(f): # type: (Any) -> bool """ test that a file-like object is really a filehandle Only filehandles can be given to apt_pkg.TagFile. """ try: f.fileno() return True except (AttributeError, io.UnsupportedOperation): return False
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import binascii def _sign_rsa(hash_algorithm_name: str, sig_base_str: str, rsa_private_key: str): """ Calculate the signature for an RSA-based signature method. The ``alg`` is used to calculate the digest over the signature base string. For the "RSA_SHA1" signature method,...
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def partition(my_list: list, part: int) -> list: """ Function which performs Partition """ begin = 0 end = len(my_list) - 1 while begin < end: check_lower = my_list[begin] < part check_higher = my_list[end] >= part if not check_lower and not check_higher: # Swap ...
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import numpy import logging import multiprocessing def GenerateHoverDatabase(): """Generates a hover aerodynamics database in the DVL format. A hover aerodynamic database models all the aerodynamic surfaces as independent airfoils and accounts for the effect of the propwash on these surfaces. The database i...
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def silhouette_k(data, n_clusters): """Generates a silhouette plot for n_clusters """ fig, ax1 = plt.subplots(1) ax1.set_xlim([-.1, 1]) ax1.set_ylim([0, data.shape[0] + (n_clusters + 1) * 10]) clusterer = KMeans(n_clusters=n_clusters) cluster_labels = clusterer.fit_predict(data) silhouet...
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from typing import Tuple import torch def _get_value(point: Tuple[int, int, int], volume_data: torch.Tensor) -> float: """ Gets the value at a given coordinate point in the scalar field. Args: point: data of shape (3) corresponding to an xyz coordinate. volume_data: a Tensor of size (D, H...
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import hashlib from io import StringIO from datetime import datetime def generate(request, name): """ Generate initialcons for a given name as a .png. Accepts custom size and font as query parameters. """ if name == '': name = '?' name = name.encode('utf-8').upper() # Custom size ...
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def make_interpolant(a, b, func, order, error, basis="chebyshev", adapt_type="Remez", dtype='64', accurate=True, optimizations=[]): """ Takes an interval from a to b, a function, an interpolant order, and a maximum allowed error and returns an Approximator class representing a mono...
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def handle_UnknownLanguageError(exc, *args): """Handles error raised when an unknown language is requested """ _ = gettext_lang.lang lang = exc.args[0] all_langs = exc.args[1] message = _( " AvantPy exception: UnknownLanguageError\n\n" " The following unknown language was ...
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import requests def get_title(bot, trigger): """ Get the title of the page referred to by a chat message URL """ DOMAIN_REMAPS = [("mobile.twitter.com", "twitter.com")] url = trigger.group(1) for substr, repl in DOMAIN_REMAPS: url = url.replace(substr, repl) host = urlparse(url).hostname ...
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def assumption_html(): """Produces an HTML list of all assumption descriptions.""" # full_descriptions = [a.description.format(a.value) for a in ASSUMPTIONS_TO_DISPLAY] items = _list_items(map(_prettyprint, ASSUMPTIONS_TO_DISPLAY)) return ASSUMPTION_TEXT.format("\n".join(items))
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from typing import OrderedDict def edit_page_element(project, pagenumber, pchange, location, tag_name, brief, hide_if_empty, attribs): """Given an element at project, pagenumber, location sets the element values, returns page change uuid """ proj, page = get_proj_page(project, pagenumber, pchange) ...
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def _sparse_elm_mul(spmat_csr, col): """ spmat (n, m) col (n,) """ for i in range(spmat_csr.shape[0]): i0, i1 = spmat_csr.indptr[i], spmat_csr.indptr[i+1] if i1 == i0: continue spmat_csr.data[i0:i1] *= col[i] return spmat_csr
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def list_ports(): """ Return a list of current port trees managed by poudriere CLI Example: .. code-block:: bash salt '*' poudriere.list_ports """ _check_config_exists() cmd = "poudriere ports -l" res = __salt__["cmd.run"](cmd).splitlines() return res
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def _make_vc_curves(ch_data_cache: analyzer.CalcCache): """ Format the VC curves of the main accelerometer channel into a pandas object. """ df_vc = ch_data_cache._VCCurveData * analyzer.MPS_TO_UMPS # (m/s) -> (μm/s) df_vc["Resultant"] = calc_stats.L2_norm(df_vc.to_numpy(), axis=1) if df_vc.siz...
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from typing import Any from typing import Optional def match_attribute_node(obj: Any, name: Optional[str] = None) -> bool: """ Returns `True` if the first argument is an attribute node matching the name, `False` otherwise. Raises a ValueError if the argument name has to be used, but it's in a wrong format...
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def get_data_accessor_predicate( data_type: DataTypeLike = None, format_id: str = None, storage_id: str = None ) -> ExtensionPredicate: """ Get a predicate that checks if a data accessor extensions's name is compliant with *data_type*, *format_id*, *storage_id*. :param data_type...
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from typing import Any from typing import Type import dataclasses from typing import is_typeddict from typing import get_origin from typing import Literal from typing import Union def check(value: Any, ty: Type[Any]) -> Result: """ # Examples >>> assert is_error(check(1, str)) >>> assert not is_erro...
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def construct_feature_columns(): """Construct the TensorFlow Feature Columns. Returns: A set of feature columns """ # There are 784 pixels in each image. return set([tf.feature_column.numeric_column('pixels', shape=784)])
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def generate_sample_path(n): """ Generates a sample path :param n: path length :returns x, y: state and observations sample path """ x = np.zeros((n + 1, m_W.shape[0])) y = np.zeros((n + 1, m_Nu.shape[0])) # w = np.random.normal(self.m_w, self.std_w, (n + 1, self.m_w.shape[0])) # nu ...
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def get_pod_by_label_selector( kube_client, label_selector, pod_namespace=namespace ) -> str: """Return the name of a pod found by label selector.""" pods = kube_client.list_namespaced_pod( pod_namespace, label_selector=label_selector ).items assert ( len(pods) > 0 ), f"Expected ...
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import builtins def xsh_session(): """return current xonshSession instance.""" return builtins.__xonsh__
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def is_date_valid(keyid, date, lookup_dict=movie_dict): """ Function to see if a date is valid for a given key. :param keyid: key into the dictionary :param date: a date to check for in the list corresponding to 'keyid' :param lookup_dict: lookup dictionary Note, the date is treated as an exact ...
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import string def format_filename(name): """Take a string and return a valid filename constructed from the string. Uses a whitelist approach: any characters not present in valid_chars are removed. Also spaces are replaced with underscores. Note: this method may produce invalid filenames such as ``, `.` or `..` W...
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def bin_plot(frame, x = None, target = 'target', iv = True): """plot for bins """ group = frame.groupby(x) table = group[target].agg(['sum', 'count']).reset_index() table['badrate'] = table['sum'] / table['count'] table['prop'] = table['count'] / table['count'].sum() prop_ax = tadpole.barp...
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import time def Get_ConfusionMatrix(TrueLabels, PredictedLabels, Classes, Normal=False, Title='Confusion matrix', ColorMap='rainbow', FigSize=(30,30), save=False): """ Function designed to plot the confusion matrix of the predicted labels versus the true leabels INPUT: vector containi...
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def _noncentrality_chisquare(chi2_stat, df, alpha=0.05): """noncentrality parameter for chi-square statistic `nc` is zero-truncated umvue Parameters ---------- chi2_stat : float Chisquare-statistic, for example from a hypothesis test df : int or float Degrees of freedom alp...
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from typing import cast import select def get_subjects(): """ Get all subjects from the database """ connection = db_engine.connect() subject = get_table("subject") columns = [ subject.c.id, cast(subject.c.date_created, Text), subject.c.date_created.label('date_created'), cast(...
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def get_rest_api(*, config: Config) -> FastAPI: """Creates a FastAPI app.""" container = setup_container(config=config) container.wire(modules=["ucs.adapters.inbound.fastapi_"]) api = FastAPI() api.include_router(router) configure_app(api, config=config) return api
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def read_expression_profiles(pro_file): """ Return a DataFrame containing data from a FluxSimulator .pro file. Return a DataFrame encapsulating the data from a FluxSimulator transcriptome profile (.pro) file. pro_file: Path to a FluxSimulator transcriptome profile file. """ return pd.read_c...
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def format_list(lst): """ Format a list as a string, ignore if it is string :param lst the list to format :return the formatted string """ if not isinstance(lst, basestring): return " ".join(str(i) for i in lst) return lst
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def sampler_paraphrase(sentence, sampling_temp=1.0): """Paraphrase by sampling a distribution Args: sentence (str): A sentence input that will be paraphrased by sampling from distribution. sampling_temp (int) : A number between 0 an 1 Returns: str: a candidate paraphra...
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def create_graph(tensorboard_scope, mode_scope, input_file, input_len=2, output_len=1, batch_size=1, verbose=True, reuse=None, n_threads=2): """ create or reuse graph :param tensorboard_scope: variable scope name :param mode_scope: 'train', 'valid', 'test' :param input_file: train or valid or test f...
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def update_trip_public(request, trip_id): """ Makes given trip public :param request: :param trip_id: :return: 400 if user not present in the trip :return: 404 if trip or user does not exist :return: 200 successful """ try: trip = Trip.objects.get(pk=trip_id) # if si...
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def get_peer_count(ihash): """Return count of all participating peers we've seen""" return g.redis.scard("%s:peers:N" % ihash)
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import hashlib def calc_checksum(filename): """ Calculates a checksum of the contents of the given file. :param filename: :return: """ try: f = open(filename, "rb") contents = f.read() m = hashlib.md5() m.update(contents) checksum = m.hexdigest() ...
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def alignment_matrix(subject, target, precision=BASE_PREC, verbosity=0, max_steps=BASE_STEPS): """ Numerically find the rotation matrix necessary to rotate the `subject` vector to the `target` direction. Args: subject (np.ndarray): Length-3 vector to rotate. target (np.ndarray): Length-3 ve...
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def make_batch(sentences): """ create batch data from sentences (list) """ input_batch = [] target_batch = [] for sen in sentences: word = sen.split() input = [word_dict[n] for n in word[:-1]] target = word_dict[word[-1]] input_batch.append(np.eye(n_class)[input...
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def query_to_str(statement, bind=None): """ returns a string of a sqlalchemy.orm.Query with parameters bound WARNING: this is dangerous and ONLY for testing, executing the results of this function can result in an SQL Injection attack. """ if isinstance(statement, sqlalchemy.orm.Que...
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def __filter_card_id(cards: list[str]): """Filters an list with card ids to remove repeating ones and non-ids""" ids = list() for c in cards: try: int(c) except ValueError: continue else: if c not in ids: ids.append(c) ret...
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import time def get_elapsed_time(start_time) -> str: """ Gets nicely formatted timespan from start_time to now """ end = time.time() hours, rem = divmod(end-start_time, 3600) minutes, seconds = divmod(rem, 60) return "{:0>2}:{:0>2}:{:05.2f}".format(int(hours), int(minutes), seconds)
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def predict_causalforest(cforest, X, num_workers): """Predicts individual treatment effects for a causal forest. Predicts individual treatment effects for new observed features *X* on a fitted causal forest *cforest*. Predictions are made in parallel with *num_workers* processes. Args: cfo...
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def sectnum(name, arguments, options, content, lineno, content_offset, block_text, state, state_machine): """Automatic section numbering.""" pending = nodes.pending(parts.SectNum) pending.details.update(options) state_machine.document.note_pending(pending) return [pending]
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import logging import re def make_vectorized_optimizer_class(cls): """Constructs a vectorized DP optimizer class from an existing one.""" child_code = cls.compute_gradients.__code__ if child_code is not parent_code: logging.warning( 'WARNING: Calling make_optimizer_class() on class %s that overrides...
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import fnmatch def filename_matches_pattern(filepath, pattern): """ """ if isinstance(pattern, string_types): pattern = (pattern, ) for p in tuple(pattern): if fnmatch(filepath, p): return True return False
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import time def gmt_time(): """ Return the time in the GMT timezone @rtype: string @return: Time in GMT timezone """ return time.strftime('%Y-%m-%d %H:%M:%S GMT', time.gmtime())
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import string def convertbase(num, base=10): """ Convert a number in base 10 to another base :type num: number :param num: The number to convert. :type base: integer :param base: The base to convert to. >>> convertbase(20, 6) '32' """ sign = 1 if num > 0 else -1...
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import inspect def get_riskmodel(taxonomy, oqparam, **extra): """ Return an instance of the correct riskmodel class, depending on the attribute `calculation_mode` of the object `oqparam`. :param taxonomy: a taxonomy string :param oqparam: an object containing the parameters needed...
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def add_str(arg1, arg2): """concatenate arg1 & arg2 Using in template: '{{ arg1|add_str:arg2 }}' """ return str(arg1) + str(arg2)
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def clean_string_columns(df): """Clean string columns in a dataframe.""" try: df.email = df.email.str.lower() df.website = df.website.str.lower() except AttributeError: pass str_columns = ["name", "trade_name", "city", "county"] for column in str_columns: try: ...
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def build_profile(first, last, **user_info): """Build a dictionary containing everything we know about a user.""" profile = {} profile['first_name'] = first profile['last_name'] = last for key, value in user_info.items(): profile[key] = value return profile
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def _QueryForUser(user, role=None, target=None): """Gets all _Permissions for the user's ID and e-mail domain.""" return _Query(user.id, role, target) + _Query(user.email_domain, role, target)
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def decode_transfer2(instruction: TransactionInstruction) -> Transfer2Params: """Decode a transfer2 token transaction and retrieve the instruction params.""" parsed_data = __parse_and_validate_instruction(instruction, 4, InstructionType.TRANSFER2) return Transfer2Params( program_id=instruction.progr...
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def deep_predict(data: pd.DataFrame, model, kernel: str): """ Deepl Predict Method. """ data = feature_time(data) print(data.shape) print(data.tail(5)) # normalization data = data.set_index('time') data_norm = (data - data.mean()) / data.std() print("name: ", model.name) thi...
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def create(user_id): """ Create User Function """ req_data = request.get_json() isuser = UserModel.get_one_user(user_id) #Check if user exist if isuser: return custom_response({'error': 'User already exist'}, 400) req_data["user_guid"] = user_id user = UserModel(req_data) message = user.create...
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def ordinal(n: int) -> str: """ from: https://codegolf.stackexchange.com/questions/4707/outputting-ordinal-numbers-1st-2nd-3rd#answer-4712 """ result = "%d%s" % (n, "tsnrhtdd"[((n / 10 % 10 != 1) * (n % 10 < 4) * n % 10)::4]) return result.replace('11st', '11th').replace('12nd', '12th').replace('13r...
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def part_2(): """Function which calculates the solution to part 2 Arguments --------- Returns ------- """ return None
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import math def calc_dist_enrichment(ref_pos,spots_pos,img_size,delta_dist = 100, img_density=[],flag_plot=False): """ Calculates the expression level as a function of the distance from a reference point. Args: ref_pos (tuple): position of reference point. spots_pos (np array): RNA posit...
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def get_single_two_body_file(molecule_file_name): """ Loads the molecule from a file. :param molecule_file_name: Filename :return: Molecule """ molecule = MolecularData(filename=molecule_file_name) molecule.load() # _molecule = run_pyscf(molecule) return molecule.one_body_integrals...
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def proposition_formatter(propositions): """Returns a list of propositions with selected fields.""" return [ { 'deadline': dateutil_parse(proposition['deadline']).strftime('%Y-%m-%d'), 'status': proposition['status'], 'modified_on': dateutil_parse(prop...
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