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import glob def find_exp_parameters(cfg, logger): """ Extracts experimental parameters. """ hemi, space = cfg['hemi'], cfg['space'] space_idf = f'hemi-{hemi}*.func.gii' if 'fs' in space else 'desc-preproc_bold.nii.gz' # Use all possible participants if not provided if cfg['subject'] is None: ...
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def onroot_vc(t, y, solver): """ onroot function to reset the solver back at the start, but keep the current velocity as long as the time is less than a given amount """ if t > 28: # we have found 4 interruption points, so we stop return 1 solver.reinit_IC(t, [Y0, y[1]]) return 0
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def _only_one_selected(*args): """Test if only one item is True.""" return sum(args) == 1
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import re def get_org_files(rcfile): """Get a list of org files from a 'vimrc' file.""" with open(rcfile, 'r') as vimrc: data = vimrc.read() orgfiles = re.search(r'org_agenda_files\s=.*?\[.*?\]', data, re.DOTALL).group() orgfiles = orgfiles.split('[')[1].split(', ') orgfiles = [slugify(x) ...
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from typing import Iterator from typing import List def build_uncertainty_calibrator( calibration_method: str, uncertainty_method: str, regression_calibrator_metric: str, interval_percentile: int, calibration_data: MoleculeDataset, calibration_data_loader: MoleculeDataLoader, models: Itera...
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def generate_new_diversity_plots(otu_table_fs, gg_f, mapping_f, mapping_category='Sample_Type', min_num_samples=11, category_values_to_exclude=None, verbose=False): """Will exclude 'NA...
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def tile_data3d(data,(lentZ,lentY,lentX)): """ Tile sparky data into 1D numpy array Parameters: * data Three-dimensional data array * lentZ Z (w1) dimention tile size * lentY Y (w2) dimention tile size * lentX X (w3) dimention tile size Returns 1D numpy array of floats ...
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import scipy def sparse_to_vector(vector: scipy.sparse.spmatrix): """ Converts one dimensional sparse matrix to a vector array to allow more features. :param vector: Vector as a sparse matrix (x,1) or (1,x). :return: Vector as an one dimensional array (x,). """ return np.ravel(vector.toarray()...
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def uncentered_operator(X, func, center=None, fill=None, **kwargs): """Only apply the operator on a centered patch In some cases, for example symmetry, an operator might not make sense outside of a centered box. This operator only updates the portion of `X` inside the centered region. Parameters ...
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def _get_range_and_pstring(variable, mean_cube, tropopause=False): """Get range for color bar and print string.""" if variable == "Air Temperature": print_var = "Temperature [K]" set_range = np.linspace(180, 230, 21) elif variable == "Geopotential Height": print_var = "Geopotential H...
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def merge_storage(df, cons, prod, stor): """Merge positve storage in consumption and negative part in the production """ _df = df.copy() assert not _df.isnull().values.any(), 'Include NaN values' _df[prod] = _df[prod] - _df[stor].clip(upper=0) _df[cons] = _df[cons] + _df[stor].clip(lower=0) ...
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from calendar import isleap from datetime import datetime def numeric_date(dt=None): """ Convert datetime object to the numeric date. The numeric date format is YYYY.F, where F is the fraction of the year passed Parameters ---------- dt: datetime.datetime, None date of to be convert...
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def specific_clean_cell_lst(): """Clean a list of cells - column cells""" # List of strings col_cells = request.json["cells"] col_type = request.json["coltype"] clean_cells = fix_specific(col_cells, col_type) return clean_cells
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def compress_sym(sym_expanded, make_symmetric=True): """Compress symmetric matrix to a vector. Similar to scipy.spatial.squareform, but also contains the diagonal. Parameters ---------- sym_expanded : nd-array, shape (size, size) Input matrix to compress. make_symmetric : bool (de...
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def get_cc_biz_id_by_app(fta_application_id): """ 通过fta_application_id获取cc_id """ app = session.query(AlarmApplication).filter_by( app_id=fta_application_id, is_deleted=False, is_enabled=True).first() if app: return app.cc_biz_id else: return None
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from pathlib import Path def get_csv_filename(folder="zips"): """ Returns the Path of the csv-file stored in zips-folder """ csvs = [f for f in Path(folder).iterdir() if f.suffix == ".csv"] if len(csvs) >= 1: return csvs[0] else: logger.error(f"CSV-file missing") raise ...
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import random import string def generate_random_id(start: str = ""): """ Generates a random alphabetic id. """ result = "".join(random.SystemRandom().choices(string.ascii_lowercase, k=16)) if start: result = "-".join([start, result]) return result
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def add_supplementary_xml(element: etree, config: dict) -> etree: """Add arbitrary xml from configuration object to xml Args: element (etree): original xml document config (dict): standard ReadAlong-Studio configuration Returns: etree: xml with supplemental markup """ if "x...
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def get_client_names(worksheet) -> list: """Get list of client names from Excel worksheet.""" num_rows = worksheet.max_row names = [] for i in range(2, num_rows+1): cell_obj = worksheet.cell(row=i, column=1) if cell_obj.value not in names: names.append(cell_obj.value) r...
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def as_json(dictionary): """ Object hook used in order to create the right object reading a JSON. :param dictionary: Dict, Dictionary to analyze. :return: The right object represented in the JSON. """ if "first_name" in dictionary: return User(**dictionary) elif "update_id" in dictio...
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def coefficient_map(cv: xr.DataArray) -> xr.DataArray: """ Return the coefficient map :param cv: cost volume :type cv: xarray.Dataset, with the data variables cost_volume 3D xarray.DataArray (row, col, disp) :return: the coefficient map :rtype : 2D DataArray (row, col) """ row = cv.coor...
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def transpose(a, axes=None): """ Reverse or permute the axes of an array; returns the modified array. For an array a with two axes, transpose(a) gives the matrix transpose. Parameters ---------- a : array_like Input array. axes : tuple or list of ints, optional If specified...
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def post_token(): """ <url>/notifications/api/PushToken Get Device Tokens for notifications """ token = request.json.get('token') deviceId = request.json.get('deviceId') user = User.query.filter_by(token=token).first() device = DevicesNotificationHandlers.query.filter_by(user_id=user.i...
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from datetime import datetime import pytz def get_timestamp() -> str: """ Получение текущей временной метки """ return datetime.datetime.now(pytz.utc).strftime('%Y.%m.%d %H:%M:%S %z').strip()
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from brambox.boxes.annotations import Annotation def as_anno(class_id, x_center, y_center, w, h, Win, Hin): """ Construct an BramBox annotation using the basic YOLO box format """ anno = Annotation() anno.class_id = class_id anno.x_top_left = (x_center - w / 2) * Win anno.y_top_left = (y_c...
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def parse_testcase_xml(testcase): """ Flatten fields of interest from a TestCase XML element into a dict, where anything not found is None """ # We need to emit only Unicode things, but we may get str or Unicode # depending on if the parser thinks we have UTF-8 or ASCII data in a field. ...
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def build_coco_results(dataset, image_ids, rois, class_ids, scores): """Arrange results to match COCO specs in http://cocodataset.org/#format rois: [num_instance, (y1, x1, y2, x2, class_id)] in image coordinates. image_ids: [num_instances] class_ids: [num_instances] scores: (optional) confidence sc...
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import requests def get_instance_ip(compute_url, instance_id, token): """ Retrieve the IPs of the running instance """ url = "%s/servers/%s/ips" % (compute_url, instance_id) headers = {"X-Auth-Token": "%s" % token, "Content-type": "application/json"} curl = requests.get(url=url, headers=headers) ...
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def _domain_map(z, satu, mapType=0): """domain color the array `z`, with the mapping type `mapType`, using saturation `s`. Currently there is only one domain coloring type """ h = _hue(z) s = satu*_np.ones_like(h, _np.float) v = _absolute_map(_np.absolute(z)) hsv_map = _np.dstack((h, s, ...
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from typing import Callable def provider(provided_dependency_name: _Name = None, **named_dependencies: _Name) -> Callable[[_ProviderMethod], _ProviderMethod]: """ Method decorator for instance provider methods in a module class. The provider method can take parameters representing dependencie...
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def _num_to_words(num): """ Turkish converter Params: num(int/long): number to be converted Returns: wordString """ units = ['', u'bir', u'iki', u'üç', u'dört', u'beş', u'altı', u'yedi', u'sekiz', u'dokuz'] teens = ['', u'onbir', u'oniki', u'onüç', u'ondört', u'onbeş', u'on...
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def get_vehicle_txn(session, vehicle_id): """ For when you just want a single vehicle. Arguments: session {.Session} -- The active session for the database connection. vehicle_id {String} -- The vehicle's `id` column. Returns: {dict} or {None} -- Contains vehicle information fo...
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import six def slugify(value): """ Slugify a string (even if it contains non-ASCII chars) """ # Re-map some strings to avoid important characters being stripped. Eg # remap 'c++' to 'cpp' otherwise it will become 'c'. for k, v in settings.OSCAR_SLUG_MAP.items(): value = value.replace(...
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def upper(value: str): # Only one argument. """Converts a string into all uppercase""" return value.upper()
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from typing import Dict from typing import List def _create_sorted_hash_list(data: Dict, hash_function: str) -> List[Dict]: """Create a sorted sha256 hash list.""" out = [] for obj in data: hash = _create_json_hash(obj, hash_function=hash_function) out.append(hash) out.sort() retur...
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def disease_function_subset(ipa, network_dir, printing=False): """ Returns a disease subset of functions. A function is considered a disease if its lowercase name is the same as its class and its name is not a function category. Build must be run first """ disease_names = set() for function ...
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import torch def map_tensor(x, func): """ Apply function @func to torch.Tensor objects in a nested dictionary or list or tuple. Args: x (dict or list or tuple): a possibly nested dictionary or list or tuple func (function): function to apply to each tensor Returns: y (dic...
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def xor(a,b): """ XOR two strings of same length""" assert len(a) == len(b) x = [] for i in range(len(a)): x.append( chr(ord(a[i])^ord(b[i]))) return ''.join(x)
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def wmts2twmsbox_scale(scale_denominator, col, row): """ Returns TWMS equivalent bounding box based on TILECOL and TILEROW. Arguments: scale_denominator -- WMTS scale denominator value from getCapabilities. col -- WMTS TILECOL value. row -- WMTS TILEROW value. """ print ...
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import hashlib import yaml def get_hash(x, length=16): """Return hash of x.""" return hashlib.sha224(yaml.dump(dict(key=x)).encode()).hexdigest()[:length]
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def make_unhealthy(): """Sets the server to simulate an 'unhealthy' status.""" global _is_healthy _is_healthy = False template = render_template('index.html', hostname=gethostname(), zone=_get_zone(), template=...
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def filtreDonner(liste) : """ Fonction qui va filtrer les donner. Cette fonction va filtrer les donners inutiles mot trop frequent ... param : liste[string] -> liste chaine de caractere a filtrer return : liste[string] -> liste chaine de caractere filtrer. """ return liste
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def get_problem_set(dataset,LABELNAME,labels,i2s): """Aggregate labels and associated article/domain information by chosen classification task Arguments - dataset: a list of article text (the corpus) - LABELNAME: a string given by user input identifying the classification task - labels: a dict ...
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def hello_world(text: str) -> str: """Print and return input.""" print(text) return text
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def NestedGroupKFold(model, X, y, parameter_grid, groups, class_weights, scorer=make_scorer(accuracy_score), inner_cv=GroupKFold(n_splits=4), outer_cv=GroupKFold(n_splits=4)): """ Implements a nested version of GroupKFold cross-validation using GridSearchCV to evaluate models that nee...
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def create_vespa_query(query, text_processor, number_videos): """ Create the body of a Vespa query. :param query: a string representing the query. :param text_processor: an instance of `TextProcessor` to convert string to embedding. :param number_videos: Number of videos to return. :return: bod...
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def _thumb_from_pixel_clusters(images, mask, h, w, use_distance_from_centroid=False): """ Alternate implementation. Results are sharper, but noisier """ # 6-color # colors = np.array([[1, 0, 1, 0], [1, 0, 0, 0], [1, 1, 0, 0], # [0, 1, 0, 0], [0, 1, 1, 0], [0, 0, 1, 0]], # ...
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def get_rtClock(): """ Instanziiert ein Real Time Clock Objekt """ return rtc.SDL_DS3231()
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def create_draft(service, user_id, message_body): """Create and insert a draft email. Print the returned draft's message and id. Args: service: Authorized Gmail API service instance. user_id: User's email address. The special value "me" can be used to indicate the authenticated user. message_bo...
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def analyze_files(file_list): """return info for each file in a list that if it passed in analyzedir? passed in basedir? the results are the same?""" result = map(lambda f: (f,)+analyze(f, analyzedir, basedir), file_list) return result
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from . import default_logger import time def profiling(func): """Decorator to mark a function for profiling. The time and memory usage will be recorded and printed. Example: .. highlight:: python .. code-block:: python @profiling def foo(): print(1) """ @wraps(...
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import psutil import math def find_no_of_workers(maxworkers, sys_share=0): """ Find the optimal number of workers for MP such that system does not crash. Parameters ---------- maxworkers : Int. Maximum number of workers allowed. Returns ------- workers : Int. Workers used. sys_sh...
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from typing import Callable from typing import Dict from typing import Any import tqdm from typing import Literal def from_rdflib( graph: Graph, literal_cleaning_func: Callable = None, kg_name: str = None, multi_value: Callable = None, ) -> KG: """Create forayer knowledge graph object from rdflib ...
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def video_player(obj): """ Receives object with 'video' FileField and returns HTML5 player. """ return {'object': obj}
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def wait_for(scope, prompt): """ Waits until the response of the remote host contains the given pattern. :type prompt: regex :param prompt: The prompt pattern. """ conn = scope.get('__connection__') conn.expect(prompt) scope.define(__response__=conn.response) return True
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def render_list_categories(): """ METHOD=GET. Renders Category Page. """ categories = session.query(Category).order_by(asc(Category.name)).all() return render_template('categories/list.html', categories=categories)
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import time def perform_install(pspec, is_upgrade=False, force=False, quiet=False): """ Args: pspec (PackageSpec): Package spec to install is_upgrade (bool): If True, intent is an upgrade (not a new install) force (bool): If True, check latest version even if recently checked q...
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import re def tokens_to_str(message, section='body'): """ Takes one section of a message as specified by key param and returns it in string format to be joined with other messages for summarization, printing, id creation (future). """ body = message[section] new_mess = '' if isins...
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def azip(*aiterables): """async version of izip with parallel iteration""" return _azip(*aiterables, fillvalue=None, stop_any=True)
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def collect_data( bids_dir, participant_label, bids_validate=True, bids_filters=None, ): """ Uses pybids to retrieve the input data for a given participant Examples -------- >>> bids_root, _ = collect_data(str(datadir / 'ds054'), '100185', ... bids_va...
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def filter_features(input_features, **kwargs): """ Args: input_features: A Geojson feature collection Returns: A json of two geojson feature collections: passed and failed """ if type(input_features) is DictType: if input_features.get("features"): return iterate...
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import functools def polygon_wrapper(func): """ Wrapper function to perform the setup and teardown of polygon attributes before and after creating the polygon. Keyword arguments: func (function) -- the function to draw the polygon. """ @functools.wraps(func) def draw_polygon(self...
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def compose_base_find_query(user_id: str, administrator: bool, groups: list): """ Compose a query for filtering reference search results based on user read rights. :param user_id: the id of the user requesting the search :param administrator: the administrator flag of the user requesting the search ...
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def test_prevent_links(): """Returning None from any callback should remove links or prevent them from being created.""" def no_new_links(attrs, new=False): if new: return None return attrs def no_old_links(attrs, new=False): if not new: return None ...
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def intersection (l, r) : """Compute intersection of lists `l` and `r`. >>> intersection (range (4), range (2,5)) [2, 3] """ r_set = set (r) return [x for x in l if x in r_set]
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def filter_df_on_ncases(df, case_id_glue="case:concept:name", max_no_cases=1000): """ Filter a dataframe keeping only the specified maximum number of cases Parameters ----------- df Dataframe case_id_glue Case ID column in the CSV max_no_cases Maximum number of cases...
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def welcome(): """List all available api routes.""" return ( f"/api/v1.0/precipitation<br/>" f"/api/v1.0/stations<br/>" f"/api/v1.0/tobs<br/>" f"/api/v1.0/start<br/>" f"/api/v1.0/start/end" )
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def decode(s): """doc me""" for encoding in "utf-8-sig", "utf-16": try: return s.decode(encoding) except UnicodeDecodeError: continue return s.decode("latin-1")
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def Quantum_Vibrational_S(Temperature, wavenumbers): """ Funciton to calculate the quantum vibrational entropy at a given temperature **Required Inputs Temperature = single temperature in Kelvin to determine the vibrational entropy (does not work at 0 K) wavenumbers = array of wavenumber (in order w...
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def _open(full_path, state, year, variety, database='SID'): """Returns a handle using python's builtin open() function; however, it will skip past any non-content rows as specified within. This is necessary because HCUP files very occasionally have bonus content, typically a data use notice, and it...
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def summon(self: Client, entity: str, pos: Vec3 = None, nbt: dict = None) -> str: """Summons an entity.""" return self.run('summon', entity, pos, nbt)
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def get_inner_html(node): """Gets the inner HTML of a node, including tags.""" children = ''.join(etree.tostring(e).decode('utf-8') for e in node) if node.text is None: return children return node.text + children
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def remove_whitespace(s): """Remove excess whitespace including newlines from string """ words = s.split() # Split on whitespace return ' '.join(words)
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def get_first_group (match): """ Retrieves the first group from the match object. """ return match.group(1)
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from typing import Dict from typing import Tuple from typing import Any def plot_from_region_frames( frames: Dict[str, pd.DataFrame], variable: str, binning: Tuple[int, float, float], region_label: str, logy: bool = False, legend_kw : Dict[str, Any] = None, ) -> Tuple[plt.Figure, plt.Axes, plt...
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from unittest.mock import patch async def init_integration(hass, co2_sensor=True) -> MockConfigEntry: """Set up the Nettigo Air Monitor integration in Home Assistant.""" entry = MockConfigEntry( domain=DOMAIN, title="10.10.2.3", unique_id="aa:bb:cc:dd:ee:ff", data={"host": "10....
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def decode(ciphered_text: str) -> str: """ Decode Atbash cipher :param ciphered_text: Atbash cipher :return: decoded text """ return ''.join(replace_char(char) for char in ciphered_text if char in LOWERCASE or char in DIGITS)
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def text(label, default=None): """ @brief prompt and read a single line of input from a user @retval string input from user """ display = label if( default ): display += " (default: " + str(default) + ")" input = raw_input( display + ": " ) if input == '' and default: i...
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def update_reservation(reservation, updatedSpots, comments): """ Update the reservation with the new spots needed """ newSpots = updatedSpots - reservation.seats_needed reservation.seats_needed = updatedSpots reservation.note=comments db.session.commit() flash("Reservation updated.") ...
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def qc_freq(species, geom, natom, atom, mult, charge, index=-1, high_level = 0): """ Creates a frequency input and runs it. index: >=0 for sampling, each job will get numbered with index """ if index == -1: job = str(species.chemid) + '_fr' else: job = str(species.c...
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from datetime import datetime def sample_to_timed_points(model, size): """As :func:`sample` but return in :class:`open_cp.data.TimedPoints`. """ t = [datetime.datetime(2017,1,1)] * size pts = sample(model, size) assert pts.shape == (size, 2) return open_cp.data.TimedPoints.from_coords(t, *pts....
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def _per_image_standardization(image): """ :param image: image numpy array :return: """ num_compare = 1 for dim in image.shape: num_compare = np.multiply(num_compare, dim) _standardization = (image - np.mean(image)) / max(np.std(image), 1 / num_compare) return _standardization
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import torch def unflatten_parameters(params, example, device): """Unflatten parameters. :args params: parameters as a single 1D np array :args example: generator of parameters (as returned by module.parameters()), used to reshape params :args device: where to store unflattened parameters ...
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def pattern_to_regex(pattern): """ Convert the CODEOWNERS path pattern into a regular expression string. """ orig_pattern = pattern # for printing errors later # Replicates the logic from normalize_pattern function in Gitlab ee/lib/gitlab/code_owners/file.rb: if not pattern.startswith('/'): ...
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def unit2uniform(x, vmin, vmax): """ mapping from uniform distribution on parameter space to uniform distribution on unit hypercube """ return vmin + (vmax - vmin) * x
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def extractHachidoriTranslations(item): """ Parser for 'Hachidori Translations' """ vol, chp, frag, postfix = extractVolChapterFragmentPostfix(item['title']) if not (chp or vol) or 'preview' in item['title'].lower(): return None if 'Charging Magic with a Smile' in item['tags']: return buildReleaseMessageWithT...
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def _tvgp_qvgp_optim_setup(): """Creates a VGP model and a matched tVGP model""" time_points, observations, kernel, noise_variance = _setup() input_data = ( tf.constant(time_points), tf.constant((observations > 0.5).astype(float)), ) likelihood = Bernoulli() tvgp = t_VGP( ...
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def get_average_rate(**options): """ gets average imdb rate of all movies. :rtype: float """ return movies_stat_services.get_average_rate()
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def _uint_to_le(val, length): """Returns a byte array that represents an unsigned integer in little-endian format. Args: val: Unsigned integer to convert. length: Number of bytes. Returns: A byte array of ``length`` bytes that represents ``val`` in little-endian format. """ retur...
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import torch def batch_to_patches(x, patch_size, patches_per_image): """ :param x: torch tensor with images in batch (batsize, numchannels, height, width) :param patch_size: size of patch :param patches_per_image: :return: """ device = x.device assert(x.dim()...
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import json def parse_json(json_data, category): """ Parses the <json_data> from intermediate value. Args: json_data (str): A string of data to process in JSON format. category (str): The category ('all' / 'spam' / 'ham') to extract data from. Returns: (status_code, data), wh...
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def get_dset_size(shape_json, typesize): """ Return the size of the dataspace. For any unlimited dimensions, assume a value of 1. (so the return size will be the absolute minimum) """ if shape_json is None or shape_json["class"] == 'H5S_NULL': return None if shape_json["class"] ...
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from typing import List def check_shapes( feed: "Feed", *, as_df: bool = False, include_warnings: bool = False ) -> List: """ Analog of :func:`check_agency` for ``feed.shapes``. """ table = "shapes" problems = [] # Preliminary checks if feed.shapes is None: return problems ...
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def get_help_response(): """ If we wanted to initialize the session to have some attributes we could add those here """ session_attributes = {} card_title = "OPM Status Help" speech_output = "To begin, ask o. p. m. status an acceptable question. For example, " \ "Is the gov...
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import random def mm_clustering(sampler, state, float_names, fixed_df, total_df_names, fit_scale, runprops, obsdf,geo_obj_pos, best_llhoods, backend, pool, mm_likelihood, ndim, moveset, const = 50, lag = 10, max_prune_frac = 0.9): """ Determines if walkers in the ensemble are lost and removes them. Replacing them ...
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def off_diagonal_min(A): """Returns the minimum of the off diagonal elements Args: A (jax.numpy.ndarray): A real 2D matrix Returns: (float): The smallest off-diagonal element in A """ off_diagonal_entries = off_diagonal_elements(A) return jnp.min(off_diagonal_entries)
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def cli_cosmosdb_sql_stored_procedure_create_update(client, resource_group_name, account_name, database_name, co...
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def create(box=None,n=None,nr=None,nc=None,sr=1,sc=1,cr=None,cc=None,const=None) : """ Creates a new HDU """ if box is not None: nr=box.nrow() nc=box.ncol() sc=box.xmin sr=box.ymin else : if nr is None and nc is None : try : nr=n ...
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def gcd(num1, num2): """Return Greatest Common Divisor""" # Euclidean Algorithm for GCD a = max([num1, num2]) b = min([num1, num2]) while b != 0: mod = a % b a = b b = mod return a
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from typing import List from typing import Dict from typing import Any def read_params_from_config(config: dict, _root_name: str = "") -> List[NamedPyParam]: """Reads params from the nested python dictionary. Args: config: a python dictionary with params definitions _root_name: used internall...
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