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def transformation_task(df): """Tranform original dataset. :param_df: Input Dataframe. :return: Transformed DataFrame. """ ##Prepare dataframes spark.sql('use xxx_usercrypto_db') ##create staging table # spark.sql('drop table if exists stg_users') # df.write.saveAsTable('stg_users')...
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def is_weight_node(node): """ Check if the node is weight type. Args: node (Node): The node object. Returns: bool, if the node is weight type. """ if node.type == NodeTypeEnum.PARAMETER.value: full_name = node.full_name.lower() weight_flag = False if ful...
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def dict_to_qbody(d, prefix=''): """ Generates a string representing a query body from an AST dict. :param d: AST dict :param prefix: needed in case it will recurse """ if type(d) is not dict: return '' s = '' iprefix = prefix + '\t' args = '' for k, v in d.items(): ...
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def has_setter(obj, attr): """True if an attribute has an associated setter. Parameters ---------- obj : object Any class instance. attr : str Name of the attribute to check. """ _check_is_attr_name(attr) return True if has_property(obj, attr) and \ g...
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import pydensecrf.densecrf as dcrf from pydensecrf.utils import ( unary_from_labels, unary_from_softmax, create_pairwise_bilateral, create_pairwise_gaussian) def FC_CRF(pred, im, NLABELS, RESIZE_FACTOR= 5, DELTA_COL= 5, DELTA_SIZE= 5, n_steps=10, CERTAINTY= 0.7, mode= "multilabel"): ...
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import math def convert_to_samples(c, deg, boundary_condition='Mirror', in_place=False): """ Convert interpolation coefficients into samples In the input array, the signals are considered along the first dimension (1D computations). """ n = c.shape[0] if n == 1: return c kerl...
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from .signaltools import get_window def firwin2(numtaps, freq, gain, nfreqs=None, window='hamming', nyq=1.0, antisymmetric=False): """ FIR filter design using the window method. From the given frequencies `freq` and corresponding gains `gain`, this function constructs an FIR filter with l...
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def run_notebook_or_python(clname, path, params): """원격 노트북 인스턴스에서 노트북 또는 파이썬 파일 실행. Returns: tuple: (stdout, exit_code) """ info("run_notebook_or_python: {} - {}".format(clname, path)) check_cluster(clname) clinfo = load_cluster_info(clname) dask = 'type' in clinfo and clinfo['ty...
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def remove_raw_object(cls): """ Decorator. If a Record class is decorated, raw_object will be removed once all mark properties are cached. """ cls.remove_raw_object = True return cls
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import os def validate_experiment_file_existance(args): """Warn if experiment metadata files are missing Parameters ---------- args : argparse.Namespace parsed arguments as generated by argparse.parse_args Returns ------- bool True if we have required arguments """ ...
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def change_user_password(): """ User-friendly function to be used on first boot for changing user passwords """ usernames = get_nonroot_nonsystem_users() if len(usernames) == 0: logger.warning("Can't detect any users! Changing root password instead") usernames = ["root"] for name...
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def columnOfMatrix(matrix, i): """ Метод для получения i-го столбца матрицы """ return [row[i] for row in matrix]
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import datasets import time def run_wall_clock_test(optimizer, problem, num_steps, dataset=datasets.EMPTY_DATASET, seed=None, logdir=None, batch_size=None): """Runs optim...
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def p_list_formatter(primer_list): """ Reformat the primer list (remove unnecessary characters from biopython2 output). Args: primer_list (list): list from list_from_gen output Returns: primer_dimers (list): list with unnecessary chars removed. """ reformat_p_list = [] primer...
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def fullpath(dataset): """ return absolute path to dataset dataset is an array as returned by CURDATA() """ dat = dataset[:] # make a copy because I don't want to modify the original array if len(dat) == 5: # for topspin 2- dat[3] = join(normpath(dat[3]), 'data', dat[4], 'nmr') f...
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def edit_meeting(request, club_name, meeting_id): """Edit details of meeting""" current_club = Club.objects.get(club_name=club_name) meeting = Meeting.objects.get(id=meeting_id) form = MeetingForm(instance=meeting) if request.method == 'POST': form = MeetingForm(request.POST, instance=meetin...
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def parse_mulplt(path): """ Parses MULPLT.DEF file and returns list of lists like: [station, channel type (e.g. SH), channel (E, N or Z)]. """ data = [] with open(path, "r") as f: lines = f.readlines() tag = "#DEFAULT CHANNEL" for line in lines: if line[:len(tag)...
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def status(): """Status check for server""" return "Running...\n"
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def parse(report_file: str, summary_file: str) -> dict: """ Check input file is an accepted file, then select the appropriate parsing method. Args: report_file (str): An Ariba report file of clusters which passed filtering. summary_file (str): A summary file of the report Returns: ...
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import pickle def load_sim(filename): """Load a saved simulation""" with open(filename, "rb") as f: sim = pickle.load(f) return sim
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def _repr_rule(iptc_rule, ipv6=False): """ Return a string representation of an iptc_rule """ s = '' if ipv6==False and iptc_rule.src != '0.0.0.0/0.0.0.0': s += 'src {} '.format(iptc_rule.src) elif ipv6==True and iptc_rule.src != '::/0': s += 'src {} '.format(iptc_rule.src) if ipv6==...
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def CV_IS_SEQ_CLOSED(*args): """CV_IS_SEQ_CLOSED(CvSeq seq) -> int""" return _cv.CV_IS_SEQ_CLOSED(*args)
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import os def default_file(filename=''): """Discard any path components then search for file in system paths.""" filename = os.path.basename(filename) if filename in ['..','.','',None]: # special cases return None # check return value ret = filename # first try filename as provided in cwd...
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def add_padding_0_bits(bits_string: str, required_length: int) -> tuple: """ Adds 0 to bits string. Returns tuple - (bits string with padding, number of added 0s) """ extra_0_bits_count = 0 while len(bits_string) < required_length: bits_string += '0' extra_0_bits_count += 1 r...
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def get_sheet(filename): """ Open workbook and return first worksheet as object Args: filename: local file name Returns: Worksheet object """ wb = load_workbook(filename) return wb.worksheets[0]
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def object_clearance(): """ Check for two Objects Clearance distance: Quick measurements between parallel faces and similarly placed objects Original code from: Bill 03/2015 Adapted to WF by : Rentlau_64 03/2015 """ global verbose msg = verbose m_actDoc = get_ActiveDocument(info=m...
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import json def readlasfile(lasfile): """ Run a PDAL pipeline. Input is a JSON declaration to deliver to PDAL. Output is a labelled numpy array. Data are filtered to compute height above ground using nearest ground point neighbours (TIN method arriving soon) and sort by morton order. Any unused dimen...
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from ansible.inventory.manager import InventoryManager from ansible.parsing.dataloader import DataLoader import os def ssh_to_host(hostname, remote_command=None): """Compose cmd string of ssh and execute Uses Ansible to parse inventory file, gets ssh connection options :param hostname: str. Hostname from...
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def avgpool_4x4(inputs, downsample=False): """ avgpool_4x4 """ return avgpool_base(inputs, (4, 4), downsample)
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def str_data(group, field, default=''): """ Retrieve value of field as a string, with default if field is missing. """ if field in group: data = group[field][0] if data.ndim > 0: value = [_s(v) for v in data] else: value = _s(data) return value ...
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def filter_attributes(func): """Filters and removes attributes from User Dictionary objects depending on test requirements.""" @wraps(func) def filter_attributes_wrapper(*args, **kwargs): # Get generated users. users = func(*args, **kwargs) # If only single user (dict), treat as a ...
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def mask_source_centers(array, fwhm, y, x): """ Creates a mask of ones with the size of the input frame and zeros at the center of the sources (planets) with coordinates x, y. Parameters ---------- array : array_like Input frame. fwhm : float Size in pixels of the FWHM. y, x...
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def IsInstance(type_): """Returns a function which can be used to check whether or not a value is of the given type.""" def Do(item): return isinstance(item, type_) return Do
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from typing import Set def random_proof_tree(rules_dict: RulesDict, root: int) -> Node: """Return random tree found by breadth first search.""" seen: Set[int] = set() root_node = Node(root) queue = deque([root_node]) while queue: v = queue.popleft() rule = choice(list(rules_dict[v....
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def PCreate (name, uvData, err): """ Create the parameters and underlying structures of a set of images. * name = Name to be given to object * uvData = Python uv data from which the image mosaic will be derived Most control parameters are in InfoList member * err = Pyt...
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import sys def curret_platform() -> str: """Get current platform name by short string.""" if sys.platform.startswith('linux'): return 'linux' elif sys.platform.startswith('darwin'): return 'mac' elif sys.platform.startswith('win'): if sys.maxsize > 2 ** 31 - 1: retu...
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def active_subspace(df, weights): """ TODO: docs """ df, M, m = process_inputs(df) # compute the matrix C = np.dot(df.transpose(), df * weights) return sorted_eigh(C)
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def get_nq_report(complete_text): """ Given the complete submission text for an N-Q filing, parse the document and return its respective ReportNQ DTO object. """ lines = complete_text.split('\n') series_list = get_series_list(lines) accepted_date = get_accepted_date(lines) ...
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def split_addresslines( lines ): """ Split up to 4 lines into appropiate fields (org, dept, street 1/2) """ data = { 'organisation': '', 'department': '', 'street_1': '', 'street_2': '', } if len(lines) == 0: pass elif len(lines) == 1: data['s...
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import glob from pathlib import Path import importlib def supported_format(): """ give supported formats """ if not bool(__supported_format__): modules = glob.glob(join(dirname(__file__), "*.py")) module_name = [Path(local_file) for local_file \ in modules if not '__init__...
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def _make_edge_trace(graph_nx: nx.Graph, pos: dict) -> Scatter: """(HELPER) This function is a helper function to visualize_graph_with_attributes. Return a trace containing lines which represent edges between nodes given the position of nodes in pos. """ x_edges = [] y_edges = [] for edge...
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def import_tnmr(path): """ Import tnmr data and return dnpdata object Args: path (str) : Path to .jdf file Returns: tnmr_data (object) : dnpdata object containing tnmr data """ attrs = import_tnmr_pars(path) values, coords, dims = import_tnmr_data(path) tnmr_data = dn...
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def focal_loss( y_true, y_pred, alpha=[1-0.25, 0.25], gamma=2.0, from_logits=False ): """ Computes the multi-class focal loss, with class balancing parameter. Parameters ---------- y_true : tensor Targets of shape [num_targets,]. y_pre...
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import aeneas.cdtw.cdtw import aeneas.cmfcc.cmfcc import aeneas.cew.cew def can_run_c_extension(name=None): """ Determine whether the given Python C extension loads correctly. If ``name`` is ``None``, tests all Python C extensions, and return ``True`` if and only if all load correctly. :param st...
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def _merge_surrogates(text): """Returns a copy of the text with all surrogate pairs merged""" return _decode_surrogatepass( text.encode("utf-16-le", _surrogatepass), "utf-16-le")
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import glob import os def findChessboards(imageDirectory): """ Calculates the object points and image points of chessboard images :param imageDirectory: the directory to look through for chessboard images :return: names of the files, the object points list, the image points list, resolution of the cam...
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def show_nums_to_user(): """ 093 Ask the user to enter five numbers. Sort them into order and present them to the user. Ask them to select one of the numbers. Remove it from the original array and save it in a new array. :return: new array with one (popped) item. """ arr, trigger = [], 5...
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from re import X def player(board): """ Returns player who has the next turn on a board. """ if terminal(board): return elif board == initial_state(): return X else: no_of_X = 0 no_of_O = 0 for row in board: no_of_X += row.count("X") ...
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def seq_type(seq): """ Determines whether a sequence consists of 'N's only (i.e., represents a gap) """ return 'gap' if set(seq.upper()) == {'N'} else 'bases'
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from typing import Tuple def get_rows_and_columns(num_plots: int) -> Tuple[int, int]: """Get optimal number of rows and columns to display figures. Parameters ---------- num_plots : int Number of subplots Returns ------- rows : int Optimal number of rows. cols : int ...
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from typing import Union import ast def get_fixture_decorator(node: AnyFunctionDef) -> Union[ast.Call, ast.Attribute, None]: """ Returns a @pytest.fixture decorator applied to given function definition, if any. Return value is either: * ast.Call, if decorator is written as @pytest.fixture() * ast...
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def do__AcmeV2_AcmeOrder__acme_server_sync( ctx, dbAcmeOrder=None, authenticatedUser=None, ): """ :param ctx: (required) A :class:`lib.utils.ApiContext` instance :param dbAcmeOrder: (required) A :class:`model.objects.AcmeOrder` object to refresh against the server :param authenticatedUser: (...
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def static_equilibrium(topology, tmax=100, eta=1e-6, verbose=False, callback=None): """ Generate a form diagram in static equilibrium. Parameters ---------- topology : :class:`compas_cem.diagrams.TopologyDiagram` A topology diagram. tmax : ``int``, optional Maximum number of ite...
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from random import shuffle def chooselabelsubset(lst, n, method): """Chooses a subset of the given list, using the given method: start: from the beginning end: from the end random: randomly """ # pick the the trainpos and trainneg sets def randindexes(lst): """Ret...
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import logging def create_logger() -> logging.Logger: """ Creates a logging object to be used for reports. """ # Gets a logger object with the name 'gol_logger' and sets the log level to INFO. # # Sets an absolute path log_path to the log file _Resources/gol.log, then runs # logging.FileHandler t...
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def s_quantifier(num, quantifier): """S quantifier.""" return quantifier_selector(num, quantifier, f'{quantifier}s')
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def get_monitor_info_a(h_monitor): """ BOOL GetMonitorInfoA( HMONITOR hMonitor, LPMONITORINFO lpmi ); """ return __get_monitor_info(WINDLL.user32.GetMonitorInfoA, h_monitor)
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def textdeskew(image): """ Function that calculates a the rotation angle for documents that are already properly scanned. Using the angle, it tries to deskew. Useful in cases where there is no difference between foreground and background, and the document is properly scanned. """ gray = cv2.cvtColor(image, cv...
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def group_arguments(seq, group=254): """ group the list into lists of 254 items each. This is due to argument restrictions in python. http://docs.djangoproject.com/en/dev/topics/http/urls/#patterns """ return (seq[pos:pos + group] for pos in range(0, len(seq), group))
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from typing import List from typing import Union from typing import Dict def get_reduction_mask(inputs: List[Union[Chord, Key]], kwargs: Dict = None) -> List[bool]: """ Return a boolean mask that will remove repeated inputs when applied to the given inputs list as inputs[mask]. Parameters -------...
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import traceback def generate_requirement_image( learn_guide_project, ): # pylint: disable=too-many-statements """Generate a single requirement image""" def make_line( requirement_name, position=(0, 0), icon=None, hidden=False, triangle_icon=None ): # pylint: disable=too-many-branches ...
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from typing import Optional import contextlib import socket def resolve(hostname: str) -> Optional[str]: """ Get the IP address of a subdomain """ with contextlib.suppress(socket.gaierror): return socket.gethostbyname(hostname)
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from typing import List from typing import Dict def get_researcher_allowed_studies(request: ResearcherRequest) -> List[Dict]: """ Return a list of studies which the currently logged-in researcher is authorized to view and edit. """ kwargs = {} if not request.session_researcher.site_admin: ...
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def fast_non_dominated_sort(values1, values2): """ Function to carry out NSGA-II's fast non dominated sort """ S = [[] for i in range(0, len(values1))] front = [[]] n = [0 for i in range(0, len(values1))] rank = [0 for i in range(0, len(values1))] for p in range(0, len(values1)): S[p] =...
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def generate_list(n,idx_excl,n_rand): """ random_array = generate_list(n,idx_excl,n_rand) Generates a list Parameters ---------- n : INT, total number of samples idx_excl : 2D array, start,stop index for each seizure n_rand : INT, number of random samples Returns ------- 1D...
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def _neighboring_points(o_index, i_index, e_len, f_len): """ A function that returns list of neighboring points in an alignment matrix for a given alignment (pair of indexes) """ result = [] if o_index > 0: result.append((o_index - 1, i_index)) if i_index > 0: result.append(...
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import io import base64 import json def pose_estimate(event, context): """Perform human pose estimation.""" try: # Get image from the request picture, filename = fetch_input_image(event) image = load_image(picture) print('Loading model') model = Model(MODEL_PATH) ...
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import collections def CreateAssocVarPairs(rappor_metrics): """Yield a list of pairs of variables that should be associated. For now just do all (string x boolean) analysis. """ var_pairs = collections.defaultdict(list) for metric, var_list in rappor_metrics.iteritems(): string_vars = [] boolean_v...
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import copy def function_tester(rng, func, ref_func, inputs, func_args=[], func_kwargs={}, atol_f=1e-6, atol_b=1e-3, atol_accum=1e-6, dstep=1e-3, backward=None, ctx=None, func_name=None, ref_grad=None, disable_half_test=False): """ Automatic testing of f...
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import sys import turicreate as tc import os def show(x, y, xlabel="X", ylabel="Y", title=None): """ Plots the data in `x` on the X axis and the data in `y` on the Y axis in a 2d visualization, and shows the resulting visualization. Uses the following heuristic to choose the visualization: * If `...
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def read_text(unformatted_text: str) -> str: """Open text from the file or read it directly. Arguments: unformatted_text (str): path to a file OR inputed text Returns: str: reads and returns text as a string """ try: with open(unformatted_text, "rt") as f: # cre...
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def regions(**kw_params): """ Get all available regions for the EC2 service. You may pass any of the arguments accepted by the VPCConnection object's constructor as keyword arguments and they will be passed along to the VPCConnection object. :rtype: list :return: A list of :class:`boto.ec2....
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def read_from_txt(txt_file: str = "untitled.txt") -> list: """Opens a text file to get all words, called from outside the class instantiation""" with open(txt_file, "r") as words: lines = words.readlines() return [ line.split(".")[1].strip().upper() for line in lines ]
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def extensionOP(extension): """ Get an extension's associated operator :param extension: the extension :return: the DAT source of extension or the internal parameters' comp or None if undetermined """ eop = None if isinstance(extension, ParCollection): # assume internal parameters eop = extension.stdswi...
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import tokenize def _integerize(json_data, word_to_id, dataset): """Transform words into integers.""" sequences = np.full((len(json_data), MAX_TOKENS_SEQUENCE[dataset]), word_to_id[PAD], np.int32) sequence_lengths = np.zeros(shape=(len(json_data)), dtype=np.int32) for i, sentence in enum...
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def plot_pq_all(mean_arr, std_arr, label_list, title='QP_accu', metric='rmse', ax=None, colors=None, alpha=0.5): """Generate a summary QP plots with different methods. Args: mean_arr (np.ndarray): Mean performance of each method at a certain quantile, (#methods, #quantiles)....
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import numpy def rechannel(channels): """A data node to rechannel data. Parameters ---------- channels : int or list The channel mapping. Receives ------ data : ndarray The original signal. Yields ------ data : ndarray The rechanneled signal. """ ...
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def prepare_traveler_from_raw_data(trips: list): """ Construct a traveler by combining a list of single trips :param trips: :return: """ traveler_chekins = [] for trip in trips: traveler_chekins = traveler_chekins + generate_checkins(trip) return sorted(traveler_chekins, key=lamb...
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def spglib_get_primitive(struct, **kwds): """Find primitive structure for given :class:`~pwtools.crys.Structure`. If `struct` is irreducible (is already a primitive cell), we return None, else a Structure. Uses spglib. Parameters ---------- struct : Structure **kwds : keywords ...
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import asyncio async def async_query_for_ptr_with_proto(protocol, ips_to_lookup): """Send and receiver the PTR queries.""" time_outs = 0 query_for_ip = {} for ip in ips_to_lookup: req = async_generate_ptr_query(ip) query_for_ip[ip] = req.id try: await asyncio.wait_f...
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def fft_shift_phasor_2d(shape, offset, grad=False): """Return phasor array used to shift an array (in real space) by multiplication in fourier space. Parameters ---------- shape : (int, int) Length 2 iterable giving shape of array. offset : (float, float) Offset in array ele...
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def get_ar(bbox): """ :param bbox: top left, right down :return: aspect ratio """ [x1, y1, x2, y2] = bbox return (y2 - y1) / (x2 - x1)
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def log_p_xi(meanLike, covarLike, xi): """ Calculate log-likelihood of a single xi, given its mean/covar after collapsing P(A | X_{-i}, Z) """ D = float(xi.shape[1]) ll = -(D / 2) * np.log(covarLike) ll -= (1 / (2 * covarLike)) * np.power(xi - meanLike, 2).sum() return ll.item()
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def get_statsTable(dType, dFreq, df, dates_as_index=True, ptiles=None): """ Construct detailed tables with summary statistics. Parameters ___________ dType : str Dataset type of the portfolios. Possible choices are: * ``Returns`` * ``Factors`` * ``NumFir...
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def has_parameter(param_key_matcher, param_value_matcher): """Check values of the stacks parameters.""" return StackParameterMatcher(wrap_matcher(param_key_matcher), wrap_matcher(param_value_matcher))
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import glob def get_run_files_from_formatter(run_id, formatter, **kwargs): """Get a set of files for a particular run Parameters ---------- run_id : `str` The number number we are reading formatter : `FilenameFormat` Object that constructs the file naem kwargs Passed t...
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def create_assigment_rule(sbml_model: libsbml.Model, assignee_id: str, formula: str, rule_id: str = None, rule_name: str = None) -> libsbml.AssignmentRule: """Create SBML AssignmentRule Arguments: sb...
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def regula_falsi(f: Function, xi: float, xf: float, tol: float, iter: bool = False) -> float: """ Regula Falsi ============ Regula falsi method to find a root of a function Parameters ---------- f : Function Function xi : float First point xf : float Sec...
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def SelectCard(): # Method Description: """Selects A Card Using A Terminal As UI""" # Endless Loop Till User Enters A Valid Card Number while(True): # Prompt user to select card i= int(input("Please choose a card: ")) # If the position entered is correct if (i > 0) and (...
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def temperature_salinity_timeseries( temperature, salinity, colors, data_date, prediction, bloom_dates, titles, ): """Create a time series plot figure object showing temperature on the left axis and salinity on the right. """ fig = matplotlib.figure.Figure(figsize=(15, 4.25), facecolor=colors['bg'])...
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import pandas def readCSVfile(fileName): """twitter_follower_yyyymmdd_hhMMss.csv を開く""" lines = pandas.read_csv(fileName, encoding="utf8") return lines
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import tempfile import os def return_testvideo_path(): """ returns Test video path """ path = "{}/Downloads/Test_videos/BigBuckBunny_4sec.mp4".format( tempfile.gettempdir() ) return os.path.abspath(path)
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def validate_image_pull_credentials(image_pull_credentials): """ Validate ImagePullCredentialsType for Project Property: Environment.ImagePullCredentialsType """ VALID_IMAGE_PULL_CREDENTIALS = ("CODEBUILD", "SERVICE_ROLE") if image_pull_credentials not in VALID_IMAGE_PULL_CREDENTIALS: ...
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def dynamic_import_st(module, backend): """Import ST models dynamically. Args: module (str): module_name:class_name or alias in `predefined_st` backend (str): NN backend. e.g., pytorch, chainer Returns: type: ST class """ model_class = dynamic_import(module, predefined_st....
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def num_bits(i): """Returns the number of bits in an unsigned integer.""" n = 0 while i: n += 1 i &= i - 1 return n
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import argparse def get_args(): """parse arguments :returns: parsed arguments """ #Command line arguments parser. Described as in their 'help' sections. parser = argparse.ArgumentParser(description="Replication of Zaremba et al. (2014).\ \n https://arxiv.org/abs/1409.2329") parser.add...
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def available_solvers(): """Returns a list of all available solvers. These can be used in :func:'optunity.make_solver'. """ return solver_registry.solver_names()
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import math def coefficient_of_drag_adjusted(state, only_in_range=False): """ Calculate the coefficient of drag. The drag is calculated by a bilinear interpolation from values spaced evenly through Mach values and log10 Reynolds numbers. These values were initially computed from one of the other...
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def mock_config_entry() -> MockConfigEntry: """Return the default mocked config entry.""" return MockConfigEntry( domain=DOMAIN, data={CONF_HOST: "192.168.1.123", CONF_MAC: "aabbccddeeff"}, )
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def placeholder(shape=None, ndim=None, dtype=None, sparse=False, name=None): """Instantiates a placeholder tensor and returns it. # Arguments shape: Shape of the placeholder (integer tuple, may include `None` entries). ndim: Number of axes of the tensor. At least one of ...
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