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def read_one(person_id): """ This function responds to a request for /api/people/{person_id} with one matching person from people :param person_id: Id of person to find :return: person matching id """ # Get the person requested person = Person.query.filter(Person.person_id ...
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import numpy as np def getPointsProjectedToPlane(pointsArray, planePosition, planeNormal): """ Returns points projected to the plane in world coordinate system and in the plane coordinate system, and an array of booleans that tell if the point was above/below the plane. pointsArray contains each point as a co...
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def diff_one_tc(x: int, y: int) -> int: """Compute x - y. This problem has only one test case to make inspecting the specific error message easier. """ return x - y
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from re import S def reduce_rational_inequalities(exprs, gen, relational=True): """ Reduce a system of rational inequalities with rational coefficients. Examples ======== >>> x = Symbol('x', real=True) >>> reduce_rational_inequalities([[x**2 <= 0]], x) Eq(x, 0) >>> reduce_rational_i...
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def read(string: str) -> dict: """Parse an ordered map file. :arg string: Content of an ordered map file. :returns: An ordered map. """ data = {} for line in string.split('\n'): if line and line[0] not in ('#', ' ', '\t', '\r'): data = _merge(data, _deserialise(line)) r...
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def _generate_indicators(catalog, validator=None, only_numeric=False, broken_links=False, verify_ssl=True, url_check_timeout=1, broken_links_threads=1): """Genera los indicadores de un catálogo individual. Args: catalog (dict): diccionario de un data.js...
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import numpy def metric_weekday(weekday_1, weekday_2): """Calculate the distance between two weekdays as a positive integer. :param weekday_1: A positive integer between 0 and 6 :param weekday_2: A positive integer between 0 and 6 :returns: The absolute valued distance between two weekdays :rtype...
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def apply_tweet_text_preprocessing(text: str) -> str: """Make Text Preprocessor object and apply some basic techniques to preprocess tweet text. Args: - text(str) Returns: - preprocessed_text(str) Note: - We opt for lemmatizing in this use case, just that the example output looks...
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def addheader(datasets): """ The columns of the pandas data frame are numbers this function adds the column labels Parameters ---------- datasets : list List of pandas dataframes """ header = get_header() for i in range(0, len(datasets)): datasets[i].columns = header...
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def gain_filt(b, a): """Step response from filter (used as initial conditions later) Parameters ---------- b: ndarray filter coefficients a: ndarray filter coefficients Returns ------- zi : ndarray step response as a vector """ # max. length of coefficie...
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def vax_pacient(ime, priimek, cepivo): """Funkcija v bazi popravi podatek o cepljenu dolocenega pacienta. Ce osebe ni v bolnici, je nemoremo cepiti. Pravice ima samo zdravnik.""" return None
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import pickle def read_results_pickle(path): """Reads a resultset from a pickle file. Parameters ---------- path : str The file path from which results are read Returns ------- results : ResultSet The read result set """ with open(path, 'rb') as pickle_file: ...
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def get_sample_mean(values: list) -> float: """ Calculates the sample mean (overline x) of the elements in a list :param values: list of values :return: sample mean """ sample_mean = sum(values) / len(values) return sample_mean
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def _encode_raw_complex(data, prm): """ Encode raw complex data.""" payload, content_type = prm.encode_raw(data) return ResultAlt(payload, identifier=prm.identifier, content_type=content_type)
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def polyfill_integers(generator, low, high=None, size=None, dtype="int32", endpoint=False): """Sample integers from a generator in different numpy versions. Parameters ---------- generator : numpy.random.Generator or numpy.random.RandomState The generator to sample from. I...
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import os def which(program): """This method is not my code, thanks to Jay http://stackoverflow.com/a/377028/248220""" def is_exe(fpath): return os.path.isfile(fpath) and os.access(fpath, os.X_OK) fpath, fname = os.path.split(program) if fpath: if is_exe(program): return p...
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def rotate(points, rot_vecs): """Rotate points by given rotation vectors. Rodrigues' rotation formula is used. Args: points (array): points to rotate rot_vecs (TYPE): rotation vector Returns: TYPE: rotated points """ theta = np.linalg.norm(rot_vecs, axis=1)[:, np.newax...
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from typing import Optional def sigU(backend: Optional[BackendType] = None, dtype: Optional[DtypeType] = None) -> tn.Tensor: """ Pauli 'up' matrix. Args: backend: The backend. dtype : dtype of data. Returns: U : The Pauli U matrix, a tn.Tensor. """ vals = [[0., 1], [0...
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def add_trapeziums(dfmmodel, principe_profielen_bov_df, principe_profielen_ben_df, closed=False): """Add trapezium profiles on branches with missing crosssections.""" #siebe 22-6-2021: nu twee dataframes: een voor bovenstrooms een voor benedenstoomse zijde tak xs = dfmmodel.crosssections for branch in x...
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def get_one_uniform_value(value_range_or_upper_bound, lower_bound=0): """ return a random value from a specified interval or [0, 1] :param value_range_or_upper_bound: list or upper and lower limits or float of upper bound :param lower_bound: float, lower limit :return: single float value """ ...
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def efficientnet_b2c(in_size=(260, 260), **kwargs): """ EfficientNet-B2-c (like TF-implementation, trained with AdvProp) model from 'EfficientNet: Rethinking Model Scaling for Convolutional Neural Networks,' https://arxiv.org/abs/1905.11946. Parameters: ---------- in_size : tuple of two ints, de...
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def tapis_user(token: str = Depends(tapis_token)): """Get Tapis user profile for the provided token.""" try: t = _client(token) except BaseTapyException as exc: raise HTTPException( status_code=status.HTTP_401_UNAUTHORIZED, detail="Token was not valid: {0}".format(exc...
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import numpy def get_device(arg=None): """Gets the device from ID arg or given chainer's. :class:`~pycuda.gpuarray.GPUArray`. Args: arg: Value to specify a GPU device. Returns: Device object specified by given ``arg``. The rule of device selection is following. ===========...
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def read_csv_into_df_with_header(csv: str): """ and also set datatimeindex csv has to have a column as 'DateTime' Parameters ---------- csv : Returns ------- pd.DataFrame """ df = pd.read_csv(csv, na_values=['-9999']) df['DateTimeIndex'] = pd.to_datetime(df['DateTime']) ...
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def find_node_named_graph(dataset, node): """ Search through each graph in a dataset for one node, when it finds it, returns the graph it is in :param dataset: :param node: :return: """ if isinstance(node, rdflib.Literal): raise RuntimeError("Cannot search for a Literal node in a dat...
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def iqr(data_list): """ Interquartile range of the data Inputs: data_list - a list of floats Outputs: val - The interquartile range of the data """ n = count(data_list) cnt = n//2 if cnt ==0: return 'NaN' data_list.sort() l_half = data_list[:cn...
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def _get_prediction(outputs): """Checks if multiple outputs were provided, and selects""" if isinstance(outputs, (list, tuple)): return outputs[0] return outputs
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def plot_gb_mean_errorbar(df_m, df_s): """ In: df_m: results of df.groupby().mean() renamed to have mean in col names df_s: result of df.groupby().std() renamed to have std in col names Returns: list of CustomVis objects """ # tog = df_m.join(df_s, lsuffix=" (mean)", rsu...
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import shlex import os import re def Sync(skia_revision=SKIA_REV_DEPS, chrome_revision=CHROME_REV_LKGR, fetch_target=DEFAULT_FETCH_TARGET, gyp_defines=None, gyp_generators=None): """ Create and sync a checkout of Skia inside a checkout of Chrome. Returns a tuple containing the actually-obtained ...
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def bot_answer(user_input): """ This function checks if the user input exists in the database and returns an answer. If the user input does not exists, it searches for for something similar to the user input and returns an answer. """ answer = switchboard.DB_getQanswer(user_input) if ans...
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def _setTextContent(df, txt_id, txt_content): """ Set the arbitrary text content. Args: df: DataFrame-initial information. txt_id: str-the text id. txt_content: str-the text content. Returns: df_temp: DataFrame-information after updates. """ df_TextDa...
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import requests def sheet(request, ally_id): """ Alliance sheet """ request_alliance = requests.get(GLOBAL_URL+f"/{ally_id}", headers=global_headers(request)) if request_alliance.status_code != 200: return render_error(request_alliance) return render(request, "alliance/sheet.html",{ ...
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import math def initWindKernel(direction, speed, c1): """ Function to generate the kernel for wind probabilities to apply into the lattice transitions. This version is for Moore's neighborhood only parameters ---------- direction: int, float Respect to a horizontal axis, the angl...
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import difflib import pprint def pprint_diff(first, second, first_name='first', second_name='second'): """Compare the pprint representation of two objects and yield diff lines.""" return difflib.unified_diff( pprint.pformat(first).splitlines(), pprint.pformat(second).splitlines(), fromfile=first...
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def declare_variable(name, shape, initializer): """Helper to create a variable.""" return tf.get_variable(name=name, shape=shape, initializer=initializer, dtype=tf.float32)
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from unittest.mock import patch import os def test_resume_module_build_failed_first_component(mock_config, tmpdir): """ We test to resume the module build from the first failed component """ cwd = tmpdir.mkdir("workdir").strpath rootdir = None mock_cfg_path = get_full_data_path("mock_cfg/fedora-35-x86...
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def delete_live_instance(live_instance_id=None): """ Delete a live streaming instance :param live_instance_id: :return: boolean """ url = get_api_base() + '/livestream/%d' % live_instance_id return RestClient.delete(url=url, headers=create_headers())
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import os import math import joblib def load_data(train_size=10000, test_size=2000, load_challenge=False, create_matrices=False, generate_data=False, create_pickle_file=True, mode="ltc", min_track_prior= 0.0): """ Fixed Path Names """ data_folder = os.path.join(os.getcwd(), 'data/mpd.v1/data/')...
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def inc(i): """Increments number. Simple types like int, str are passed to function by value (value is copied to new memory slot). Class instances and e.g. lists are passed by reference.""" i += 1 return i
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def test_linkedlist_bind(): """Test monadic bind of LinkedList Laws alone don't guarantee the desired behavior """ def f(x): return Cons(x + 100, lambda: Cons(x + 200, lambda: Nil)) xs = Cons(10, lambda: Cons(20, lambda: Nil)) expected = Cons( 110, lambda: Cons( ...
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def SoftmaxCrossEntropy(inputs, axis=1, normalization='FULL', **kwargs): """Compute the softmax cross entropy with given logits and one-hot labels. **Type Constraints**: *float32* Parameters ---------- inputs : sequence of Tensor The inputs, represent [logits, labels]. axis : int, opti...
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def checkForDonorWithRegion(op, graph, frm, to): """ Confirm donor mask exists and is selected by a SelectRegion :param op: :param graph: :param frm: :param to: :return: @type op: Operation @type graph: ImageGraph @type frm: str @t...
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def is_symbolic_tensor(tensor): """Returns whether a tensor is symbolic (from a TF graph) or an eager tensor. A Variable can be seen as either: it is considered symbolic when we are in a graph scope, and eager when we are in an eager scope. Arguments: tensor: A tensor instance to test. Returns: Tru...
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def execute_overload_ceilometer(config, state, overloaded_host, vm_uuids): """Process an overloaded host: migrate the selected VMs from it. Same as "execute_overload" except measures are collected by ceilometer. :param config: A config dictionary. :type config: dict(str: *) :param state: A state ...
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def simulate_lognormal(mu_lim, sigma_lim, count_lim): """Simulates log normal data of a specified size Parameters ---------- mu_lim : list, float The limits for selecting a mean for the log normal distributions sigma_lim : list, float The limits for selecting a standard deivation fo...
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import re def extract_video_id(string): """Extract what looks like a YouTube video id from a string""" if len(string) == 11: return string matches = re.search("v?=(.{11})", string) if matches is not None: return matches.group(1) matches = re.search(r"youtu\.be/(.{11})", string) ...
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def get_visible_cards(cards1, cards2): """Return a list of the intersection of cards1 and cards2; call only on visible cards!""" return [card for card in cards1 if card['name'] in names(cards2)]
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def phases_exponential_fit(phases_points, t, X, one_order): """ :Authors: Chuankai Cheng <chuankai@usc.edu> and J. Cameron Thrash <thrash@usc.edu> :License: MIT :Version: 1.0 :Date: 2021-03-17 :Repository: https://github.com/thrash-lab/sparse-growth-curve """ all_starting_time=phases_poi...
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def ascii(value): """Return the string of value :param mixed value: The value to return :rtype: str """ return '{0}'.format(value)
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import time import pickle import os import random def run_experiment(params, rt_environment, trial_out_dir, n_generations=100, save_results=False, silent=False, args=None): """ The function to run the experiment against hyper-parameters defined in the provided configuration file. ...
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def find_closest_date(date, list_of_dates): """ This is a helper function that works on Python datetimes. It returns the closest date value, and the timedelta from the provided date. """ match = min(list_of_dates, key = lambda x: abs(x - date)) delta = match - date return match, delta
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def FormatDateTime(duration): """Return RFC3339 string for datetime that is now + given duration. Args: duration: string ISO 8601 duration, e.g. 'P5D' for period 5 days. Returns: string timestamp """ # We use a format that preserves +00:00 for UTC to match timestamp format # returned by containe...
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def is_depth(da, loc="any"): """Tell if a data array is identified as depths Parameters ---------- da: xarray.DataArray Return ------ bool See also -------- is_lon is_lat is_altitude is_level is_time xoa.cf.CFCoordSpecs.match """ return xcf.get_cf_s...
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def num_bits_64(i): """Counts the bits in a given integer. >>> num_bits_64(7) 3 >>> num_bits_64(8) 1 >>> num_bits_64(0b1100110000000000000000000000000) 4 """ # & here converts negative integers to unsigned representation first, # so we get the correct number of bits. return bin(i & BITS_64).count...
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def replace_str_index(text, index=0, replacement=''): """ Utility function :param text: :param index: :param replacement: :return: """ return '%s%s%s' % (text[:index], replacement, text[index + 1:])
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import multiprocessing import os import subprocess import glob def multipart_upload(s3server, bucket, s3_key_name, tarball, mb_size): """Upload large files using Amazon's multipart upload functionality. """ cores = multiprocessing.cpu_count() def split_file(in_file, mb_size, split_num=5): pre...
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import traceback import time def discover_channels(path, serial_number, callback, cancellation_token, channel_termination_token, logger): """ Scans for USB devices that match the path spec. This function blocks until cancellation_token is set. Channels spawned by this function run until channel_termination_to...
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from datetime import datetime def from_timestamp(timer: int) -> datetime.datetime: """ Converts timestamp to `datetime.datetime` """ return datetime.datetime.utcfromtimestamp(timer)
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from typing import Any def arg(name: str, value: Any) -> str: """ >>> arg("x", 1) '`x`: <builtins.int> 1' """ return f"{tick(name)}: {val(value)}"
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from collections import Counter def solve_part_one(id_list: list) -> int: """ Calculates the checksum for a list of IDs :param id_list: Python list containing a list of ID strings :return: Checksum as defined by the problem """ twos, threes = 0, 0 for id in id_list: id_counter = C...
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def search(lookup): """ Search for a reference on arXiv.org given a lookup string. Since the arXiv.org api can return mutiple references for a single query, this function raises an error in the case that more than one reference was returned. :param lookup: String with the lookup to search for on ar...
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def id_in_use(id_key, id_key_value, dict): """ Return true if an ID is already in use. """ for value in dict.values(): if value[id_key] == id_key_value: return True return False
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def is_prerelease(version_str): """ Checks if the given version_str represents a prerelease version. """ return any([c.isalpha() for c in version_str])
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def _wrap_with_after(responder, action, action_args, action_kwargs, is_async): """Execute the given action function after a responder method. Args: responder: The responder method to wrap. action: A function with a signature similar to a resource responder method, taking the form ``...
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def text_analysis(request: dict = Body(..., examples=analysis_examples), #index: str = Path(default='country') ): """ The *analyze* endpoint allows you test out how your data will be analyzed and indexed. The default behaviour is for your search terms to be analyz...
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import re def class_name_to_resource_name(class_name: str) -> str: """Converts a camel case class name to a resource name with spaces. >>> class_name_to_resource_name('FooBarObject') 'Foo Bar Object' :param class_name: The name to convert. :returns: The resource name. """ s = re.sub('(.)...
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def datetime_to_date(dt, org): """ Convert a datetime to a date using the given org's timezone """ return dt.astimezone(org.timezone).date()
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def raw_updates(): """Test 5: Database Updates""" connection = dbraw_engine.connect() try: num_queries = request.args.get('queries', 1, type=int) if num_queries < 1: num_queries = 1 if num_queries > 500: num_queries = 500 worlds = [] rp = part...
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import numpy def correlate(x1, x2, mode='valid'): """ Cross-correlation of two 1-dimensional sequences. For full documentation refer to :obj:`numpy.correlate`. Limitations ----------- Input arrays are supported as :obj:`dpnp.ndarray`. Size and shape of input arrays are supported to be eq...
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def virtual_machine_names_to_container_names(configuration): """ convert virtual machine names to container names using configuration Args: configuration: user final configuration Returns: list of container name in array """ return [ "{0}_{1}".format( configu...
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def index(): """For testing the application on the browser during development""" return jsonify({'message': 'This is the home page'})
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import requests def current_server_id() -> str: """Helper to get the current server id""" rsp = requests.get("http://localhost:10000/api/servers") if rsp.status_code != 200: raise ValueError("Failed to fetch current server id") return rsp.json()['current_server']
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def get_pandas_read_csv_and_dropna_code(): """ Get a simple code snipped that loads the adult_easy data and runs dropna """ code = cleandoc(""" import os import pandas as pd from mlinspect.utils import get_project_root train_file = os.path.join(str(get_pr...
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def mean_std_cross_val_scores(model, X_train, y_train, **kwargs): """ Returns mean and std of cross validation Parameters ---------- model : scikit-learn model X_train : numpy array or pandas DataFrame X in the training data y_train : y in the training data Retu...
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def needs_dataset(*names, default=None): """ Decorator for skipping methods when the needed atomic data is not available """ non_ion_datasets = ['abundance', 'ip', 'ioneq'] names = [f'_{n}' if n not in non_ion_datasets else f'{n}' for n in names] def decorator(func): @wraps(func) ...
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def linkcode_resolve(domain, info): """Oddly this function is required for the linkcode extension.""" if domain != "py": return None if not info["module"]: return None filename = info["module"].replace(".", "/") return "https://github.com/farisachugthai/dynamic_ipython/%s.py" % file...
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import os def get_name(main_title, folder, sep="_"): """ Obtains the next valid name basd on given filename and count Args: main_title (str): Main portion to define naming scheme. folder (str): Folder to be stored in. No '/' or '\' required. sep (str): A separator between maint_title ...
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def _read_airports_file(input_file=None): """Read the airports file.""" if input_file is None: input_file = get_test_data('airport-codes.csv', as_file_obj=False) df = pd.read_csv(input_file) station_map = pd.DataFrame({'id': df.ident.values, 'synop_id': 99999, 'la...
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from typing import List from typing import Dict def out_edge_node_mapper( nodes: List[GraphVizNode] ) -> Dict[str, List[GraphVizNode]]: """ A function that maps a published topic to the publisher node @params: nodes: The list of nodes of the graph @return: A dictionary where the key is t...
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def CircularHarmonicCaDihedralConstraints(a,b,c,d,value,tol): """ Returns properly formated string for declaring harmonic dihedral angle constraints between CA carbons of resiedues a, b, c and d at angle "value", and "tol" standard deviation. Angles of 0 and 360 are treated as being next to each oth...
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from sys import version_info def decode_unicode_hook(json_pairs): """ Given json pairs, properly encode strings into utf-8 for general usage :param json_pairs: dictionary of json key-value pairs :return: new dictionary of json key-value pairs in utf-8 """ if version_info >= (3, 0): # is 3.X ...
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import torch def create_sample(G, sample_size, z_size, seed): """ Create a sample. returns ------- A set saple z. """ torch.manual_seed(seed) fixed_z = np.random.uniform(-1, 1, size=(sample_size, z_size)) fixed_z = torch.from_numpy(fixed_z).float() if gpu_available: ...
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def get_data_day(data: pd.DataFrame) -> np.array(int): """Get weekday/weekend designation value from data. :param pd.DataFrame data: the data to get day of week from. :return: (*np.array*) -- indicates weekend or weekday for every day. """ return data["If Weekend"]
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def next_mesh_data_loader_uuid(): """Return the next uuid of a mesh data loader.""" global mesh_data_loader_counter mesh_data_loader_counter = (mesh_data_loader_counter + 1) % (1 << 60) return mesh_data_loader_counter
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def generate_emb_features(data, ft_model, window_size=5): """method for generating embeddings features Args: data: dict representation of conll file ft_model: fasttext embeddings window_size: how many neighbors to use Returns: dict: key: mention_id value: embedding_features...
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def log(input_t): """ Element-wise natural logarithm. """ return log_op(input_t)
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from typing import Dict from typing import Any from typing import Tuple import json def fetch_incidents(client: Client, last_run: Dict[str, Any], args: Dict[str, Any], call_from_test=False) -> Tuple[dict, list]: """ This function is called for fetching incidents. This function ...
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def guess_gender(name): """ Given a person's name guess their gender. Returns either ``'m'`` or ``'f'``. """ names = name.split() if names[0] == 'Sankt': first_name = names[1] else: first_name = names[0] try: return _GENDER_EXCEPTIONS[first_name] except KeyEr...
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def index(): """Return the main page.""" restaurants = ["amelie_nyc", "lovemama_nyc", "upstate_nyc"] return render_template("index.html", restaurants=restaurants)
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def stefan_boltzmann(radius, temperature): """Calculate the luminosity for a spherical blackbody following from Stefan-Boltzmann. Parameters ---------- radius: float The radius of the sphere. temperature: float The temperature of the blackbody. Returns ------- lum: ...
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def put_keys_in_numerical_order(keys): """ Takes a list of hookup keys in the format of prefix+number:revision and puts them in number order. Returns the ordered list of keys """ keylib = {} n = None for k in keys: colon = k.find(':') for i in range(len(k)): try: ...
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def parse_input() -> list[int]: """ Parses the input and returns a list of depth measurements. """ with open(INPUT_FILE, "r") as f: return [int(line) for line in f]
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def apply_smoothing(image, kernel_size=5): """ kernel_size must be postivie and odd """ return cv2.GaussianBlur(image, (kernel_size, kernel_size), 0)
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def convert_trie_to_flat_paths(trie, prefix=None): """Converts the directory structure in the given trie to flat paths, prepending a prefix to each.""" result = {} for name, data in trie.iteritems(): if prefix: name = prefix + "/" + name if len(data) and not "results" in data: ...
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def build_cptp_data(db_path, db_name): """Builds training sets files for the SPMF library. Training sets files created using the DB. A training set file in the format expected by the java SPMF library: ' -1 ' between each number within a sequence and ' -2' to end a sequence (see `SPMF/CPT+ docs <http:/...
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def reflection_matrix( point: np.ndarray, normal: np.ndarray ) -> np.ndarray: """ Return matrix to mirror at plane defined by point and normal vector. Reference: https://en.wikipedia.org/wiki/Transformation_matrix#Reflection_2 """ normal = unit_vector(normal[:3]) M = np.identity(4) ...
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def draw_hexagon(image=None, coordinates=None, radius=None, thickness=None, color_hex=None, radius_dot=None, color_dot=None, polygon_bool=None, draw_dots_bool=None): """ Generate a regular hexagon on a given image canvas with dots along the edge :param image: Pillow/PIL Imag...
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def tsem(a, limits=None, inclusive=(True, True), axis=0, ddof=1): """ Compute the trimmed standard error of the mean. This function finds the standard error of the mean for given values, ignoring values outside the given `limits`. Parameters ---------- a : array_like array of value...
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def _parse_ligand_sdf(input_file): """ Function to parse a series of ligands - return RDKit mols. :param input_file: the file to parse :param input_type: the type of ligands :return: the molecules parsed """ mols = Chem.SDMolSupplier(input_file) return mols
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from typing import Union from typing import Type from typing import Dict from typing import List def get_anomalies_confidence_interval( ts: "TSDataset", model: Union[Type["ProphetModel"], Type["SARIMAXModel"]], interval_width: float = 0.95, in_column: str = "target", **model_params, ) -> Dict[str,...
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