Datasets:
File size: 7,643 Bytes
b040668 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 | """Checks for scripts/split_qc_figures.py.
The split is only safe if the archives it produces, taken together, extract to
exactly the tree the original archive extracted to. Everything here is built in a
temporary directory; no repository archive is touched.
Run:
python scripts/test_split_qc_figures.py
"""
import filecmp
import os
import shutil
import sys
import tempfile
import zipfile
sys.path.insert(0, os.path.dirname(os.path.abspath(__file__)))
from split_qc_figures import is_figure_entry, plan_shards, split_one # noqa: E402
PASS = FAIL = 0
def check(cond, label, detail=""):
global PASS, FAIL
if cond:
PASS += 1
print(f" ok {label}")
else:
FAIL += 1
print(f" FAIL {label} {detail}")
def section(title):
print(f"\n=== {title} ===")
def build_archive(path, entries):
with zipfile.ZipFile(path, "w", zipfile.ZIP_DEFLATED) as z:
for name, data in entries:
z.writestr(name, data)
def extract(zip_paths, dest):
os.makedirs(dest, exist_ok=True)
for p in zip_paths:
with zipfile.ZipFile(p) as z:
z.extractall(dest)
return dest
def tree(root):
out = {}
for dirpath, _, files in os.walk(root):
for f in files:
full = os.path.join(dirpath, f)
out[os.path.relpath(full, root)] = os.path.getsize(full)
return out
# ---------------------------------------------------------------- 1. classifier
section("1. the figure classifier matches directories, not lookalike names")
for name in [
"X/Landmarks-fig/a.png",
"X/Landmarks-Label1-fig-v1.4.0/a.png",
"X/Landmarks-fig-w-projection/b.png",
"X/X-subset/Landmarks-Label2-fig-v1.4.0/s.png", # deep nesting: BraTS24 / MSD
"X/Landmarks-PSMA-Label1-fig-v1.2.0/c.png",
]:
check(is_figure_entry(name), f"figure: {name}")
for name in [
"X/Landmarks-Label1-v1.4.0/plan.json.gz",
"X/config-notes.txt", # holds 'fig', lacks '-fig'
"X/benchmark_plan_biometry_v1.4.0.json.gz",
"X/figures.txt", # 'fig' at the start of a component, still not '-fig'
"X/X-subset/Landmarks-Label2-v1.4.0/plan.json.gz",
]:
check(not is_figure_entry(name), f"kept: {name}")
# ------------------------------------------------------------------- 2. packing
section("2. shard packing respects the byte ceiling")
class FakeInfo:
def __init__(self, size):
self.compress_size = size
shards = plan_shards([FakeInfo(30) for _ in range(10)], shard_bytes=100)
check(all(sum(i.compress_size for i in s) <= 100 for s in shards), "no shard exceeds the ceiling")
check(sum(len(s) for s in shards) == 10, "every entry is placed exactly once")
oversized = plan_shards([FakeInfo(500)], shard_bytes=100)
check(len(oversized) == 1 and len(oversized[0]) == 1, "an entry larger than the ceiling still ships")
check(len(plan_shards([FakeInfo(10)], shard_bytes=100)) == 1, "a small set stays in one shard")
# ------------------------------------- 3. round-trip: split then extract == original
section("3. split archives re-extract to the original tree")
tmp = tempfile.mkdtemp(prefix="qcfig-test-")
try:
entries = [
("SYNTH/", b""),
("SYNTH/SYNTH-subset/", b""),
("SYNTH/SYNTH-subset/Landmarks-Label1-v1.4.0/plan.json.gz", b"KEEP" * 100),
("SYNTH/config-notes.txt", b"the substring fig appears here"),
("SYNTH/Landmarks-fig/a.png", os.urandom(50_000)),
("SYNTH/Landmarks-fig-w-projection/b.png", os.urandom(50_000)),
] + [
(f"SYNTH/SYNTH-subset/Landmarks-Label2-fig-v1.4.0/s{i}.png", os.urandom(40_000))
for i in range(20)
]
src = os.path.join(tmp, "SYNTH.zip")
build_archive(src, entries)
reference = extract([src], os.path.join(tmp, "reference"))
ref_tree = tree(reference)
# A 100 KB ceiling against ~1 MB of figures forces real sharding.
report = split_one(src, shard_bytes=100_000, dry_run=False)
print(f" [{report.strip()}]")
produced = sorted(f for f in os.listdir(tmp) if f.endswith(".zip"))
shard_files = [f for f in produced if "_fig" in f]
check(len(shard_files) > 1, "sharding actually happened", f"got {shard_files}")
check(
all(f.startswith("SYNTH_fig.part") for f in shard_files),
"multi-shard sets use the partNN name",
f"got {shard_files}",
)
check(
all(os.path.getsize(os.path.join(tmp, f)) <= 150_000 for f in shard_files),
"each shard stays near the ceiling",
)
# The dataset archive alone must carry no figures...
with zipfile.ZipFile(src) as z:
names = z.namelist()
check(not any(is_figure_entry(n) for n in names), "dataset archive holds no figures")
check(
any(n.endswith("plan.json.gz") for n in names) and "SYNTH/config-notes.txt" in names,
"dataset archive keeps the annotations",
)
# ...and every shard must carry nothing but figures.
for f in shard_files:
with zipfile.ZipFile(os.path.join(tmp, f)) as z:
check(
all(is_figure_entry(n) for n in z.namelist()),
f"{f} holds only figures",
)
# The restore path MedVision.py uses: extractall the dataset archive, then
# extractall every shard, into the same root.
restored = extract(
[src] + [os.path.join(tmp, f) for f in shard_files],
os.path.join(tmp, "restored"),
)
check(tree(restored) == ref_tree, "restored tree matches the original exactly")
match, mismatch, errors = filecmp.cmpfiles(
reference, restored, list(ref_tree), shallow=False
)
check(not mismatch and not errors, "every file is byte-identical", f"{mismatch} {errors}")
# Dataset-archive-only extraction is what a default user gets.
default_only = extract([src], os.path.join(tmp, "default"))
check(
all(not is_figure_entry(p.replace(os.sep, "/")) for p in tree(default_only)),
"a default download contains no figures",
)
# ------------------------------------------------------- 4. idempotent re-run
section("4. re-running is a no-op")
again = split_one(src, shard_bytes=100_000, dry_run=False)
check("no figures, untouched" in again, "second run leaves the archive alone", again)
# -------------------------------------------- 5. an archive without figures
section("5. an archive with no figures is never rewritten")
plain = os.path.join(tmp, "PLAIN.zip")
build_archive(plain, [("PLAIN/Landmarks-Label1-v1.4.0/plan.json.gz", b"x" * 10)])
before = os.path.getsize(plain)
msg = split_one(plain, shard_bytes=100_000, dry_run=False)
check("no figures, untouched" in msg, "reported untouched", msg)
check(os.path.getsize(plain) == before, "byte size unchanged")
check(not os.path.exists(os.path.join(tmp, "PLAIN_fig.zip")), "no empty figure archive created")
# ------------------------------------------- 6. single shard keeps plain name
section("6. a figure set under the ceiling uses <name>_fig.zip")
small = os.path.join(tmp, "SMALL.zip")
build_archive(
small,
[
("SMALL/Landmarks-Label1-v1.4.0/plan.json.gz", b"k" * 100),
("SMALL/Landmarks-Label1-fig-v1.4.0/one.png", os.urandom(1000)),
],
)
split_one(small, shard_bytes=40_000_000_000, dry_run=False)
check(os.path.exists(os.path.join(tmp, "SMALL_fig.zip")), "named SMALL_fig.zip")
check(not os.path.exists(os.path.join(tmp, "SMALL_fig.part01.zip")), "no partNN suffix")
finally:
shutil.rmtree(tmp, ignore_errors=True)
print(f"\n{PASS} passed, {FAIL} failed")
sys.exit(1 if FAIL else 0)
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