Download manifest.json from ailab-bio/TACK-Context-Encoding: direct link, hf CLI and curl.
- Browser
- Download file 6.47 kB
-
https://huggingface.co/datasets/ailab-bio/TACK-Context-Encoding/resolve/main/manifest.json
- Command line
-
hf download hf://datasets/ailab-bio/TACK-Context-Encoding/manifest.json
-
curl -L -o manifest.json https://huggingface.co/datasets/ailab-bio/TACK-Context-Encoding/resolve/main/manifest.json
6.47 kB
| { | |
| "format": "tack-context-encoding/v1", | |
| "tackai_version": "1.0.0", | |
| "protein_space": null, | |
| "block_dims": { | |
| "assay_time": 1, | |
| "poi": 77, | |
| "e3": 24, | |
| "cell": 53, | |
| "assay": 8 | |
| }, | |
| "combined_dim": 85, | |
| "models": { | |
| "poi": "facebook/esm2_t30_150M_UR50D", | |
| "e3": "facebook/esm2_t30_150M_UR50D", | |
| "combined": "facebook/esm2_t30_150M_UR50D", | |
| "cell": "sentence-transformers/all-mpnet-base-v1", | |
| "assay": "sentence-transformers/all-mpnet-base-v1" | |
| }, | |
| "files": { | |
| "protein_embeddings_esm_model=facebook-esm2_t30_150M_UR50D_layer=18_pooling=lse_window=1022_block=poi_pca77.npz": { | |
| "block": "poi", | |
| "role": "table", | |
| "sha256": "e9e907e5201aeb7428f1b669d3756acdb18095165df36b983cf401dc9553530b", | |
| "bytes": 800974, | |
| "dim": 77, | |
| "n_keys": 395 | |
| }, | |
| "protein_embeddings_esm_model=facebook-esm2_t30_150M_UR50D_layer=18_pooling=lse_window=1022_block=poi_pca77_model.npz": { | |
| "block": "poi", | |
| "role": "pca_model", | |
| "sha256": "deef92d16903be63a1de6d99c5c9270ea65c04f6d39056f57f83e9d09398e319", | |
| "bytes": 200788, | |
| "full_dim": 640, | |
| "reduced_dim": 77 | |
| }, | |
| "protein_embeddings_esm_model=facebook-esm2_t30_150M_UR50D_layer=30_pooling=mean_rm_pc2_window=1022_block=e3_pca24.npz": { | |
| "block": "e3", | |
| "role": "table", | |
| "sha256": "1b51ee4fdaa6cb0c7f3cf2d8240261f09ec6069f184fb6cc0cc166716f886bf0", | |
| "bytes": 81426, | |
| "dim": 24, | |
| "n_keys": 57 | |
| }, | |
| "protein_embeddings_esm_model=facebook-esm2_t30_150M_UR50D_layer=30_pooling=mean_rm_pc2_window=1022_block=e3_pca24_model.npz": { | |
| "block": "e3", | |
| "role": "pca_model", | |
| "sha256": "587de277e43d950a9a85d8b1a336d6523d91f71260bc1880fcd740da8455c1ec", | |
| "bytes": 64896, | |
| "full_dim": 640, | |
| "reduced_dim": 24 | |
| }, | |
| "protein_embeddings_esm_model=facebook-esm2_t30_150M_UR50D_layer=18_pooling=lse_window=1022_block=combined_pca85.npz": { | |
| "block": "combined", | |
| "role": "table", | |
| "sha256": "a34d98ea0f0c5c5ecaa49dd29e6b23ca9c66abd9a238ebac83266d3f4b4cadc9", | |
| "bytes": 892670, | |
| "dim": 85, | |
| "n_keys": 442 | |
| }, | |
| "protein_embeddings_esm_model=facebook-esm2_t30_150M_UR50D_layer=18_pooling=lse_window=1022_block=combined_pca85_model.npz": { | |
| "block": "combined", | |
| "role": "pca_model", | |
| "sha256": "d2ec617765efff7a94fc74751e3ca5e21cc6a893d17c3130e65301a3e2bf82d9", | |
| "bytes": 221300, | |
| "full_dim": 640, | |
| "reduced_dim": 85 | |
| }, | |
| "cell_embeddings_model=sentence-transformer_pooling=mean_pca53.npz": { | |
| "block": "cell", | |
| "role": "table", | |
| "sha256": "250237fe4524c1fa17aa367adcffa668070cfc856238ae41ad8514e87138cb34", | |
| "bytes": 169994, | |
| "dim": 53, | |
| "n_keys": 362 | |
| }, | |
| "cell_embeddings_model=sentence-transformer_pooling=mean_pca53_model.npz": { | |
| "block": "cell", | |
| "role": "pca_model", | |
| "sha256": "ffedc3e044f8b6fa2b1b8a595f5ce9717bac412114f3a1960be529f8f3366948", | |
| "bytes": 166900, | |
| "full_dim": 768, | |
| "reduced_dim": 53 | |
| }, | |
| "assay_embeddings_vocab=open26_model=all-mpnet-base-v1_pooling=mean_pca8.npz": { | |
| "block": "assay", | |
| "role": "table", | |
| "sha256": "075cd52960c06eb48d78f5a236f7e31ddcbb02a268d067726af58127f74e3f34", | |
| "bytes": 7696, | |
| "dim": 8, | |
| "n_keys": 26 | |
| }, | |
| "assay_pca_vocab=open26_model=all-mpnet-base-v1_pooling=mean_pca8.npz": { | |
| "block": "assay", | |
| "role": "pca_model", | |
| "sha256": "e3cd72a7821fa64c3f7a8265a677e72c870c4bb3e6d745b7f79b9f18fef70bfa", | |
| "bytes": 28480, | |
| "full_dim": 768, | |
| "reduced_dim": 8 | |
| } | |
| }, | |
| "provenance": { | |
| "poi": { | |
| "model": "facebook/esm2_t30_150M_UR50D", | |
| "layer": 18, | |
| "pooling": "lse", | |
| "window": 1022, | |
| "n_sequences": 395, | |
| "embedding_dim": 640, | |
| "pca_dims": 77, | |
| "explained_variance": 0.9006981246161649, | |
| "variance_target": 0.9, | |
| "similarity_target": 0.95, | |
| "pinned_pca_dims": null, | |
| "source": { | |
| "dataset": "ailab-bio/AutoTPDplus", | |
| "repo_type": "dataset", | |
| "config": "autotpdplus-protac", | |
| "split": "train", | |
| "revision": "438177a7617386e76188e138a2c6b3da96f010f1", | |
| "pinned": false | |
| }, | |
| "generated_at": "2026-11-05T17:48:52+00:00", | |
| "tackai_version": "1.0.0" | |
| }, | |
| "e3": { | |
| "model": "facebook/esm2_t30_150M_UR50D", | |
| "layer": 30, | |
| "pooling": "mean_rm_pc2", | |
| "window": 1022, | |
| "n_sequences": 57, | |
| "embedding_dim": 640, | |
| "pca_dims": 24, | |
| "explained_variance": 0.9057356808757766, | |
| "variance_target": 0.9, | |
| "similarity_target": 0.95, | |
| "pinned_pca_dims": null, | |
| "source": { | |
| "dataset": "ailab-bio/AutoTPDplus", | |
| "repo_type": "dataset", | |
| "config": "autotpdplus-protac", | |
| "split": "train", | |
| "revision": "438177a7617386e76188e138a2c6b3da96f010f1", | |
| "pinned": false | |
| }, | |
| "generated_at": "2026-11-05T17:48:52+00:00", | |
| "tackai_version": "1.0.0" | |
| }, | |
| "combined": { | |
| "model": "facebook/esm2_t30_150M_UR50D", | |
| "layer": 18, | |
| "pooling": "lse", | |
| "window": 1022, | |
| "n_sequences": 442, | |
| "embedding_dim": 640, | |
| "pca_dims": 85, | |
| "explained_variance": 0.9003527068988317, | |
| "variance_target": 0.9, | |
| "similarity_target": 0.95, | |
| "pinned_pca_dims": null, | |
| "source": { | |
| "dataset": "ailab-bio/AutoTPDplus", | |
| "repo_type": "dataset", | |
| "config": "autotpdplus-protac", | |
| "split": "train", | |
| "revision": "438177a7617386e76188e138a2c6b3da96f010f1", | |
| "pinned": false | |
| }, | |
| "generated_at": "2026-11-05T17:48:52+00:00", | |
| "tackai_version": "1.0.0" | |
| }, | |
| "cell": { | |
| "model": "sentence-transformers/all-mpnet-base-v1", | |
| "pooling": "mean", | |
| "n_keys": 362, | |
| "n_distinct_vectors": 264, | |
| "embedding_dim": 768, | |
| "pca_dims": 53, | |
| "explained_variance": 0.9029559898291494, | |
| "variance_target": 0.9, | |
| "similarity_target": 0.95, | |
| "source": { | |
| "dataset": "ailab-bio/AutoTPDplus", | |
| "repo_type": "dataset", | |
| "config": "autotpdplus-protac", | |
| "split": "train", | |
| "revision": "438177a7617386e76188e138a2c6b3da96f010f1", | |
| "pinned": false | |
| }, | |
| "generated_at": "2026-11-05T17:48:33+00:00", | |
| "tackai_version": "1.0.0" | |
| }, | |
| "assay": { | |
| "model": "sentence-transformers/all-mpnet-base-v1", | |
| "pooling": { | |
| "per_description": "mean", | |
| "across_descriptions": "mean of unit vectors, re-normalised" | |
| }, | |
| "n_keys": 26, | |
| "n_descriptions": 3, | |
| "embedding_dim": 768, | |
| "pca_dims": 8, | |
| "explained_variance": 0.6402298212051392, | |
| "source": { | |
| "dataset": "ailab-bio/AutoTPDplus", | |
| "repo_type": "dataset", | |
| "config": "autotpdplus-protac", | |
| "split": "train", | |
| "revision": "438177a7617386e76188e138a2c6b3da96f010f1", | |
| "pinned": false | |
| }, | |
| "generated_at": "2026-11-05T17:48:48+00:00", | |
| "tackai_version": "1.0.0" | |
| } | |
| } | |
| } |