blob_id stringlengths 40 40 | length_bytes int64 7 42.8k | source stringlengths 7 42.8k | token_ids listlengths 6 15.8k | token_type_ids listlengths 6 15.8k | token_ast_depths listlengths 6 15.8k |
|---|---|---|---|---|---|
89132a2345fb3abd7ce39d3a60a13b0816c7ddb8 | 344 | # Get the private key from the environment variable
echo "Setting up DEV Connection..."
mkdir keys
echo $CERT_KEY | base64 -d > keys/server.key
# Authenticate to salesforce
echo "Authenticating..."
sfdx force:auth:jwt:grant --clientid $ORG_APP_KEY --jwtkeyfile keys/server.key --username $ORG_USERNAME --setdefaultdevhub... | [
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ad7d3dd3a4c741ce65ba89fd0ae6e2e03c7206a1 | 97 | # Report 1+ minute time
REPORTTIME=60
# Time format
export TIMEFMT=$'%E (user: %U, kernel: %S)'
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f045bb45f006d60b4cfb6ba9b83379d75cbfc370 | 1,067 | #!/bin/bash
dbname="login"
dbidentifier="itmo-chandu"
dbsgrp="sg-8f6fa4f6"
dbinstance="db.t2.micro"
dbengine="mysql"
muser="controller"
mpassword="iloveuchandu"
storage="5"
dbzone="us-west-2b"
#creating the rds instance
aws rds create-db-instance --db-name $dbname --db-instance-identifier $dbidentifier --vpc-securit... | [
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0af7284aefd6d9d9311a6d4ae91fc5066104e11f | 95 | #!/bin/bash
echo "You are using $(basename $0)"
for n in $*
do
echo "Hello $n"
done
exit 0
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50fe234c9f938dfa19d2820ac4a9107f583053b5 | 998 | FILTER_QUERY=""
PERMISSIONS_QUERY=""
PERMISSION="{\"P1.FromPort\":FromPort||'',\"P2.ToPort\":ToPort||'',\"P3.IpProtocol\":IpProtocol||'',\"P4.Ipv4Ranges\":IpRanges[].CidrIp, \"P5.Ipv6Ranges\":Ipv6Ranges[].CidrIp,\"P6.UserIdGroupPairs\":UserIdGroupPairs}"
while getopts "p" opt;
do
case "$opt" in
p) PERMISSIO... | [
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79dfa2160d74590d1abe58af87bcf1034668d4b3 | 251 | NODE_ENV = development
#Devops constants
HOST = 'localhost'
API_PORT = 3000
#jwt token details
TOKEN_ISSUER = 'ambika.amruta.pani'
TOKEN_AUDIENCE = 'ambika.amruta.pani'
TOKEN_SECRET = "%'njEJ|7Mett[|/YLsfRTb_QAqe.J("
# 60 days
TOKEN_EXPIRY = 5184000 | [
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218917ce5d2f9e07e28242aec7b9234987dde895 | 2,240 | #!/bin/bash -eu
# Helper function to reliably create a new namespace
function newns {
nsname=$1
ip netns del $nsname &> /dev/null || true
ip netns add $nsname
ip netns exec $nsname ip link set lo up
}
# Create a new link between namespaces
function newlink {
wanname=${1:-}
lanname=${2:-}
subnet=${3:-192.168.1... | [
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0c3a6ea7b500f05cfa5a858b0b206257eac40e6f | 123 | #!/bin/bash -xe
aws cloudformation deploy --template-file upload.template --stack-name ex4 --capabilities CAPABILITY_IAM
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269ba945fdd2da7c292e00549209a02536ae3dea | 789 | #!/bin/bash
: ${PYTHON_COMMAND_FILE:?"Please set the PYTHON_COMMAND_FILE variable!"}
: ${PYTHON_COMMAND_FILE_FOLDER:?"Please set the PYTHON_COMMAND_FILE_FOLDER variable!"}
: ${PYTHON_COMMAND_FILE_PARAMS:?"Please set the PYTHON_COMMAND_FILE_PARAMS variable!"}
: ${PYTHON_COMMAND_PID_FILENAME:?"Please set the PYTHON_COMM... | [
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3ac04498fbd281facb58bd3c9e8740c76593705f | 126 | #!/bin/bash
set -euo pipefail
DATE=$(date +"%Y-%m-%d_%H%M%S")
raspistill -o "/root/photos/image_$DATE.jpg" -hf -vf -n -t 30
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4,
4... |
356ff0e83c32ed6a53927dc048eb3092b2679e2f | 755 | #!/usr/bin/env bash
outfile="lab1_output.text"
#question_template: "command | tee -a $outfile"
questions=(
#Q_1_a,c
{'ping -c 4','traceroute -P udp','traceroute -P icmp'}" www."{'esa.int','grnet.gr','stanford.edu','wikipedia.org','facebook.com'}" | tee -a $outfile"
#Q_1_b
"ping -c 4 -s "{'64','1400'}" www."{'esa.in... | [
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2bcec7549bb0473bf0662a17c66e9415c6095cb9 | 612 | #! /bin/bash
sdev --cores-4
ml load python/3.6.1
#import software modules
ml load biology
ml load fsl/5.0.10
ml load afni/18.2.04
ml load freesurfer/6.0.0
ml load viz
ml load graphviz
#install packages locally
# pip3 install nipype --user
# pip3 install nipy --user #no module
# pip3 install sklearn --user
# pip3 ins... | [
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68e22f34aee74ecd4f1e80d50ba2a9c7c0bdc8cc | 391 | TF_INC=$(python -c 'import tensorflow as tf; print(tf.sysconfig.get_include())')
nvcc -std=c++11 -c -o cuda_op_kernel.cu.o cuda_op_kernel.cu.cc \
-I $TF_INC -D GOOGLE_CUDA=1 -x cu -Xcompiler -fPIC --expt-relaxed-constexpr
g++ -std=c++11 -shared -o cuda_op_kernel.so cuda_op_kernel.cc \
cuda_op_kernel.cu.o -I $TF_INC -... | [
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28b550a95abd02151307eeb8ef648f943770aa0d | 125 | #!/bin/bash
data_dir="/proj/BigLearning/jinlianw/ml-10M100K"
data=${data_dir}/ratings.csv
./ooc_sgd_mf.py ${data} 100 1 tmp
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265f56ab71be58f8bf6e71c2c375e2f46f5ea236 | 146 | tar xfz complete.csv.tar.gz
# run scale code to generate the json file in current directory
scala -cp scala-csv_2.12-1.3.5.jar csv_to_json.scala
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4273b28cdb070d01bf243399d0d3ac0b6513c712 | 2,958 | #!/bin/zsh -l
###----------------------------------------------------------------------------#
### Copy, read and write for new gauss-bump topography
###----------------------------------------------------------------------------#
#scp -r /Users/Schmulius/Desktop/UniMaster/Thesis/Clemens_Grid_Bump/BED_Bump400.xyz Cl... | [
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941293a0eb2ee8cd6d2cf130c61f98ef64a654e3 | 25 | #!/bin/sh
expr 12 + 13
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c93e122d3cdec4a012d0c65735d908f6f11487f5 | 306 | SECRET_KEY='22+sg%5+##a=^-$o58(1q9(^r@cjl-p0r3m^x9@-#i=1qcs2y2'
DEBUG=1
DJANGO_ALLOWED_HOSTS=localhost 127.0.0.1 [::1]
SITE_ID=1
SQL_ENGINE=django.db.backends.postgresql
SQL_DATABASE=network
SQL_USER=network
SQL_PASSWORD=network
SQL_HOST=db
SQL_PORT=5432
DATABASE=postgres
REDIS_URL=redis://redis:6379/0
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a23cb09eda39adb362b16127599b32111799e84a | 556 | #!/bin/bash
if [ "$#" != "2" ]
then
echo "Invalid Argument Count!"
exit
fi
FILE="$1"
EXTRACTED_DIR="data/extracted"
if [ ! -d $EXTRACTED_DIR ]
then
mkdir $EXTRACTED_DIR
fi
SOURCE_DIR="$EXTRACTED_DIR/$2"
# Remove existing files, if applicable
if [ -d $SOURCE_DIR ]
then
rm -r $SOURCE_DIR
fi
mkdir $SOURCE_DIR
e... | [
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2c45f5e722772d7ad217118e5f8abc71a31c076a | 165 | #title Circular allocator for dispatcher (producer/consumer allocator)
g++ -std=c++11 -O2 -Wall -pedantic -pthread -lboost_system -lboost_thread main.cpp && ./a.out | [
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3f89d565633a79205769192697badd14c9b74b1e | 505 | #!/bin/bash -x
arr=()
for i in `seq 0 9`
do
randomNo=$((100+$RANDOM%999))
arr[i]=$randomNo
done
first=${arr[0]}
min=$first
minTwo=$first
max=$first
maxTwo=$first
for j in ${arr[@]}
do
if [ $j -lt $min ]
then
minTwo=$min
min=$j
elif [ $j -lt $minTwo -a $j -ne $min ]
then
minTwo=$j
fi
if [ $j -gt $max ]
... | [
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379aebcf940e1a862ac30579b465e8e50b71ae2e | 369 | #!/bin/sh
ipset -! -N music hash:ip
uclient-fetch -q -T 10 http://httpdns.n.netease.com/httpdns/v2/d?domain=music.163.com,interface.music.163.com,interface3.music.163.com,apm.music.163.com,apm3.music.163.com,clientlog.music.163.com,clientlog3.music.163.com -O- | grep -Eo '[0-9]+?\.[0-9]+?\.[0-9]+?\.[0-9]+?' | sort | u... | [
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34e924e34f8cd2d51ce470bc9c87faf9a81cb1d1 | 828 | #!/bin/bash
set -euo pipefail
mkdir /data/lnd
echo "$TLS_CERT" > /data/lnd/tls.cert
echo "Reference:"
echo "https://api.lightning.community/#lnd-rest-api-reference"
echo ""
echo "Example - Check channels:"
echo 'curl -w "\n" -sSL -X GET --cacert /data/lnd/tls.cert -H "Grpc-Metadata-macaroon: $READ_MAC" https://$LND_... | [
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512f6818809a357d3e418de83dc800a07245f59c | 128 | #!/bin/bash
# Run wfa_ca at the DUT PC
export WFA_ENV_AGENT_IPADDR=127.0.0.1
export WFA_ENV_AGENT_PORT=8000
./wfa_ca eth0 9000
| [
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83db2b5a8a40d45a7943259fbba42f4243c5f381 | 62 | go build
go install
go test -cpu=4 -bench=. gopl.io/ch02/ex25
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20006ff77dc19a7e24a53cbeaa805280c5ae794e | 557 | echo -e "\n--- Installing NodeJS & NPM ---\n"
curl -o- https://raw.githubusercontent.com/creationix/nvm/v0.32.0/install.sh | bash > /dev/null 2>&1
export NVM_DIR="$HOME/.nvm"
[ -s "$NVM_DIR/nvm.sh" ] && . "$NVM_DIR/nvm.sh" # This loads nvm
source ~/.bashrc > /dev/null 2>&1
nvm install node
nvm alias default node
nvm... | [
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05fde4d1e6c5bed4d9777b8b495db684676871ce | 3,945 | #!/bin/bash
# Script that sets up and submits a branch run from a CAM5 slab ocean aquaplanet control
# run following the TRACMIP protocol (Voigt et al. 2016 JAMES) on FRAM cluster. The som forcing
# file is modified from the control. The model version is CESM 2.1.0.
# define inputs
expname="QSC5.TRACMIP.NH01.Lk1.Q0.... | [
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4b52bc383a6575c5d6cf8b3f1bbd571915f2fbab | 128 | version https://git-lfs.github.com/spec/v1
oid sha256:07d1ea15f67aa1d9b24be8c5ac8fd01b24f9ea0daec6b9c5119853bcf78ee49c
size 865
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4d5c2f5d7201ddbf08433abe392dcb02ed98b9b7 | 575 | #!/bin/bash
echo Geef username:
read name;
if [ -z "$name" ]
then
name=$(whoami)
fi
echo Welkom $name!
index=0
while [ "$index" -eq 0 ]
do
echo Geef wachtwoord "(min 8 characters):"
read password
if [ "${#password}" -gt 7 ]
then
echo Confirm password:
read newPassword
if [ "$newPassword" = "$password" ]
... | [
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5f150f1fad60c7c72567328afa2ce5daed0056e6 | 61 | #!/bin/bash
git add .
git commit -m $1
git push origin dev
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3b497b366f3cbf1e95006809bd32a82f55f9ac4b | 69 | #!/bin/bash
( cd webapp ; ng build --prod )
gcloud app deploy webapp | [
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e189dd151adff10e8ae103f7b5ea7a5aa3ff5007 | 492 | #!/bin/sh
#
# Build the Wordpress image.
#
set -e
# Avoid memory limits with large database imports.
echo 'memory_limit = 512M' >> /usr/local/etc/php/php.ini
# Avoid memory limits with large database imports.
echo 'upload_max_filesize = 25M' >> /usr/local/etc/php/php.ini
echo 'post_max_size = 25M' >> /usr/local/etc/p... | [
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fc8c1118da56a01bbb7b30598fa81ad4c12377e5 | 232 | #! /bin/sh
# .using xrandr set HDMI properly -> under/overscan
#sh ~/initxrandr.sh
# turn laptop monitor off
#xrandr --output LVDS --off --output HDMI-0 --auto
#set keyboard slow
xset r rate 1000 5
setxkbmap -option caps:none
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be03fc1af7ee969fbdc366f557f8736d97a85554 | 450 | #!/bin/bash
#current directory
dir="$(pwd)"
#parent directory
parentdir="$(dirname "$dir")"
#make flags
makeArgs=$1
#sets proper path based on if invoked from make or directly
if [ "$makeArgs" != "TRUE" ]; then
cd $parentdir
fi
# checks if golint exists or not , if not installs it
wq=$(which golint)
if [ "$... | [
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3d1879de9f6c3e94354fd7ab9b8f1aa6e7730455 | 387 | echo $1
rootdirectory="$PWD"
# ---------------------------------
dirs="external/wpa_supplicant_8 bionic frameworks/av frameworks/native system/core system/netd packages/apps/Settings"
for dir in $dirs ; do
cd $rootdirectory
echo "Reverting $dir patches..."
repo sync $dir
echo " "
done
# -------------------------... | [
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97eeed2dbab4c1c50810d3c479ceb5a741afbe8f | 345 | wget https://dl.google.com/go/go1.12.6.linux-amd64.tar.gz
tar -xvf go1.12.6.linux-amd64.tar.gz
mv go /usr/local
rm go1.12.6.linux-amd64.tar.gz
echo 'export GOROOT="/usr/local/go"' >> /home/vagrant/.bashrc
echo 'export GOPATH="$HOME/project/"' >> /home/vagrant/.bashrc
echo 'export PATH="$GOPATH/bin:$GOROOT/bin:$PATH"' ... | [
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442c1e63fa672ded46e6933fe21d25b1f11e7b97 | 283 | DOTDIR="$(dirname $(readlink $HOME/.zshenv))"
export ZDOTDIR="$DOTDIR/zsh"
export TMUXDIR="$DOTDIR/tmux"
export BLOCKSIZE=K
export PAGER=less
export VISUAL=vi
# If we really need EDITOR, just give up
export EDITOR="echo \"Sad panda... you're screwed!\"; false"
export DISPLAY=:0.0
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5b9753490cc02c0acf814ba4bc255cf6599b215e | 311 | #!/bin/bash
DIR="$( cd "$( dirname "$0" )" && pwd )"
cd $DIR
python3 get_tainan_gov.py
python3 get_weather_data.py
python3 dengue_each_day.py
python3 parse_dengue_data.py 2015/10/21
python3 parse_drug_data.py
python3 get_tainan_gov_v2.py
python3 dengue_each_day_v2.py
python3 parse_dengue_data_v2.py 2015/10/21
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bfdaa6e90cef1d5a0a79e96e57cb458ce6ee86be | 393 | #!/bin/bash
#
# Menu for transmission daemon commands
#
main()
{
local choice="$(rofiprompt --text "Choose an option" \
--options "Start,Stop")"
if [[ "${choice}" = "Start" ]]; then
transmission --start
elif [[ "${choice}" = "Stop" ]]; then
transmission --stop
fi
... | [
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0b012d28dbb79475c812c0cf7dcddb46974f4118 | 286 | echo "Starting Test Server"
echo ""
cd ../mochiweb/strategoserver/
./start-test.sh
cd ../
cd ../test/
sleep 2
echo "Running Tests"
echo ""
while true
do
python2.6 tests.py
done
echo ""
echo "Stopping Test Server"
echo ""
cd ../mochiweb/strategoserver/
./stop-test.sh
cd ../
cd ../test/
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6acca940ec108506f20c34f5860c92a1079bfbf4 | 94 | PORT=8080
API_BASE_URI=https://frost.met.no
API_CLIENT_ID=9e0e4f43-d6da-4572-8dd9-f6bad9d545c0 | [
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b679d41d588052e327a94a400a1d742e51053503 | 3,378 | #!/usr/bin/env bash
. lib.bash || exit
. libks.bash || exit
# create file list from directory
list_create() {
local dir="$1"
find "$dir" -printf '%Y %m ./%P\n'
}
# remove files according to list
list_remove() {
local list="$1"
local ftype mode path
tac "$list" | while read -r ftype mode path; do
path="$PREFI... | [
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f3e0da1e18c00c594fe047c95e9ee36babae23e5 | 147 | #!/bin/bash
if test ! -e a_test_file; then
echo test file had not existed
touch a_test_file
else
echo test file existed
rm a_test_file
fi
| [
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d5394b4873db56d7c8dec03b41087c4e076390c8 | 324 | #!/bin/bash
#shebang
echo Hello!
read -p "Hi, enter your name " name
read -p "Enter name 1 " name2
echo "$name2" >> girls.txt
read -p "Enter name 2 " name3
echo "$name3" >> girls.txt
read -p "Enter name 3 " name4
echo "$name4" >> girls.txt
sleep 2
clear
echo "Please wait...."
sleep 2
cat girls.txt
echo "Goodbye $n... | [
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bb913fb99fe564004311460887736b04342ecfdf | 1,517 | #!/bin/bash
#
# orange-box-add-physical-nodes - add all local nodes in the micro-cluster
# Copyright (C) 2014 Canonical Ltd.
#
# Authors: Dustin Kirkland <kirkland@canonical.com>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Licens... | [
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16b399f542f707322774a1d416966a2bc100d92b | 65 | cp ../publickeys/authorized_keys ~/.ssh
sudo service ssh restart
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0e5501fdfb122047d5d1407b14739951ff1994db | 2,462 | #!/bin/bash
# 0 < numProcs < 100
SCRIPT_PATH_R="`dirname \"$0\"`" # relative
SCRIPT_PATH_A="`( cd \"$MY_PATH_R\" && pwd )`" # absolutized and normalized
PYDOCK3_BIN=`which pydock3`
if [ $PYDOCK3_BIN ];then
BASE_PATH=`dirname ${PYDOCK3_BIN}`
else
PYDOCK3_BIN=`dirname ${SCRIPT_PATH_R}`/pyDock3
BASE_PAT... | [
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55350943d83253ad44bccc612fcceffe64acf8e5 | 684 | #!/bin/sh
if [ $# == 1 ];then
echo "Changing directory : $1"
cd $1
fi
PROJECT_DIR=`pwd`
TEMPLATE_DIR=/home/yasam/projects/tools/eclipse
NAME=`basename $PROJECT_DIR`
echo "Creating project on $PROJECT_DIR"
echo "Project name : $NAME"
echo "Coping project files"
cp $TEMPLATE_DIR/.project ./
cp $TEMPLATE_D... | [
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0c65f71a025a9621cce851f857aeb76c3e657a3e | 38 | #!/bin/sh
./server | tee server.out
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22ee68faed423c3b11a4d66a80273aabc23eef7d | 240 | #!/usr/bin/env bash
remote_name=$(git remote get-url origin)
#aws secret names cant have colon
secret_name=$(echo "$remote_name" | sed 's/:/\//g')
which get_secret || { echo "Must add vera to path"; exit 1; }
get_secret -n $secret_name
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36711b981ddd2ace6eda5d95f0ec052a9efb7199 | 863 | #!/bin/bash
# Recipes for experiments.
# Note: these recipes don't report generalization statistics (i.e. accuracy
# on test data). TODO: Implement that, while still enabling saving test/train
# (maybe save 2 versions of messages: 1 -train, 1 -test)
# Maximum number of messages to save
SAVE_MAX=1000
set -e
# 500_20... | [
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3... |
ae50fea4532cb221de39384c87733d8355f0ba1c | 276 | #/bin/sh
#
#Summary- This script stops the WSMAN file log.
#
debugcontrol -d L2NFS >/dev/null 2>&1
/etc/sysapps_script/Start_L2NFS.sh stop >/dev/null 2>&1
sleep 10
umount /tmp/L2NFS
rmdir /tmp/L2NFS
rmdir /tmp/L2NFS_LOG
/etc/sysapps_script/wsman_decrypt.sh >/dev/null 2>&1
| [
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ab65ba3923c6b7a3061235238a7592915ef8e226 | 2,291 | # Maintainer: twa022 <twa022 at gmail dot com>
_pkgname=gimp
pkgname=${_pkgname}-devel
pkgver=2.99.16
pkgrel=2
pkgdesc="GNU Image Manipulation Program (Development version)"
arch=('i686' 'x86_64' 'armv7h' 'aarch64')
url="https://www.gimp.org/"
license=('GPL' 'LGPL')
depends=('gtk3' 'lcms2' 'libwmf' 'icu' 'enchant' 'li... | [
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e7064484340496c990e166ca1700853fdfff417f | 1,872 | #!/bin/sh
#=======================================================================
# init.sh
# This script prepares for new LETKF cycle-run experiment
#=======================================================================
set -e
#-----------------------------------------------------------------------
# Modify below... | [
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04b7a74fc2fb7f509e902f3c228f4836b42fa383 | 290 | #!/bin/sh
source "../../common/init.sh"
get https://github.com/balabit/syslog-ng/releases/download/${P}/${P}.tar.gz
acheck
cd "${T}"
importpkg json-c openssl dev-libs/hiredis
doconf --sysconfdir=/etc/syslog-ng --disable-java --disable-python
make
make install DESTDIR="${D}"
finalize
| [
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7e4a96d00aa5af25b73666f6db13dc6b4c8754f6 | 340 | #!/bin/bash
sed -i "s/external_url '.*'/external_url 'http:\/\/$(/usr/local/bin/oc-metadata --cached ID).pub.cloud.scaleway.com'/g" /etc/gitlab/gitlab.rb
gitlab-ctl reconfigure &> /dev/null
gitlab-ctl reconfigure &> /dev/null
mkdir -p /var/opt/gitlab/backups
chown git /var/opt/gitlab/backups
sed -i s/gitlab-reconfigure... | [
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75e9530d9ef92214db5f3f7c819cef33e88124f6 | 93 | clear
toilet -f smblock "Run Times (1 Mile):" | lolcat
termgraph mileTimes.dat --color green
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ce0791a09f9f4294cdaf197a20620f73900b223e | 718 | #!/bin/bash
clear
# wait until the worker 1 is ready
sleep 30s
# start the client and send first transaction
cd /substraTEE/substraTEE-worker-M4/bin
./substratee_client -p 9977 -s 192.168.10.10 2>&1 | tee /substraTEE/output/client_first.log
# wait until worker 2 registered
sleep 30s
# start the client and send sec... | [
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e3fc7cca145db2ee6713e9031fc0ce8ab1c10e41 | 495 | #!/bin/bash
echo 'PWD:' `pwd`
device_number="0"
mcnnsantispoofing.py --dataset 3 --dataset_path dataset/LivDet-Iris-2017-Clarkson-Data-Full --iris_location extra/clarkson_osiris_coords.csv --output_path tests/working_nov22 --descriptor RawImage --operation segment --max_axis 260 --bs 32 --epochs 70 --lr 0.001 --dec... | [
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3ffd21d5224b8260c715c15674be922585513299 | 191 | #!/usr/bin/env sh
export SNIP_PATH=$(dirname `readlink -f $0`)
export NODE_ENV=development
export NODE_PATH=$NODE_PATH:$SNIP_PATH:$SNIP_PATH/dependences/node-imagemagick
forever start "$@"
| [
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32c00d09aa5b46983212def502a237881a8d5a96 | 1,244 | #!/bin/bash
set -e
# make sure we're in the directory where the script lives
SCRIPT_DIR="$(cd "$(dirname ${BASH_SOURCE[0]})" && pwd)"
cd $SCRIPT_DIR
# set up the $GOPATH appropriately
. ./set_gopath.sh
mkdir -p bin
export GOBIN=bin
GOXC="`pwd`/vendor/src/github.com/laher/goxc/goxc.go"
NONTASKS="go-vet,go-test,archiv... | [
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1... |
f7e9813f5591b2af2d65a24d8569b4e07decb91c | 2,778 | #!/bin/bash
GATK_RESOURCES=gs://hellbender-validation/resources/gatk-bundle
FILE=CEUTrio.HiSeq.WGS.b37.ch20.4m-6m.NA12878.bam
GCS_INPUT_PATH=gs://hellbender-validation/test-input/NA12878
GCS_OUTPUT_PATH=gs://hellbender-validation/pickard-gatk3-output/NA12878
cd /tmp/
gsutil cp ${GCS_INPUT_PATH}/${FILE}* ./
gsutil ... | [
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6de512e59d96cc9e6188ee6769fab6a5f0e4636a | 1,196 | #!/bin/sh
#
#
# http://dl.google.com/android/android-sdk_r22.0.5-linux.tgz
#
ROT_PATH=`pwd`
BIN_PATH=~/workshop/bin/android-sdk
IMG_PATH=${ROT_PATH}/out
TOOLS_PATH=`find ${BIN_PATH}/ -name \tools -type d -not -path *com* -not -path *docs*`
EMULATOR=`find ${BIN_PATH}/ -name \emulator -executable -type f -path *bin*`
... | [
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ffb1c7fecd471042ed5a9b396f4faee7a31ed1a1 | 1,374 | #!/bin/sh
# --- Copyright University of Sussex 2008. All rights reserved. ----------
# File: C.unix/src/mksyscomp
# Purpose: Build saved images for POPC, POPLINK and POPLIBR
# Author: John Gibson, Jun 24 1988 (see revisions)
# Usage:
# mksyscomp [-d] [image ...]
# where 'image' is popc,... | [
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552be3ea46bdf07d7724091f1e1a8df213dacf46 | 467 | #!/bin/bash
mkdir data/no_outlier_eval/multi_bias_$1
mkdir data/no_outlier_eval/multi_bias_$1/images
scp alex@rll5:~/rll/reinforcement-lfd/feature-dist/jobs/eval/multi_bias_500_result_no_outlier.h5 data/no_outlier_eval/multi_bias_$1/result.h5
./holdout_result.py data/no_outlier_eval/multi_bias_$1/result.h5 data/no_outl... | [
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50c046568b77ac99efab4bc44c1cc0af28c28397 | 1,232 | #!/bin/bash
set -o errexit
set -o nounset
set -o xtrace
script_dir="$( dirname "${0}" )"
source "${script_dir}/../config/targets.sh"
source "${script_dir}/../config/release.sh"
source "${script_dir}/../config/functions.sh"
for target in ${targets}
do
sub_target_list="subtarget_${target}"
for sub_target in ${!sub_t... | [
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880b98039205c9a06a35d675d7af70491ce36460 | 514 | #for mac x86
url=https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh
#for mac m1
#url=https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-arm64.sh
#for linux
#url=https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
#for win
#url=https://repo.anaconda.com/miniconda/Minico... | [
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7608abe53ed5f1bcda63d77ec246387af05d9be4 | 730 | export GOPATH=/home/ubuntu/gopkg
export GOROOT=/usr/local/go
APPROOT="$GOPATH/src/github.com/kobeld/editorpro/"
echo "======= updating pandoc code ========"
cd $GOPATH/src/github.com/kobeld/gopandoc
git checkout master && git pull origin master
if [[ $? != 0 ]] ; then exit 1; fi
echo "======= updating editorpro code ... | [
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06378e3600233d51e8e2ed0eca6c96f1aeb566e5 | 646 | #!/bin/sh -ex
if [ $# -lt 3 ]
then
echo "Usage: $0 <image name> <mount point> <.efi file> [another file]"
exit 1
fi
DEVENV_DIR=$(dirname "$0")
DISK_IMG=$1
MOUNT_POINT=$2
EFI_FILE=$3
ANOTHER_FILE=$4
if [ ! -f $EFI_FILE ]
then
echo "No such file: $EFI_FILE"
exit 1
fi
rm -f $DISK_IMG
qemu-img create -f... | [
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68355246c4b81cc2d75937f94177cc98a6f2a7cf | 3,832 | #$ -S /bin/sh
#$ -pe serial 3
#$ -l h_vmem=6G
module load STAR/x86_64/2.5.2b
#Mapping the GSE54153 dataset reads (due to some samples undergone 'quality trimming' the code is messy, as the correct
#files need to be collected).
for i in {886..903}
do
gunzip /group/biocomp/users/cadav/Thesis/Transcriptome/RNA-Seq/GSE... | [
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2,
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3... |
704d9cdaac2c536a37298c9953468747e4791865 | 3,686 | #!/bin/bash
# Default acpi script that takes an entry for all actions
case "$1" in
cd/play)
case "$2" in
CDPLAY)
logger 'PlayPauseButton pressed'
# /usr/bin/sudo -u carlb playerctl play-pause
#/usr/bin/amixer set Speaker on
#/usr/b... | [
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9... |
40b70de422a201b98e69643c5497155a5edee67e | 715 | #!/bin/bash
EXPNAME="ENSrcjs"
UF="20"
for seed in 1 #{1..30}
do
for nsize in 4
do
for npc in 2
do
for bc in 8
do
for tw in 50
do
for pi in RCJS_1_3_50_40.txt
do
for nr in 1
do
for ntg in 1
do
for sip in 5
do
for mt in 36000
do
for ps in 2000
do
FILE=EXP${EXPNAME}NS${nsize}NPC${npc}BC${bc}TW${tw}PI${pi}NR${nr}NTG${ntg}S... | [
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6... |
75214a208455af1c8e8a534619c3c89b34a7a00d | 956 | #!/bin/bash
#shellcheck disable=SC1091
set -a -e -x
[[ $(command -v http) ]] || {
echo "http and jq are required"
exit 1
}
THIS_FILE=$(readlink -f "${BASH_SOURCE[0]}")
THIS_DIR=$(dirname "${THIS_FILE}")
source "${THIS_DIR}/../env.sh"
docker-compose -f "${THIS_DIR}/docker-compose.yml" up -d
sleep 10s
http -... | [
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f3c6e852925d6dab5aefa744df918d3434087f0d | 1,277 | #!/usr/bin/env bash
# unofficial "bash strict mode"
# http://redsymbol.net/articles/unofficial-bash-strict-mode/
# Commented out 'u' because the `activate` script has some unassignment issues
set -u
set -eo pipefail
IFS=$'\n\t'
build_type="opt"
DIR=$(dirname $(realpath $0))
process_args() {
case "$#" in
0)
... | [
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4... |
d60ac05c74b6ee2aec9e52b5425964e5fb0a61f2 | 107 | BIN=./goclitem
@test "Can run the application" {
run ${BIN}
echo $output
[ $status -eq 0 ]
}
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6d9da592a7876a2a346a060e31a5a01cd414d1f3 | 617 | #!/bin/bash
getch(){
stty -icanon -echo
dd if=$(tty) bs=8 count=1 2> /dev/null
stty icanon echo
}
move(){
if [ "$1"x = "j"x -o "$1"x = "[B"x ];then
echo -en "\033[B"
elif [ "$1"x = "k"x -o "$1"x = "[A"x ];then
echo -en "\033[A"
elif [ "$1"x = "h"x -o "$1"x = "[D"x ];then
echo -en "\033[D"... | [
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4465571cb13edc17c3ef06191d4f167f0c6860ea | 1,848 | #!/bin/bash
set -e
#
# UMASK
#
umask u+rxw,g+rwx,o-rwx
#
# USER
#
RUNAS=$(whoami)
echo "DOCKER-ENTRYPOINT >> running as user: ${RUNAS}"
#
# IMPORT KUBERNETES ca.crt (OPTIONAL)
#
if [ -n "$KUBERNETES_CA_BASE64" ]
then
echo $KUBERNETES_CA_BASE64 | base64 --decode > /tmp/kube-ca.crt
echo "DOCKER-ENTRYPOINT >> KUBE... | [
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5dcb05457a84d020e10134bef944201b9b077324 | 406 | # ex. myDate = 1231_2359_2014
myDate=$(echo $(date +%m%d_%H%M_%Y))
if [ $# -ge 1 ] && [ $(echo $0 | tail -c 17) == "filename_date.sh" ]; then
cp -a $1 $(echo $1 | cut -d '.' -f 1)_$myDate.$(echo $1 | cut -d '.' -f 2)
echo $(echo $1 | cut -d '.' -f 1)_$myDate.$(echo $1 | cut -d '.' -f 2)
fi
# (cut can be replaced ... | [
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bd228cb43f9631f8f34b65210d4c46331565d3b6 | 347 | #! /bin/bash -e
# directory this script is located in
SCRIPTS=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
# some convenient aliases
COMMONER="$SCRIPTS/commoner"
ROOT="$SCRIPTS/.."
BUILD="$ROOT/build"
# for now build everything into the build directory
/usr/bin/env node "$COMMONER" --relativize --use-provides-m... | [
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add41695d2410a1be73650fdb51847c708465933 | 327 | #! /bin/sh
RETRY_COUNT="0"
RETRY_MAX="$1"
shift 1
CMD="$@"
RES="999"
while [ "$RETRY_COUNT" -lt "$RETRY_MAX" ]; do
$CMD
RES="$?"
RETRY_COUNT=`expr $RETRY_COUNT + 1`
if [ "$RES" -eq 0 ]; then
grep -r '<error' */target/test-reports/
grep -r '<failure' */target/test-reports/
exit 0
fi
done
exi... | [
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9130cb892a1b7239224e5fb752ec4f1295712d29 | 480 | #!/usr/bin/env bash
sudo yum install -y epel-release
yum provides '*/applydeltarpm'
yum -y install deltarpm
wget --directory-prefix="/home/vagrant/dev/tools/" https://packages.chef.io/stable/el/7/chef-12.8.1-1.el7.x86_64.rpm
wget --directory-prefix="/home/vagrant/dev/tools/" https://packages.chef.io/stable/el/7/che... | [
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85e1b9eaaecce92e5d3d8064bafedc2759f58b22 | 72 | #!/bin/bash
docker build -t felipederodrigues/redmine_cluster:latest .
| [
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7da580b00323510a76e57177452f5f3c816909ee | 491 | #!/bin/sh
DEVOPS="$HOME/.devops"
if [ ! -z "$HOST_COLOR" ]; then
echo "$HOST_COLOR" > "$HOME/.host_color"
fi
curl -fLo ~/.vim/autoload/plug.vim --create-dirs \
https://raw.githubusercontent.com/junegunn/vim-plug/master/plug.vim
mkdir -p "$HOME/.vim/backup"
if [ ! -d "$DEVOPS" ]; then
git clone https://... | [
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283463853e452fe893edccb7f4d3ba5de9d88d5a | 456 | #!/usr/bin/env bash
cloc --out=cloc.driver.txt --exclude-lang=make driver r2.sh
cloc --out=cloc.master.txt --exclude-dir=bin master/src
cloc --out=cloc.analysis.txt master/src/bin uberenv.sh work/*.{sh,plt}
cloc --sum-reports --out=uberfuzz cloc.{master,driver}.txt
cloc --sum-reports --out=uberfuzz.all cloc.*.txt
for... | [
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38f812d3171675d997d93b17153e2c5080c33e06 | 63 | #!/bin/sh
/usr/bin/java -jar /usr/share/java/yed/yed.jar "$@"
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178c8dc2a6120e6fa5529389b7c0ea27a2319765 | 898 | #!/bin/bash -x
isPartTime=1;
isFullTime=2;
maxHrsInMonth=100;
totalSalary=0;
empRatePerHr=20;
numWorkingDays=20;
totalEmpHrs=0;
totalWorkingDays=0;
function getWorkingHours(){
case $1 in
$isFullTime)
workingHours=8
;;
$isPartTime)
workingHours=4
;;
*)
w... | [
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8509aceff324c89dde75d47e253326b4f16e47fe | 3,784 | #!/usr/bin/env bash
#
# Shell Response Text/Colors/Helpers
#
# This file contains text/color effects and
# text-response helper functions for Shell scripts.
#
# shellcheck disable=SC1090,SC1091
# Color Switch
export SWITCH='\033['
# Clear whole line and hard-line-return
export ClearLine="${SWITCH}2K"
export ClearLine... | [
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ae2946774fb538da96ac9a8ec0ff0a440bded6e4 | 1,533 | #!/bin/bash
# SCRIPT: digclock.sh
# USAGE: ./digiclock &
# PURPOSE: Displays time and date in the top right corner of the
# screen using tput command.
# To stop this digclock use command "kill pid"
################################################################
####################### VARIABLE DECLARATION ###########... | [
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52f01b824dafa81620832ce44a900a7fc9b5bf72 | 1,580 | #!/bin/sh
# run in docker
#if [ ! -d "boost" ]; then
# cp /usr/include/boost boost -R
#fi
if [ ! -d "LuaJIT" ]; then
if [ ! -f "LuaJIT-2.0.5.tar.gz" ]; then
curl http://luajit.org/download/LuaJIT-2.0.5.tar.gz -o LuaJIT-2.0.5.tar.gz
fi
tar -xzvf LuaJIT-2.0.5.tar.gz
mv LuaJIT-2.0.5 LuaJIT
fi
if [ ! -d "LuaBrid... | [
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c06b398f861ac3b76de22ca9aea6f3d8dd30edb8 | 1,215 | #!/bin/bash
# 149 max
for i in `seq 1 149`; do
wget \
--post-data="searchType=Suburb&noRefine=&lawyerName=&distanceCalc=&searchWithin=10&list_state=NSW&list_state2=&lawyer_id=&txtSuburb=2000&search=true&pageNum=$i&searchType=Suburb&type=&typeRefine=&level=&lawarea=&lawareaRefine=&flashfile=&feature=&list_region... | [
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84e6f0f9b54afb65749fd238bc722a37172994f8 | 755 | #!/bin/sh
# https://git-scm.com/docs/githooks
PRE="`date` post-commit-msg:"
LOG=~/githook.log
echo === $PRE $0 entered ========================= >> $LOG
echo $PRE LOGNAME: $LOGNAME USER: $USER HOME: $HOME >> $LOG
echo $PRE PWD: $PWD >> $LOG
echo $PRE EDITOR: $EDITOR >> $LOG
echo $PRE PATH: $PATH >> $LOG
echo $PRE GIT_D... | [
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b811e44aabfc5e13a873dcd58b7a5cdb102f7d31 | 137 | alias egrep='egrep --color=auto'
alias fgrep='fgrep --color=auto'
alias grep='grep -n --color=auto'
alias ll="ls -lah"
export CLICOLOR=1
| [
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1166280275abe119cd66737db2f0b577a8b19758 | 225 | #!/bin/bash
for ((x=1;x<379;x++))
do
convert -resize 500% ~/Documents/ac94/images/page$x.png -type Grayscale ~/Documents/ac94/images/page$x.tiff
tesseract ~/Documents/ac94/images/page$x.tiff ~/Documents/ac94/text$x
done
| [
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647e0ca4395bd5dd3c64b265dd9449d07e91c805 | 48 | PUBLIC_VALUE=i am public
SERVER_ONLY=big secret
| [
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54c25fc9e4f8282e30a142eeed15452c08cfae2c | 536 | #!/bin/bash
quarks=../../..
# Runs IBM Watson IoT Plaform sample.
#
# runiotfsensors.sh path/device.cfg
#
# e.g. runiotfsensors.sh $HOME/device.cfg
#
# This connectors to your IBM Watson IoT Platform service
# as the device defined in the device.cfg.
# The format of device.cfg is the standard one for
# IBM Watson IoT... | [
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a6a144aa007670a2533838915efa802e4a3c59c8 | 65 | #!/bin/bash
service kea-dhcp4-server start
service bind9 restart | [
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de075e27958a79a4a1b5e7779eb162a68f224496 | 132 | DB_CONNECT = "mongodb+srv://madrigal1:gokz@acmwebintro-oi8yk.mongodb.net/test?retryWrites=true&w=majority"
TOKEN_SECRECT = "dfssfdg" | [
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a159ae05f75f9da0503c2db2d5d18b7ac0a301f2 | 3,433 | #!/bin/sh
#================================================================================
# (C)2013 dMajo
# Title : ad-blocker.sh
# Version : V1.02.0018
# Author : dMajo (http://forum.synology.com/enu/memberlist.php?mode=viewprofile&u=69661)
# Description : Script to block add-banner servers, dns based... | [
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2d9a9178637e0f98451236a755136c35d2cc542c | 12,649 | #!/usr/bin/bash
if [ ! -d /data/zaworaca/data/CZ/150603_1723_utah ]; then
mkdir -p -m 777 /data/zaworaca/data/CZ/150603_1723_utah
fi
if [ ! -d /data/zaworaca/data/CZ/150603_1823_utah ]; then
mkdir -p -m 777 /data/zaworaca/data/CZ/150603_1823_utah
fi
if [ ! -d /data/zaworaca/data/CZ/150603_1924_utah ]; then
mkdir -p -m... | [
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f7dda43e409a8e536036fd8beb6a6aa2f7c4c0bf | 2,357 | #!/bin/bash
function die () {
echo 2>&1 "${1}"
exit 1
}
if [ $(whoami) != "root" ] ; then
sudo $0 $@ || die "Not run as root or cannot sudo to root"
exit $?
fi
apt-get install -y memcached redis-server postgresql daemon unzip npm
# Create dev/test databases and users, set passwords
for user in $(whoami) clo... | [
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7,
8,
5,
5,
6,
7,
6,
6,
7,
6,
6,
7,
7,
8,
8,
9,
8,
7,
4,
4,
5,
6,
7,
5,
5,
6,
4,
4,
2,
2,
3,
3,
3,
4,
4,
4,
5,
6,
6,
7,
8,
9... |
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