- updated for ezseg (5c14bbef79e7c8d952caba883e1aad12a3a4f863)
- removed cursed mac hidden files, god forbid (4c3dc9c2ee470848257ace29d07cd7ef9be4d48a)
Fix `plaque.tiff` name in `fov1` of `ez_seg_data/composites` (#16)
- Initial commit of new ezSegmenter data (89a9f7388472f73b58ea905e26df53db5bab12bb)
- Add ezSegmenter example data for testing (1359d2bd16d134f4b995595cf2918cc1f063bee4)
- Remove extraneous cell tables (95a83a846454bf9addbcf33dc9890f759223f28c)
- Remove .DS_Store files (414c03761e8197006dbe8a8d5a82f103d2ec5961)
- Remove .mantisDb file (8056e8628f7e05c3e2e02b5e02befaf0b15efd34)
- Update the internal mantis visualization file structure (ff37b4f43c48714b8c2511353b9a927cc34075ff)
- Remove .DS_Store files (7e13d41813dbb541bff4ae6f8b384a4f20f4ca70)
- Remove mantis visualization dir, this should get created by the notebook (f4da801f95e89b2b7975320cf860f397ff689692)
- Remove .DS_Store (343ceeaf2bf9b73191f9c88c3f43bf484c6aa108)
Properly account for pre and post rownorm in Pixie file names (#13)
- Ensure names reflect proper row normalization states (a8ad47d0e9b67262852f6705e826bc34483efb9c)
- Update cell clustering params to include tiff_dir and img_output_dir (4e776625d85897cfec5f977e826dd913b3184c3a)
- Ensure weighted cell channel data actually contains label (660b9d3262db1fdabd10ff22c1d49c0af6009f5f)
- More updates from segmentation_label to label (c38309e19d7eaae9f67e1cf8e08a3fd2b8a6f299)
- Add example cell data inputs (bb28424336fad03b6402a018108ae6946daf0b9a)
- Remove extraneous columns from generalized_cell_table (04a8022c950951058b9dfd93f3ac112d98bd5cf2)
- Remove Unnamed: columns from generalized cell input (c179dd1d40b5b0d710e96ffde4fe2b33945ce1b7)
- Remove cell_size from the dataset (43041013a7ae4abf64c7b8b6c6a8bc798f3c7318)
- Remove prefixes from cell data (e97a768cf2a2ddf680d0aaab07c5e5cf370fdc3e)
- Change file path names and data to match updated workflow (e6af1b76320256c1727b0ccfaf1a684aa780725e)
- Revert "Change file path names and data to match updated workflow" (09a97e270dd87e39d9bd8ee9aa29f40004471811)
- Change file path names and data for pixel clustering (c3f455df3dc1ccb9a570919ef01c9f591a8e4d26)
- Change file path names and data for cell clustering (449889e96ba063e499e802b9e744d56314d6c046)
- Propagate segmentation_dir key change in cell_clustering_params in (1cab29d817d03b924edd32e6b3e2e13e61160c57)
- Merge branch 'main' of https://huggingface.co/datasets/angelolab/ark_example into pr/9 (5df078287eb84f3a3d27c05c714e752773f49c50)
- Ensure all average files subsetted with avg and not avgs (e6f8075f810208caee59c1f58b327105e46b6b78)
- Change weighted_cell_channel.csv to weighted_cell_channel.feather (51c62c6260f81e69c0e57a67c5bc80000a457c72)
Change 'segmentation_dir' to 'segmentation/deepcell_output' in cell_clustering_params.json (#7)
- Change path to segmentation_dir to segmentation/deepcell_output (ef4e4d2d29ec984f21cd9d52b1dab7e356b643bb)
- Re-add pixel output dir (6c6ddd8cb633ab359dbd6fa24f54ad520d9d34c5)
- Put back pixel output dir (b31b4672923b465bad93361b65435eef04ac9310)
- Revert "Change path to segmentation_dir to segmentation/deepcell_output" (16f90d4fbae37a220059897eeedf4276de7890ca)
- Hard reset (dfb84fd985b0d52ae87e3ed531f5b6e247b9ff1c)
- added dataconfigs for Fiber Seg, LDA Preprocessing + Training / Inference (9ed93a8dfef9d45e5fb55d45b0c26687b5b189d0)
- add configs to _info (5b0b1187d2703bad6e4a2e73bba41a9efe10ded5)
- remove type hints (2b603f506bf3780cdea2cc6ffcc5d53bc0d5f759)
- added other spatial configs (56f4643c924c481f58689df612887f753bad93fb)
- added post-clustering files (3d4387e8acbcc0863bee5231be80527bf10992d8)
- put in folder (8f872c6b8caf28ca04fb220bac672e3eddd27ae3)
- put in folder (27560f4f4131d66aa0cb1beeb680ab47f9a6cbfa)
