Dec 12, 2022 22:02 Hard reset 21:58 Revert "Change path to segmentation_dir to segmentation/deepcell_output" This reverts commit ef4e4d2d29ec984f21cd9d52b1dab7e356b643bb. 21:25 Put back pixel output dir Dec 9, 2022 22:05 Re-add pixel output dir 19:02 Change path to segmentation_dir to segmentation/deepcell_output Nov 18, 2022 01:19 Segmentation Dataset - Fix Marker Thresholds File (#6 ) - fixed marker thresholds files (4e8243f3c079e09a5ac4c72fc294d17b0e94830f) Nov 16, 2022 23:29 Spatial Analysis Datasets (#5 ) - added dataconfigs for Fiber Seg, LDA Preprocessing + Training / Inference (9ed93a8dfef9d45e5fb55d45b0c26687b5b189d0)
- add configs to _info (5b0b1187d2703bad6e4a2e73bba41a9efe10ded5)
- remove type hints (2b603f506bf3780cdea2cc6ffcc5d53bc0d5f759)
- added other spatial configs (56f4643c924c481f58689df612887f753bad93fb)
- added post-clustering files (3d4387e8acbcc0863bee5231be80527bf10992d8)
- put in folder (8f872c6b8caf28ca04fb220bac672e3eddd27ae3)
- put in folder (27560f4f4131d66aa0cb1beeb680ab47f9a6cbfa) Nov 11, 2022 02:52 seg_suffix_change (#4 ) - Update segmentation suffixes (2e8b5d9e8d6b7c82ac3e13531b370ceb72d51e7a)
- Remove extraneous hidden files from HuggingFace (5db23d178f266fdd9bdc8db637f287eb9eb4224d) Nov 2, 2022 21:30 use_tiff_suffix (#3 ) - Change file extensions in deepcell_output to .tiff (7326f44493580e80234a017bb93cffeb3df5023b)
- Change segmentation suffix in cell_clustering_params.json (22c044ac9a62200849e0f66a83aa2dfd30a2c56e) Oct 26, 2022 17:34 example_dataset_updates (#1 ) - added datasets for nb2 (ab31001291f18268508f58b11693a6ec6e348e32)
- updated nb paths (d59b409f97cf74c19f02aaa6771cb33d0a46f934)
- small changes (9fd97a063c20e467c16c92e8087da1a4a62a93d8)
- updates to downloading, dataset updates (d0916a6c4d88b06bb2aff693ae8f4cf126bce1ed)
- removed __MACOSX (b0db6d64361348cdff2d1a590be32a8cf667358f)
- changed key name to reflect relative path (49efbc839f81ee899ac882df8e39f1248d675911)
- reverted key name change (f661869424c07e00bcfe523989132bf35ed7f84a)
- remove dict type hints (1fdc7ac3aab0f254169c0a596d0abc4a1facacd0)
- removed useless comment. (81e248c295fba5332305d1ca7764a7fc97da9cd6)
- Merge branch 'main' into pr/1 (531c2d184aa5658f076c61d5c106357aed840b6d)
- added feature_1 for deepcell_output tifs (9fecc0ccbb8f2cf1b33172b827f51dfdcf11c149)
- added datasets for nb3 (4e8f8581f72fed15fe2f5189aad9a45edc9fd765)
- added nb3 dataset Builder (7f4b0c6f875c866ea51694bce21d100e2457689d)
- URL_DATASET_CONFIGS name fix (d047ac0f69e882a339ce28f5f70fc435aaea6… Sep 22, 2022 19:39 dataset name fix in script Sricharan Reddy Varra
19:35 dataset name fix in script Sricharan Reddy Varra
19:29 dataset name change Sricharan Reddy Varra
Sep 1, 2022 00:03 fov unzip folder name fix Sricharan Reddy Varra
Aug 31, 2022 23:38 fov unzip name fix Sricharan Reddy Varra
23:22 finding fovs glob fix Sricharan Reddy Varra
22:57 download url fix Sricharan Reddy Varra
22:46 zip name change Sricharan Reddy Varra
22:16 dataset rename, tma->fov mapping Sricharan Reddy Varra
18:50 slight updates Sricharan Reddy Varra
17:56 added link review Sricharan Reddy Varra
00:08 fixed image generation Sricharan Reddy Varra
Aug 30, 2022 21:51 generator Sricharan Reddy Varra
21:49 added changes to ark_example Sricharan Reddy Varra
21:26 iterator adjustments Sricharan Reddy Varra
21:10 iterator adjustments Sricharan Reddy Varra
16:48 base dataset adjustment Sricharan Reddy Varra
16:45 base dataset adjustment Sricharan Reddy Varra
16:42 remove .vscode Sricharan Reddy Varra
16:36 generator Sricharan Reddy Varra
16:11 directory Sricharan Reddy Varra
16:07 py file change Sricharan Reddy Varra
16:04 py file change Sricharan Reddy Varra
Aug 29, 2022 23:27 fovs.zip fix Sricharan Reddy Varra
23:11 _URL_REPO fix Sricharan Reddy Varra
23:08 readme contributions update Sricharan Reddy Varra
23:07 readme yaml tags Sricharan Reddy Varra
23:02 gitignore Sricharan Reddy Varra
22:59 added fov zip file Sricharan Reddy Varra
Aug 25, 2022 23:15 initial commit Sricharan Reddy Varra
