Commit History

  1. docs(dataset): identify mNeonGreen-tagged constructs

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  2. docs(dataset): remove companion repository references

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  3. docs(dataset): align README and Croissant metadata

    Runxi Shen
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  1. docs(dataset): remove venue-specific submission claims

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  2. feat(data): replace SubCell fine-tuned features with allele RYBG-v2

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  1. feat(data): add frozen MorphEm representation to MisLocus

    Runxi Shen
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  1. fix(crops): canonicalize B7/B8 crop-tarball allele dirs (WTPMP22 merged into PMP22, ALKT1151M->ALK_Thr1151Met); refresh README + Croissant

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  2. fix(representations): canonicalize gene names in B7/B8 (WTPMP22->PMP22, ALKT1151M->ALK_Thr1151Met)

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  3. fix(manifest): canonicalize WTPMP22->PMP22 and ALKT1151M->ALK_Thr1151Met in B7/B8 manifests

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  4. chore(scope): drop representations/subcell_portable_rbg_vit/2024_12_09_Batch_12

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  5. chore(scope): drop representations/subcell_portable_rbg_vit/2024_12_09_Batch_11

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  6. chore(scope): drop representations/subcell_portable_rbg_mae/2024_12_09_Batch_12

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  7. chore(scope): drop representations/subcell_portable_rbg_mae/2024_12_09_Batch_11

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  8. chore(scope): drop representations/subcell_finetuned_vit/2024_12_09_Batch_12

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  9. chore(scope): drop representations/subcell_finetuned_vit/2024_12_09_Batch_11

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  10. chore(scope): drop representations/subcell_finetuned_mae/2024_12_09_Batch_12

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  11. chore(scope): drop representations/subcell_finetuned_mae/2024_12_09_Batch_11

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  12. chore(scope): drop representations/cytoself/2024_12_09_Batch_12

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  13. chore(scope): drop representations/cytoself/2024_12_09_Batch_11

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  14. chore(scope): drop representations/cellprofiler/2024_12_09_Batch_12

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  15. chore(scope): drop representations/cellprofiler/2024_12_09_Batch_11

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  1. Update README.md

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  2. fix(croissant): add isBasedOn (source dataset) + 4 provenance RAI fields (dataCollectionType, dataCollectionRawData, dataPreprocessingProtocol, dataAnnotationProtocol)

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  1. fix(croissant): add 4 NeurIPS-required RAI fields (dataBiases, dataUseCases, dataSocialImpact, hasSyntheticData)

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  2. fix(croissant): correct license to CC-BY-4.0 + replace HF boilerplate description

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  3. feat(croissant): v1.1.0 with FileSet distribution + SHA256 for FileObjects

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  4. docs: document metadata/allele_inventory.parquet location

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  5. refactor: remove full_allele_collection.parquet (replaced by metadata/allele_inventory.parquet, filtered to 6 release batches)

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  6. feat(metadata): add allele_inventory.parquet (1532 variants from B7/B8/B13-B16, ClinVar-annotated)

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  7. docs: add representations/ section (6 reps x 8 batches features)

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  8. chore: phase4 upload

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  9. docs: final release status (all 6 batches uploaded)

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  10. chore: phase3 upload

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  11. docs: update release status (Phase 2: B13+B14 added)

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  12. chore: phase2 upload

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  13. chore: phase1 upload

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  1. Upload full_allele_collection.parquet with huggingface_hub

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  2. initial commit

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