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def setup(*setup_functions): """Decorator that reigsters setup functions with a test. The functions passed in as setup functions take an optional 'context' parameter of type checkers.Context. Note that the decorator takes in Test instances, so this decorator should be used *above* the @checkers.test decorat...
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def get_lines(path, remove_comments=True): """Returns the lines in a C/C++ header file that are not empty. Also strips the whitespace from each line and can optionally remove the comments. Parameters ---------- path : :class:`str` The path to a C/C++ header file. remove_comme...
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def is_route(tag): """ Checks if an HTML tag is a bus route. :param tag A BeautifulSoup tag :return True if the tag has a "data-routes" attribute, False otherwise""" return tag.has_attr("data-routes")
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def _time_to_micros(time): """Convert a time into microseconds since midnight. Parameters ---------- time : datetime.time The time to convert. Returns ------- us : int The number of microseconds since midnight. Notes ----- This does not account for leap seconds or...
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def get_team_avg_height(team): """calculate a new avg_height based on current team's player's heights. If no players on team, return 0 """ num_players = len(team['players']) if num_players == 0: # No players return 0 return 0 # calculate average height of existing players tot...
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import re def uncoded(src): """Strips out any `# encoding: ???` lines found at the head of the source listing""" lines = src.split("\n") for i in range(min(len(lines), 2)): lines[i] = re.sub(r'#.*coding[=:]\s*([-\w.]+)', '#', lines[i]) return "\n".join(lines)
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from typing import Optional def validate_discharge_efficiency(discharge_efficiency: Optional[float]) -> Optional[float]: """ Validates the discharge efficiency of an object. Discharge efficiency is always optional. :param discharge_efficiency: The discharge efficiency of the object. :return: The ...
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def getCreditMultiplier(floorIndex): """ Returns the skill credit multiplier appropriate for a particular floor in a building battle. The floorIndex is 0 for the first floor, up through 4 for the top floor of a five-story building. """ # Currently, this is 1 for the first floor (floor 0), 1.5 f...
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import json def get_json(data, pretty=False, **kwargs): """ A convenience wrapper around ``json.dumps`` that respects the ordering of keys in classes like ``OrderedDict``, ``SortedDict``, and ``DefinedOrderDict``. :param data: the object to encode in JSON :param pretty: whether or not...
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def calc_force(df, close, volume, col_name="force"): """Calculate force indicator (Elder). :param df: Data frame to do and add calculations to :param close: Pandas dataframe column name close price :param volume: Pandas dataframe column name volume :param col_name: Pandas dataframe column name for ...
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def combine_prediction_metadata_batches(metadata_list): """Combines a list of dicts with the same keys and lists as values into a single dict with concatenated lists for each corresponding key Args: metadata_list (list): list of dicts with matching keys and lists for values Returns: ...
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import base64 def str_to_base64(data, encoding='utf-8'): """Codifica uma string (por padrão, UTF-8) em Base64. :param str data: String a ser codificada em Base64. :param str encoding: Opcional. O *encoding* da string `data`. Se não for especificado, o padrão é `'utf-8'`. :returns: Uma string...
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def factor_out_twos(n): """ Returns the tuple (d,s) such that n = d*(2**s) for the smallest value of d """ d = n s = 0 while d % 2 == 0: s += 1 d //= 2 return d,s
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import torch def generate_final_context_matrix(context_matrix_dict, ending_key_to_exclude="_nokg"): """Takes the average of the context matrices where their key does not end in ending_key_to_exclude. Args: context_matrix_dict: Dict of batch x M x K x H matrices of embeddings for each candidate ...
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def _columns(cursor, table): """Return the columns of a table as a list.""" cursor.execute(''' SELECT column_name FROM information_schema.columns WHERE table_schema = 'public' AND table_name = %s ''', (table, )) return [column['column_name'] for column in cursor.fetchall()]
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import json def pre_proc(batch, **kwargs): """ Pre-processing of batch. Assumes format (n_samples, n_channels, height, width). """ #opening stats file with open(kwargs["stats_fp"]) as f: stats = json.load(f) #converting keys from str to int stats = {int(k): v for k, v in stats...
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def _strip_match(matchobj): """Strip whitespace from a RE-match-object Parameters ---------- matchobj : re.Match Match-object of regular-expression. Returns ------- str Stripped string """ return matchobj.group(0).strip()
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import math def equal(a, b, abstol=1e-16, reltol=0, mathlib=math): """Check if two values are equal. By default, we test with (absolute) tolerances. This can be changed as desired. For exact equality, set abstol=reltol=0. mathlib allows to specify the module from which isclose should be used: numpy,...
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import json def get_json(res): """Return json response as a dictionary or list.""" return json.loads(res.data.decode('utf-8'))
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def _slice_ndfilter(data, filter_func, slices, args, size, footprint, kwargs): """ Helper function passing image slices to `scipy.ndimage` filters that is pickleable for threading with `multiprocessing` Parameters ---------- data, filter_func, args, size, footprint : See `multiproc...
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def isIntraChrom(read1, read2): """ Return true is the reads pair is intrachromosomal read1 : [AlignedRead] read2 : [AlignedRead] """ if read1.tid == read2.tid: return True else: return False
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def parse_tract_fips(tract_fips): """ turn a full tract fips code into a tuple of state, county, tract """ return tract_fips[:2], tract_fips[2:5], tract_fips[5:]
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def _get_indices(item, seq): """Return the indices where `item` occurs in `seq` Returns ------- Generator[int]""" return (n for n, x in enumerate(seq) if x == item)
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import json def read_json_file(path): """Returns JSON parsed data from file.""" with open(path, "r") as file: return json.load(file)
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def reaction_int2str( reaction_int, silent=True ): #;{{{ """ Translate reaction number to reaction string. The idea of this functions is to ensure that in all function within this file the same reaction is meant when referring to reaction 3 (or any other number). The integer provided to this f...
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def z_to_params(z, P, n_m, n_t): """Convert single vectors of unknowns z into separate vectors of unknowns.""" lambda_ = z[0:n_m] beta = z[n_m : 2 * n_m] betat = z[2 * n_m : 2 * n_m + n_t] T = z[2 * n_m + n_t :] return lambda_, beta, betat, T
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def _ParamExists(param_obj, param_name): """Tests whether param_name is contained in param_obj.""" if not param_obj: return for k, _ in param_obj.IterParams(): if k == param_name: return True return False
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def cleanup_frame(frame): """Make the columns have better names, and ordered in a better order.""" frame = frame.rename(columns={"Non- Hispanic white": "White"}) frame = frame.reindex(columns=["Asian", "White", "Hispanic", "Black"]) return frame
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def get_service_dependency_tree(yml_dict, run_exclude_images): """Method to generate a dict of services and services it depends on :param yml_dict: dict generated from docker-compose yml :type yml_dict: dict :param run_exclude_images: List of name of dependency services which ...
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def get_job_tasks(rank, ranks, tasks_tot): """ Return a tuple of job task indices for a particular rank. This function distribute the job tasks in tasks_tot over all the ranks. Note ---- This is a primerly a MPI help function. Parameters ---------- rank : int Current M...
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def _graph_string(graph): """Helper to serialize a graph to string.""" if graph: return graph.as_graph_def(add_shapes=True).SerializeToString() else: return b''
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def filtered_packageversion(version, revision): """ Emit "version-revision" if version and revision are not null else "version" if version is not null else "" """ return "" if (not version or version == "") else version if (not revision or revision == "") else version + "-" + revision
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def checkSameLoop(ra, rb): """ check if two anchors are exact same """ if ra[1] == rb[1] and ra[2] == rb[2] and ra[4] == rb[4] and ra[5] == rb[5]: return True return False
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def uniqueness(container): """ Checks if the container is unique. In case of uniqueness it returns True """ return len(container) == len(list(set(container)))
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def create_query_parameters(filter_expressions: list, sorting_expressions: list) -> dict: """ Create query parameters Parameters ---------- filter_expressions: List[dict] Filtering parameters [{'name': draft, 'op': gt, 'val':30}] sorting_expressions: List[dict] Sorting parameter...
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def _write_triggers_from_sequence_free_spell(array, trigger_file): """ Write triggers from free spell. Helper Function to write trigger data to provided trigger_file. It writes in the following order: (I) presented letter, (II) timestamp """ for i in array: # extract the lett...
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def string_split(input_string): """Split a string based on the presence of commas Each line of the file is read in as a single string, so it is necessary to separate this string into two categories: time and voltage. Given that the file is comma separated, this function is used to split each string ...
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def expand_id_map(id_map, all_ids): """ Ensures all ids within all_ids are included as keys in the mapping """ unmapped_ids = list(set(all_ids).difference(id_map.keys())) for i in unmapped_ids: id_map[i] = i return id_map
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def MakeRanges(codes): """Turn a list like [1,2,3,7,8,9] into a range list [[1,3], [7,9]]""" ranges = [] last = -100 for c in codes: if c == last+1: ranges[-1][1] = c else: ranges.append([c, c]) last = c return ranges
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def indexOf(a, b): """Return the first index of b in a.""" for i, j in enumerate(a): if j == b: return i else: raise ValueError('sequence.index(x): x not in sequence')
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from typing import Optional import inspect import types def get_class_that_defined_method(method: object) -> Optional[object]: """Retrieves the class that defines a method. Taken from https://stackoverflow.com/a/25959545/4293396 :param method: The method :return: The class that defines the method ...
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def aes_to_scale(var): """ Look up the scale that should be used for a given aesthetic """ if var in {'x', 'xmin', 'xmax', 'xend', 'xintercept'}: var = 'x' elif var in {'y', 'ymin', 'ymax', 'yend', 'yintercept'}: var = 'y' return var
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import queue def get_all_from_queue(q): """ Returns at least one element from the queue, tries to return as many as possible. :param q: The queue to get elements from :return: A list of elements fetched from the queue """ data = [q.get()] while True: try: data.append(q....
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from datetime import datetime def find_now(start): """ Calculate the amount of time passed from the start of the algorithm """ return str(datetime.now() - start)
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import re def _get_badchars(data: str) -> str: """Returns the badchars contained in a string.""" regex = r"[^a-zA-Z0-9\s]" match = re.findall(regex, data) match = sorted(set(match)) # unique and sort return "".join(match)
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from datetime import datetime def to_datetime(timestamp): """ Convert MediaWiki timestamp to a datetime object. Assumes the format to be in "MW" ISO with "Z" instead of +00:00 for timezone. :type timestamp: str :rtype datetime """ return datetime.strptime(timestamp, '%Y-%m-%dT%H:%M:%SZ')
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def get_datastore_id(client, name): """return the id of a datastore arguments: client -- an authenticated trove client name -- the name of the datastore to find returns: the id of the datastore or None if not found """ try: store = client.datastores.find(name=name) retu...
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def _populate_set_with_patches(new_set, unused_patches, bundle, logger): """ Adds entries to set new_set from the bundle's patch_order if they are unique. Entries that are not unique are logged as warnings. Returns True if warnings were logged; False otherwise """ warnings = False try: ...
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def wav_packing_string(num_frames, num_channels, bit_depth): """ Get the string for packing or unpacking a given number of frames using the struct module. Args: num_frames: int - The number of frames to cover in the packing string num_channels: int - The number of channels in the audio, e....
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def charcount(string, char): """counts occurrences of c at the start of s.""" i = 0 while i < len(string) and string[i] == char: i += 1 return i
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def sequence2dict(seq): """Helper function for cx_Oracle. For each element in the sequence, creates a dictionary item equal to the element and keyed by the position of the item in the list. >>> sequence2dict(("Matt", 1)) {'1': 'Matt', '2': 1} Source: http://www.gingerandjohn.com/archives/2...
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import pkg_resources def get_highest_installed(project_name): """Return highest version of installed package. @param project_name: PyPI project name @type project_name: string @return: string of highest installed version """ environment = pkg_resources.Environment() return environment[p...
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def allelic_balance(gt): """Return allelic balance from genotype value.""" if not gt.get("dp"): return 0.0 else: return gt.get("ad") / gt.get("dp")
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def get_coordinates(axis_value, ranges): """Get coordinates pairs from axis_value and other_values.""" start, end = ranges return [(axis_value, other_value) for other_value in range(start, end + 1)]
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def generate_mock_method(method): """Generate MOCK_METHOD google macro.""" return ( f"MOCK_METHOD({method.ret_type}, {method.name}, " f"({method.parameters}), ({method.qualifiers}));" )
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def _calc_overlap(geom1, geom2): """Return area overlap""" return geom1.intersection(geom2).area
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def url_from_icon_id(id: str) -> str: """Get a downloadable URL from a string ID Args: id (str): Flaticon ID Returns: str: URL pointing to the .png file for this icon """ return f"https://image.flaticon.com/icons/png/512/{id[:-3]}/{id}.png"
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from typing import Any from typing import Tuple def _normalize_slice_key(key: Any) -> Tuple: """ Normalizes slice key into always being a top-level tuple. Args: key: Slicing key that is passed within __getitem__. Returns: Expanded slice as a tuple. """ if not isinstance(key, tupl...
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import random def chunk_list(examples, chunk_size=2, pad_to_divisible=True): """ Args: examples: iterable, examples grouped by image/video chunk_size: int, number of examples in each chunk. pad_to_divisible: bool, pad the examples to be divisible by chunk_size. >>> test_examples = ...
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def snakecase_key(key): """ Convert the key to snake_case by replacing ':' with '_' and remove any leading '_' This is so the keys are valid as Python kwargs and can be used to filter the page models on on keys in the wp_post_meta which is a JSONField(). """ return ( str(key) # some...
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from pathlib import Path def testfile_checker(pytester, checker): """Return callable that compares pre existing file to testfile. This fixture is designed to run in a test case that injects the pytester fixture. pytester sets the current working directory to a temporary directory while it is active. ...
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import inspect def clsname(obj): """Get objects class name. Args: obj (:obj:`object`): The object or class to get the name of. Returns: (:obj:`str`) """ if inspect.isclass(obj) or obj.__module__ in ["builtins", "__builtin__"]: return obj.__name__ return o...
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def getAxis(node): """Parse rotation axis of a joint.""" axis = [0.0, 0.0, 0.0] axisElement = node.getElementsByTagName('axis')[0].getAttribute('xyz').split() axis[0] = float(axisElement[0]) axis[1] = float(axisElement[1]) axis[2] = float(axisElement[2]) return axis
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def preprocess_channel_types(channel_types): """ Preprocesses the given channel type values. Parameters ---------- channel_types : `None`, `iterable` of `int` Channel types to limit a slash command parameter to. Returns ------- processed_channel_types : `None` or `tuple...
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def cipher(text, shift, encrypt=True): """ Function to encipher or decipher the string by using different shift number. Parameters ---------- text : string A string that you wish to encipher or decipher. shift : integer An integer that you wish to shift. encrypt : boolea...
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def get_sorted_key_index(class_key, class_dict): """ Given class_dict, returns an index that would result from ordering the keys in class_dict according to their values and accessing one of the keys (class_key). That index can be used to access multiclass prediction scores """ assert(isinstance...
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def build_dummy_module_call(group_name, fifo_name, module_in, PE_ids): """Build the call of the dummy module Parameters ---------- group_name: str fifo_name: str module_in: int PE_ids: list """ dir_str = "out" if module_in == 0 else "in" lines = [] lines.append("\n") li...
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def fact(n): """Calculate the value of n factorial.""" # n! = n*(n-1)*...*2*1 product = 1 for i in range(1, n+1): product *= i return product
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def has_variable(obj, variable): """Tries to check if an object has a variable.""" if hasattr(obj, "has_variable"): return obj.has_variable(variable) return False
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def _check_lunch_hours(time, lunch_start, lunch_end): """Checks if the time is during lunch""" return (time < lunch_start) or (time >= lunch_end)
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import re def parse_deal_code(deal_code): """ Converts an sku and it's quantity into separate parts. eg. A -> 1, A 3A -> 3, A Args: deal_code (string) - contains sku item and an optional quantity (defaults to 1) Returns: int - quantity of item ...
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def _links(x): """Helper function to link states with one another.""" return [(x[i],x[i+1]) for i,_ in enumerate(x[:-1])]
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def get_total_figure_number(axis_matrix): """ Gets the number of figures from an axis_matrix generated by pyplot. Used by the hash to place configs in the correct part of the axis_matrix Parameters: axis_matrix (1D or 2D numpy array) = Array returned by pyplot once multiple figu...
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def sanitize(str, strip=[" "], remove=["\r", "\n"]): """Return a whitespace-stripped, newline-stripped string. Args: str (str): The string to be sanitized. strip (str[], optional) Additional things to be stripped. remove (str[], optional) Additional things to be removed. Returns: (str) ...
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def get_timeout(filesize): """ Get a proper time-out limit based on the file size. :param filesize: file size (int). :return: """ timeout_max = 3 * 3600 # 3 hours timeout_min = 300 # self.timeout timeout = timeout_min + int(filesize / 0.5e6) # approx < 0.5 Mb/sec return min(ti...
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def get_effective_batch_size(opts): """Returns effective batch size :param dict opts: A dictionary containing benchmark parameters. Must contain `batch_size`, `device` and optionally `num_gpus`. :return: Effective batch size. :rtype: int """ num_devices = 1 if opts['device...
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import torch def MaskedDenseMM(X, Y, rows, cols): """Helper routine for Backward computation for spmm Z = X[rows,:] x Y[cols,:] Args: X: dense matrix Y: dense matrix rows: row indices of X cols: row indices of Y Returns: Z as defined above """ #Z = X * ...
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def _strip_whitespace(text_content: str) -> str: """Return text_content with leading and trailing whitespace removed """ output_content: str = str(text_content) if text_content is not None and len(text_content) > 0: output_content = text_content.strip() return output_content
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import torch from datetime import datetime from typing import Counter def train_seed_generator(graph, args): """Generate Seed (Edges) based on some techniques [1] chronologically split, use fresh data (e.g. latest one year) [2] filter by edge type, here use the edge features dim=0, may use edge type exp...
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def get_first(iterable, default=None): """Get the first not None item from an iterable or default.""" if iterable: for item in iterable: if item: return item return default
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import base64 def base64_encode(bot, trigger): """Encodes a message into base64.""" if not trigger.group(2): return bot.reply('I need something to encode.') encodedBytes = base64.b64encode(trigger.group(2).encode('utf-8')) encodedStr = str(encodedBytes, 'utf-8') bot.say(encodedStr)
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def second_moment(data): """`second_moment` feature function :param data: data to evaluate feature function on :return: squared data """ return data**2
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def as_iterable(iterable_or_scalar): """Utility for converting an object to an iterable. Parameters ---------- iterable_or_scalar : anything Returns ------- l : iterable If `obj` was None, return the empty tuple. If `obj` was not iterable returns a 1-tuple containing `obj`. Ot...
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def decodeXMLName(name): """ Decodes an XML (namespace, name) pair from an ASCII string as encoded by encodeXMLName(). """ def invalid(): raise ValueError("Invalid encoded name: %r" % (name,)) if not name: invalid() if name[0] is "{": index = name.find("}") ...
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def build_input_map(protomap, inputs): """Builds a map to feed tensors in `protomap` using `inputs`. Args: protomap: A proto map<string,TensorInfo>. inputs: A map with same keys as `protomap` of Tensors and SparseTensors. Returns: A map from nodes refered by TensorInfo protos to corresponding input ...
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def _named_tempfile_func(error_class): """Create a mock function for NamedTemporaryFile that always raises. Parameters ---------- error_class : exception class The error that should be raised when asking for a NamedTemporaryFile. Returns ------- named_temp_file : callable A...
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def split_sample_name(s): """Split sample name into numerical and non-numerical parts Utility function which splits the supplied sample name into numerical (i.e. integer) and non-numerical (i.e. all other types of character) parts, and returns the parts as a list. For example: >>> split_s...
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def get_page(request): """Returns the page parameter from the request.GET dictionary if it exists else default to page = 1""" if 'page' in request.GET.keys(): page = request.GET['page'] else: page = 1 return page
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def aggregation(item1, item2): """ For an (airport, counters) item, perform summary aggregations. """ count1, total1, squares1, min1, max1 = item1 count2, total2, squares2, min2, max2 = item2 minimum = min((min1, min2)) maximum = max((max1, max2)) count = count1 + count2 total =...
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def get_round_id(rounds_list, tourn_id, tourn_day): """ Helper function to get the round_id based on the specified tourn_id and tourn_day """ for item in rounds_list: if item.get_tourn_id() == tourn_id: if item.get_day() == tourn_day: return item.get_round_id() ...
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import torch def load_pth_embeddings(params, source): """ Reload pretrained embeddings from a PyTorch binary file. """ # reload PyTorch binary file lang = params.src_lang if source else params.tgt_lang data = torch.load(params.src_emb if source else params.tgt_emb) dico = data['dico'] ...
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def hyphen_to_underscore_string(string): """ Convert hyphens to underscores in the given string """ return string.replace('-', '_')
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def extract_spectrum(fit_table, binNumber): """ Get the ``NBurst`` fitted spectrum for a given bin number. Parameters ---------- fit_table : the fit_table containg the fitted spectra binNumber : int the binNumber Returns ------- tuple of :class:`~numpy:numpy.ndarray` ...
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def read_as_list(filename): """Read the file at filename and store its contents into a list.""" with open(filename) as f: result = [line.rstrip() for line in f.readlines()] f.close() return result
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def harmonize_entities(default_ents, requested_ents): """Harmonizes two dictionaries representing default_ents and requested requested_ents. Given two dictionaries of entity: boolean key: value pairs, returns a dictionary where the values of entities specified in `requested_ents` override those specified ...
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def bookmarklet_html() -> str: """Return HTML for serving the bookmarklet. Returns: HTML with instructions and links """ return """ <!DOCTYPE html> <html> <head> <title>Salesforce Session ID Bookmarklet</title> <script> function copyId() {{ var idField = document.getEl...
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def trim_short_sentences(text: list): """ Trims short sentences from a list of sentences. """ text = [t for t in text if len(t) > 120] return text
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def safeformat(str, **kwargs): """Function safeformat A quick python (3.2+) way to avoid errors with missing keywords in strings. Taken from https://stackoverflow.com/questions/17215400/python-format-string-unused-named-arguments :param str: The list of strings with brackets :param **kwargs: Argumen...
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import random def random_id(length): # This function has two doctests inside it to give an example on how to make doctests """ Creates a random configuration key for the session - for safety of session variables. >>> len(random_id(50)) == 50 True >>> random_id('hello') Traceback (most recent...
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import torch def weighted_nll_loss(inpt: torch.Tensor, target: torch.Tensor, weight: torch.Tensor): """What `torch.nll_loss` with `reduction='weighted_average'` should be""" return ( torch.nn.functional.nll_loss(inpt, target, weight=weight, reduction="sum") / weight.take(target).sum() )
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