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import re def urlify(s): """ Replacing spaces, and other URL-hostile characters like question marks, apostrophes, exclamation points, etc. Example: >>> s = 'iso met' iso_met >>> s = 'isomet?' 'isomet' """ # Remove all non-word characters (everything except numbers and letters)...
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def _prompt_username(prompt="Username: "): """Prompt the user for username.""" try: while True: username = input(prompt).strip() if not username: print("Username cannot be empty, please try again.") elif "@" in username: print("Please e...
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def _course_runs_from_container(container): """ Pluck nested course runs out of a ``container`` dictionary, which is either the ``curriculum`` field of a program, or a program itself (since either may contain a ``courses`` list). """ return [ course_run.get('key') for course in c...
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def species_as_str(class_name, id, label, smiles, inchi, inchi_key): """ A helper function for generating a user-friendly string representation of a Species or NonPhysicalSpecies object. """ str_ = f"<{class_name}(" str_ += f"id={id}" if label is not None and label: str_ += f", label={la...
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def make_zipf(length): """Returns a list of counts that follows a Zipf distribution. Args: length: the number of counts to be generated Returns: A list of the provided length of floating point numbers corresponding exactly the zipf distribution. For example, for length=5: ...
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def distance(puissance: int, reserve: str) -> str: """Calculation of the shooting distance Args: puissance (int): Power of the shot reserve (str): Reserve of flakes Returns: str: Distance reached """ return str(puissance * len(reserve)//2 - 1) + 'm'
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def string_equal(name1, name2, case_sensitive=True, as_prefix=False): """ Determine if `name1` and `name2` are equal with taking special rules (`case_sensitive` and `as_prefix`) into account. If ``as_prefix==True``, strings match even if `name1` is just a prefix of `name2`. """ if not case_sens...
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def cli(ctx, library_id, dataset_id, purged=False): """Delete a library dataset in a data library. Output: A dictionary containing the dataset id and whether the dataset has been deleted. For example:: {'deleted': True, 'id': '60e680a037f41974'} """ return...
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def extract_prefix(keys): """ Takes a list of strings and extracts a common prefix delimited by a dot, for example:: extract_prefix(["entity.bang", "entity.bar", "entity.bat"]) entity. """ prefixes = set() for key in keys: parts = key.split(".") if len(parts) > 1: ...
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def identity(u): """ returns the field itself """ return u
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def camel_to_snake_case(s: str) -> str: """Convert a camel cased string into snake case. Args: s (str): A camel cased string. Returns: The snake case converted string. """ words = [] s_index = 0 for i in range(len(s)): if s[i].isupper(): words.append(s[s_ind...
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def augment_class(string): """ Given a [string] representing the contents of a <main-classification> tag (see USPTO XML Documentation 4.2 or later), realize the semantic meaning of the string and return a string of form recognized by USPTO: <main-class>/<sub-class>.<more-sub-class> """ mainc...
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def update_gms_group( self, group_pk: str, group_name: str, background_image_file: str = "", ) -> bool: """Update appliance group in Orchestrator .. list-table:: :header-rows: 1 * - Swagger Section - Method - Endpoint * - group - POST ...
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import re def extract_ints(raw: str): """ Extract integers from a string. """ return map(int, re.findall(r'(\d+)', raw))
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def wheeled_network_2_robot_action_decoder(action, wheel_max, wheel_min, diff=0.25): """ Decode wheeled action from network to linear and angular speed for the robot :param action: action for wheel spd :param wheel_max: max wheel spd :param wheel_min: min wheel spd :param diff: diff of wheel for...
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def normalize_weights_dictionary(weights_dict): """ Normalizes weights provided as values in passed weight_dict so that the sum of the weights equals 1. Arguments ---------- weights_dict: a dictionary containing the columns to be included in the weighted sum as keys, and the associate...
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from typing import Iterable def natural_prefix_len(values: Iterable[int]) -> int: """Counts the consecutive integers from 1 to n from the start of values.""" index = 0 for index, value in enumerate(values): if value - 1 != index: break return index
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import logging def set_log_level(config): """ Sets the default log level in the config dict. (logging.INFO) """ config['logger_level'] = logging.INFO return config
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def find_idx_in_co(idx,co): """ Find the index such that co[index,0]==idx. """ for i in range(len(co)): if co[i,0] == idx: return i return None
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def attr(obj, *path, **kwargs): """Safely get a nested attribute from an dictionary""" default = kwargs.get('default') if obj is None: return default res = obj for p in path: if p not in res: return default res = res[p] return res
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def boolean_integer(string_or_bool): """ Converter to convert a boolean or "0"/"1" string to a boolean. """ if isinstance(string_or_bool, bool): return string_or_bool if string_or_bool.strip() == "1": return True return False
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def distance_between_nodes(graph, node_1_id, node_2_id): """Calculate the distance between two nodes in a given graph. Args: graph: A Map object representing the graph containing the nodes to find the distance between node_1_id: An int representing the id of the first node in the pa...
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import re def load(stream): """Load the parameter keys, values and descriptions from a SOG infile into a Python data structure. Comments (lines starting with !) and empty lines are ignored. :arg stream: An iterable (tyically a file object) containing SOG infile formatted lines separ...
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def io(func): """ @io decorator for blocking io operations. In pycsp.parallel it has no effect, other than compatibility >>> @io ... def sleep(n): ... import time ... time.sleep(n) >>> sleep(0.01) """ return func
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def read_string_file(file): """ Read a file as a string. Args: file: File name Returns: File content as a string """ with open(file, "r") as f: str = f.read() return str
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def fwhm_dict(fwhm): """Convert a list of FWHM into a dictionary""" fwhm = [float(f) for f in fwhm] return {'fwhm_x': fwhm[0], 'fwhm_y': fwhm[1], 'fwhm_z': fwhm[2], 'fwhm_avg': fwhm[3]}
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def create_query(languages, min_stars): """ Create the query string for the GitHub search API, based on the minimum amount of stars for a project, and the provided programming languages. """ # Notice we are calling .strip() on each language, to clear it of leading # and trailing whitespace...
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def uppercase_first_letter(string): """Converts the first letter of a string to uppercase. >>> uppercase_first_letter('createHandler') 'CreateHandler' >>> uppercase_first_letter('CreateHandler') 'CreateHandler' >>> uppercase_first_letter('') '' """ return string[0].upper() + string[...
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import re def make_container_name(image: str, suffix: str = "") -> str: """ Make default container name for the given Docker image. Args: image: Docker image tag. suffix: Suffix to append to the container name. Returns: Docker container name. """ name = re.sub(r"[^a-z...
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def midi_to_pitch(midi: int) -> float: """Returns the absolute pitch in Hz for the given MIDI note value.""" return 440 * (2 ** ((midi - 69) / 12))
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import copy def to_list(value): """ Takes a value and wraps it into a list if it is not already one. The result is returned. If None is passed, None is returned. Parameters ---------- value : object value to convert Returns ------- list or None A list that wraps t...
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def remove_troublesome_chars(string: str): """Remove chars that cause trouble when pushed into postgres.""" if type(string) is not str: return string troublesome_chars = {'"': "", "'": "", "\n": " "} for k, v in troublesome_chars.items(): string = string.replace(k, v) return string
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def _check_hospital_unhappy(resident, hospital): """Determine whether a hospital is unhappy because they are under-subscribed, or they prefer the resident to at least one of their current matches.""" return len(hospital.matching) < hospital.capacity or any( [hospital.prefers(resident, match) fo...
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def escape_special_characters(input_string): """ Escape special characters to avoid unwanted behavior. Note that they are not stored in the index so you cannot search for them. Args: input_string (str): String to escape special characters of Returns: str: Input string that has its spe...
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import typing def _normalize_sample_plan(sample, plan) -> typing.Tuple[list, list]: """Normalize samples and plans to list of samples and plans Parameters ---------- sample : Sample metadata. If a beamtime object is linked, an integer will be interpreted as the index appears in the `...
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def clean_up_spacing(sentence: str) -> str: """Clean up leading and trailing space characters from the string. :param sentence: str - a sentence to clean of leading and trailing space characters. :return: str - a sentence that has been cleaned of leading and trailing space characters. """ return s...
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def find_features(extent, df): """ given an extent and a dataframe, return a new dataframe containing only features that fall within the extent Parameters ---------- extent: list -- geographic extent in lon (deg E)/lat (deg N) df: the geopandas dataframe to slice """ xleft, xrigh...
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def create_geometry_string(geometry): """This function converts MolecularData geometry to Dirac geometry. This function is taken from Openfermion-Psi4 interface. Args: geometry: A list of tuples giving the coordinates of each atom. example is [('H', (0, 0, 0)), ('H', (0, 0, 0.7414))]...
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def update_firm(bac, firm): """Update the Firmicutes slider.""" return 100 - bac
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def float_if_not_none(value): """ Returns an float(value) if the value is not None. :param value: None or a value that can be converted to an float. :return: None or float(value) """ return None if value is None else float(value)
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def influxdb_config(influxdb): """ Returns the InfluxDB relation data as dict to use in config. :param influxdb: InfluxDB relation data object :type influxdb: InfluxdbClient :returns: dict with InfluxDB configuration options """ return { "host": influxdb.hostname(), "port": ...
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def get_clipped_freq(records_l, records_r, records_s, minclip=4): """ Get the number of reads that are clipped over the breakpoints in a meaningful way. For the left and right breakpoints, look for clipping in the SV. For the single breakpoint, look for clipping on either side of the read. :param recor...
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from typing import List from typing import Dict from typing import Any def convert_list_to_comma_separated_string(values: List[Dict[str, Any]], key: str) -> str: """ Retrieve values of an attribute in comma separated manner from response to populate human readable output :param: values: list of attribute...
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def decrement_items(inventory, items): """Decrement items in inventory using elements from the `items` list. :param inventory: dict - inventory dictionary. :param items: list - list of items to decrement from the inventory. :return: dict - updated inventory with items decremented. """ for item...
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def verse(bottle): """ Sing a verse """ current_bottle = '1 bottle' if bottle == 1 else f'{bottle} bottles' next_bottle = 'No more bottles' if bottle == 1 else f'{bottle - 1} bottle' if bottle == 2 else f'{bottle - 1} bottles' return '\n'.join([ f'{current_bottle} of beer on the wall,', ...
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import calendar def utc_to_ts(y, m, d, hrs_utc): """Converts from a UTC tuple-time to unix epoch time. y,m,d: The year, month, day for which the conversion is desired. hrs_tc: Floating point number with the number of hours since midnight in UTC. Returns: The unix epoch time. >>...
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def argmin(iterable): """Return index of minimum value.""" lowest_val = iterable[0] lowest_i = 0 for i, val in enumerate(iterable): if val < lowest_val: lowest_val = val lowest_i = i return lowest_i
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def normalize_state(state): """Convert state into standardized (slurm style) state.""" state = state.lower() if state == 'queued': state = 'pending' return state
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def set_file_content(file, content): """ write content to file :param file: the file to rewrite its content :param content: content to write to the given file """ nchar_written = 0 with open(file, 'w') as f: nchar_written = f.write(content) return nchar_written
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def ensure_list(var): """Makes sure that `var` is a list. Parameters ---------- var List like object Returns ------- list `var` as list """ return var if type(var) is list else [var]
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def get_entry_by_filename(entries, fn, key=None): """Search for an entry in entries where key(entry['file']) matches key(fn) and returns it. If key is None than file names are compared directly. Returns None if none is found.""" if key is None: key = lambda x: x for e in entries: i...
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import uuid def CreateBudget(client): """Adds a new budget. Args: client: an AdWordsClient instance. Returns: A budget ID. """ budget_service = client.GetService('BudgetService', version='v201809') budget = { 'name': 'Interplanetary budget #%s' % uuid.uuid4(), 'amount': { '...
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def _job_id_from_worker_name(name): """ utility to parse the job ID from the worker name template: 'prefix--jobid--suffix' """ _, job_id, _ = name.split("--") return job_id
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def transpose_board(board): """Transpose the board --> change row to column""" return [list(col) for col in zip(*board)]
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from typing import Union def sqrt(num: Union[int, float]) -> float: """ Get square root of num or negative square root of positive num if num is negative. :param num: int, float :return: float >>> sqrt(0) 0.0 >>> sqrt(1) 1.0 >>> sqrt(81) 9.0 With negative number. >>>...
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def count_data(data, code = None): """Helper function that counts the number of data points in an arbitrary list of lists""" if isinstance(data,list): sum = 0 for d in data: sum += count_data(d, code=code) return sum if data != '' and data != 'NA': if code == None or data == code: return 1 return 0
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from typing import List from typing import Set def unique_answers(group: List[str]) -> Set[str]: """Finds the unique answers in a given group, that anyone gave.""" answers = set() for member in group: answers.update(answer for answer in member) return answers
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import re def natural_keys(text): """Sort list of string with number in human order. Examples ---------- >>> l = ['im1.jpg', 'im31.jpg', 'im11.jpg', 'im21.jpg', 'im03.jpg', 'im05.jpg'] >>> l.sort(key=tl.files.natural_keys) ... ['im1.jpg', 'im03.jpg', 'im05', 'im11.jpg', 'im21.jpg', 'im31.jpg'...
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def get_cam_location_by_id(cam_id): """Get the location of the camera by its ID""" lat = None # latitude lng = None # longitude if cam_id == 0: # clairton1 lat = 40.305062 lng = -79.876692 elif cam_id == 1: # braddock1 lat = 40.392967 lng = -79.855709 elif cam_id ...
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def _simplify_features(df): """ Remove 'standard error' columns from the breast cancer dataset for simplicity and replace spaces with underscores. """ simple = [col for col in df.columns if 'error' not in col] simple_df = df[simple] simple_df.columns = [col.replace(' ', '_') for col in simpl...
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import requests import string def count_capital_words_in_website(url: str) -> int: """ Given a URL, count the number of words which start with a capital letter """ text = requests.get(url).text count = 0 for text_word in text.split(): if text_word[0] in string.ascii_uppercase: ...
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import struct def unpack_linkmsg(data): """For *LINK RTNETLINK messages, unpack the body Discards a number of uninteresting parts. Returns if type, flags and remainder of message """ if_family, _, if_type, index, flags, change = struct.unpack("=BBHiII", ...
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from typing import Counter def uniq_tokens_css(thresh, *collection_vals): """ Extract unique tokens in comma separated strings, contained in a collection, return list of unique tokens that occur more than a threshold value. Apply sorted to output for reproducible output. """ temp_lists = [...
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def valid_gain(gain): """ Use this parse an argument as if it were a float and get back a valid gain as a float. Raises ValueError if passed an un-parse-able value. """ try: my_gain = round(float(gain), 1) except TypeError: raise ValueError("Could not parse value as into a valid ...
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import re def sanitize_query(query): """Remove special characters from a given query. Args: query: str: String to sanitize Returns: A sanitized string without special characters. """ return re.sub(r"[^a-zA-Z0-9_]+", " ", query)
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import re def containsURL(line: str): """ Checks if the line contains any URLs Parameters ---------- line : str\n The string that needs to be checked if it countains URLs Returns ------- bool\n True if it contains URL and False if no URL in 'line' """ ...
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def get_tbl_struct_info(content_tbl): """ get the structural information of a table, including: - the number of columns - the difference between the number of actual cells and the estimated cells """ tbl_struct = content_tbl[0].split(',') tbl_struct = [int(val) for val in tbl_struct[1:]] tbl_struct...
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def time_std(xr_da, time_name="time"): """ Calculate standard deviation along the time axis of an `xarray.DataArray`. Parameters ---------- xr_da: xarray.DataArray Data array with a time coordinate. time_name: str, optional Name of t-coordinate Returns ------- xarra...
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def QLineEdit_parseVectors(lineedit): """ Return one or more component real vector as list from comma separated text in QLineEdit widget or None if invalid. """ try: text = lineedit.text() values = [ float(value) for value in text.split(",") ] return values except: ...
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def find_below(target, valid_data): """ Finds the nearest valid cell below the target. Parameters ---------- target: tuple Indices of target cell valid_data: np.array(logical) Returns ------- below_idx: tuple Indices of valid cell immediately below target """ #...
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def _join_dictable_with_defaults(tbl_def1, tbl_def2): """ performs a join while allowing for a default :Example: -------------- >>> from pyg import * >>> tbl_def1 = dictable(a = [1,2,3], b = [4,5,6]), dict(b=0) >>> tbl_def2 = dictable(a = [2,3,4], c = [5,6,7]), dict(c=1) >>> res = _...
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from typing import List import copy def get_flow_keys(results: dict) -> List[str]: """Get keys of optical flow in results. Args: results (dict): The data that includes data and meta information and used in data augmentation pipeline. Returns: List: keys of optical flow in res...
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def has_units(qty, units): """ Test quantity (`qty`) for compatibility with given `units`. .. note:: The following two expressions are equivalent: 1. ``chemtk.units.has_units(qty, units)`` 2. ``qty.has_units(units)`` Parameters ---------- qty : :class:`Quantity...
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import torch def _multiclass_accuracy(prediction, ground_truth): """ Computes metrics for multiclass classification Arguments: prediction, np array of int (num_samples) - model predictions ground_truth, np array of int (num_samples) - true labels Returns: accuracy - ratio of accurate pre...
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def is_tls_record_magic(d): """ Returns: True, if the passed bytes start with the TLS record magic bytes. False, otherwise. """ d = d[:3] # TLS ClientHello magic, works for SSLv3, TLSv1.0, TLSv1.1, TLSv1.2 # http://www.moserware.com/2009/06/first-few-milliseconds-of-https.html#c...
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def fix_kwds(kwds_dict, **kwargs): """ Given a dictionary of plot parameters (kwds_dict) and a dict of kwds, merge the parameters into a single consolidated dictionary to avoid argument duplication errors. If kwds_dict an kwargs have the same key, only the value in kwds_dict is kept. Parameter...
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def percentage_of_num(percent, whole): """returns percent of a number. e.g. what is 5% of 20 """ return (percent * whole) / 100.0
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def addExposures(exposureList): """Add a set of exposures together. Parameters ---------- exposureList : `list` of `lsst.afw.image.Exposure` Sequence of exposures to add. Returns ------- addedExposure : `lsst.afw.image.Exposure` An exposure of the same size as each exposure...
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def spyOn(layers, names, verbose=False): """Add hooks to the specified layers to capture their outputs. The outputs are stored in a dict(), with the names given as keys. Args: -layers : Array containing the model layers to spy on. -names : Array containing the names of the layer, to be used as k...
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def filter_entry(node): """Filters on nodes of type entry""" return node.type == "Entry"
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import json def get_course_urls(dept): """ Returns a list of all the course urls in the given department """ with open(f"data\{dept}_dict.json", 'r') as fp: dept_dict = json.load(fp) dept_urls = [k['url'] for k in list(dept_dict.values())] return dept_urls
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def get_emailids_query(conn_, query_='', qtype_='from', qexplicit_=False, **kwargs): """ Get all email ids from the emails after a simple query. Accepts explicit queries or one structures through query_ and qtype_ (Dev note: should be created more robust for future use!) """ assert qtype_.upper() ...
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def age_check(df): """ Checks age is within permitted bounds If age is missing or outside bounds, replaces age with median age Parameters ---------- df : main dataset Returns ------- df : main dataset adds age_admit column """ df.loc[df['age_admit'] > 110, 'age...
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def keys_from_hash(hexdigest): """ Return a cache keys triple for a hash hexdigest string. NOTE: since we use the first character and next two characters as directories, we create at most 16 dir at the first level and 16 dir at the second level for each first level directory for a maximum total of ...
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def _convert_img_to_str(img): """ Convert an image in numpy array format, shape (1, height, width, depth), to a string. Depth is 1 for grayscale, 3 for RGB. Returns: img_string height width depth """ # height, width, and depth are all going to be features in the seri...
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def read_algin(filepath: str) -> str: """read word or phone alignment file. <start-sample> <end-sample> <token><newline> Args: filepath (str): [description] Returns: str: token sepearte by <space> """ aligns = [] # (start, end, token) with open(filepath, 'r') as f: ...
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def list_instances(compute, resource_group): """Returns list of Azure instance resources for specified resource_group :param compute: Azure object using ComputeManagementClient :param resource_group: string, name of Azure resource group :return: list of Azure VMs in resource_group :rtype: list ...
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import json def read_dict(path): """ Reads a dictionary from a file using JSON. This file should have been written by write_dict. :param path: complete path including file name for output file :return: output dictionary from file """ with open(path) as file: out_dict = json.load(f...
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import re def remove_yaml_header(content: str) -> str: """删除 site 用的 md 文档中的 yaml 头 这些头信息,在简书或博客园中是多余信息,没有意义,所以需要去除 Args: content (str): 带 yaml 的文章内容 Returns: str: 删除 yaml 头的文章内容 """ return re.sub(r"---\n.+?\n---\n{1,2}", "", content, flags=re.MULTILINE | re.DOTALL)
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def get_chars_hashed_by_yoffset(csv_reader, precision, pages=None): """ Hash the characters by the y-offset height rounded to [precision] decimals. """ line_hash = {} for i, row in enumerate(csv_reader): if pages: if int(row['pageid']) not in pages: continue ...
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from datetime import datetime def to_isoformat(date_str: str) -> str: """ Last-modified to isoformat Sat, 27 Jun 2020 02:00:18 GMT => 2020-06-27T02:00:18 """ return datetime.strptime(date_str, "%a, %d %b %Y %H:%M:%S %Z").isoformat()
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def calc_combined_lens(f1, f2, d): """Calculate focal length and principal planes of a compound lens. Args: f1: focal length of first lens f2: focal length of second lens d: distance Returns: f: effective focal length of combined lens pp1: distance from first lens t...
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def bit_not(a: int) -> int: """ ~ 取反 :param a: :return: """ return ~a
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import typing def check_key_type(key: typing.Union[str, bytes]): """ Enforce the type of the key to bytes. Parameters ---------- key: str | bytes The key to check Returns ------- str The key as bytes """ if isinstance(key, bytes): return key return...
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def obj_index(obj, key): """Get a key from an object""" return (getattr(obj, "__getitem__", None) or getattr(obj, "__getattribute__"))(key)
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import math def r2d(r): """Convert radians into degrees.""" return math.degrees(r)
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def utilSameType(agent, otherAgent, cutoff=1): """ matchUtilFct overload utility = 1 if same type, 0 otherwise """ return cutoff * (agent.type == otherAgent.type)
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import types def writer_checkout_only(wrapped, instance, args, kwargs) -> types.MethodType: """Only allow a method to be called in a write-enable checkout. Parameters ---------- wrapped bound method which is being called instance class object being operated on ie. ``instance is se...
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def expected(A, B): """ Calculate expected score of A in a match against B :param A: Elo rating for player A :param B: Elo rating for player B """ return 1 / (1 + 10 ** ((B - A) / 400))
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def _TestPath(test_name, chart_name, trace_name): """Get the slash-separated test path to send. Args: test: Test name. Typically, this will be a top-level 'test suite' name. chart_name: Name of a chart where multiple trace lines are grouped. If the chart name is the same as the trace name, that sig...
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