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def main(): """ main body """ # constants x_init = - 1 / 300 end = 15 step = 0.001 # integrate numerically record, count = num_solve(x_init, x_dot, step, end) print(record) # time axis time = np.linspace(0, end, count) # plot both solutions in a graph plt.plot(time, re...
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def ldns_dnssec_rrsets_contains_type(*args): """LDNS buffer.""" return _ldns.ldns_dnssec_rrsets_contains_type(*args)
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def parameters_from_proto(msg: Parameters) -> typing.Parameters: """.""" tensors: List[bytes] = list(msg.tensors) return typing.Parameters(tensors=tensors, tensor_type=msg.tensor_type)
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def create_loopback_interface(interface_name, vrf="default", ipv4=None, interface_desc=None, **kwargs): """ Perform a PUT and/or POST call to create a Loopback Interface table entry for a logical L3 Interface. If the Loopback Interface already exists and an IPv4 address is given, the function will update th...
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def restart_directory_services(): """ Restarts directory services (opendirectoryd). Only required when executing script on booted volume. """ if is_booted_volume(): subprocess.call(["killall", "opendirectoryd"]) print "Restarted Directory Services"
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def _detail_collection_tuple(worker: AbstractWorker, my_tuple: Tuple) -> Tuple: """ This function is designed to operate in the opposite direction of _simplify_collection. It takes a tuple of simple python objects and iterates through it to determine whether objects in the collection need to be conv...
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def fake_check(name='fake_check', tags=None, is_active=True, run_return=None, run_exception=None, run_logs=None, run_files=None, changed=False, get_var_return=None): """Returns a new class that is compatible with OpenShiftCheck for testing.""" _name, _tags = name, tags class FakeCheck(objec...
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def hasScript(s): """Dig out evil Java/VB script inside an HTML attribute. >>> hasScript('script:evil(1);') True >>> hasScript('expression:evil(1);') True >>> hasScript('http://foo.com/ExpressionOfInterest.doc') False """ s = decode_htmlentities(s) s = ''.join(s.split()).lower() for t ...
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def rename_image(image_path): """Take in image path and rename image by site, camera, and datetime.""" # Get image datetime. with exiftool.ExifTool() as et: metadata = et.get_metadata(image_path) datetime_string = re.sub('[^0-9]+', '', metadata['EXIF:DateTimeOriginal']) if metadata["EXIF:Mak...
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def _open_db(): """Open the database and set up the tables""" global _DB _DB = sqlite3.connect(_DB_FILENAME) _DB.execute("""CREATE TABLE IF NOT EXISTS kills( timestamp CHAR(50) NOT NULL, winner CHAR(50) NOT NULL, winner_guild CHAR(50) NOT NULL, loser CHAR(50) NOT NULL, loser_guild CH...
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def add_link_data( link_proto: core_pb2.Link, ) -> Tuple[InterfaceData, InterfaceData, LinkOptions, LinkTypes]: """ Convert link proto to link interfaces and options data. :param link_proto: link proto :return: link interfaces and options """ iface1_data = link_iface(link_proto.iface1) ...
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def _create_sender(net_type, msg_queue_size=2*1024*1024*1024): """Create a Sender communicator via C api Parameters ---------- net_type : str 'socket' or 'mpi' msg_queue_size : int message queue size (2GB by default) """ assert net_type in ('socket', 'mpi'), 'Unknown network...
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def evaluate_predictions_per_char(predictions, original_sentences, answers): """Evaluates predictions per char, returning the accuracy and lists of correct and incorrect sentences.""" predicted_chars = [] sentences_with_preds = [] errors = set() correct_sentences = [] total = 0 correct = 0 ...
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def n2es(x): """None/Null to Empty String """ if not x: return "" return x
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def eval_loss_and_grads(generated): """ Computes the loss and gradients :param generated: The generated image :return: The loss and the gradients """ generated = generated.reshape((1, img_height, img_width, 3)) outs = f_outputs([generated]) loss_value = outs[0] grad_values = outs[1]....
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def check_lh5_groups(f_lh5): """ useful but verbose. open an LH5 file store and identify all groups, datatypes, etc. """ def print_attrs(name, obj): print(name) # show group name only # show attributes (lh5 datatypes) for key, val in obj.attrs.items(): print(f" ...
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def rand_no_gen(seed, a, c, m, no_of_randnos): """ This function generates a numpy array of random numbers (positive integers) using Linear congruent method If r_i is initial random number, the next random number in the sequence is given by r_i+1 = (a*r_i + c) % m The random numbers generated will ...
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def get_genes(db, location=None, use_strand=False, overlap=True): """ Get Gene objects """ gene_ids = get_genes_ids(db, location, use_strand, overlap) genes = {} for i, gene_id in enumerate(gene_ids): genes_temp = get_gene(db, gene_id) if genes_temp: for ensembl_id, ...
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def test_generate_names_list_with_custom_seed_data_path(): """ Case: generate random eos list of names with custom seed data path. Expect: eos names are returned. """ data_path = dirname(__file__) + '/' + '../custom_data/data.txt' runner = CliRunner() result = runner.invoke(cli, [ '...
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def proc_frac(cases, lcl, frac=True): """fraction or sum of process occurrences per case""" cl_sum = cases.case.apply(lambda x: 0) for cl in lcl: cl_sum += cases.case.apply(lambda x: cl_frac_in_case(x, cl, frac=False)) if frac: sizes = cases.case.apply(lambda x: x.classes.size) r...
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def _delay_auto_approval(version): """Delay auto-approval for the whole add-on for 24 hours.""" # Always flag for human review. from olympia.addons.models import AddonReviewerFlags _flag_for_human_review(version) in_twenty_four_hours = datetime.now() + timedelta(hours=24) AddonReviewerFlags.obj...
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def _plot_io(**kwargs): """ Helper method to optionally save the figure to file. :param filename: name of the file to save to, defaults to None (doesn't save) :type filename: str, optional :param dpi: dpi of figure to save or plot, defaults to 300 :type dpi: int (between 50-500) :param show...
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def train(net, optimizer, rollout, gamma=0.95): """ Train neural network with a given rollout. """ state_batch, action_batch, cost_batch, next_state_batch, done_batch = zip(*rollout) state_batch = torch.FloatTensor(state_batch) action_batch = torch.FloatTensor(action_batch) cost_batch = torc...
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def leArquivosNM(local): """ deve ler arquivos sem passar na memoria testar depois """ with open(local) as arqui: for linha in arqui: print(linha)
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def print_history(request): """Печать истории забора материала за день""" from reportlab.pdfbase import pdfmetrics from reportlab.pdfbase.ttfonts import TTFont from reportlab.platypus import Table, TableStyle from reportlab.lib import colors from reportlab.platypus import Paragraph from repo...
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def get_source_version(service_name = None, default_version=None): """ Gets the source (from) version of a service participating in an upgrade. If there is no upgrade or the specific service is not participating, this will return None. :param service_name: the service name to check for, or None to extract it f...
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def strict_match_data(payload): """ Takes in explanation data, and a source of unlabeled data and will annotate the unlabeled data with the explanations provided. Converts explanations into binary labeling functions and if an explanation applies to a datapoint the label associated with the e...
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def CollectProcesses_NoCache(): """Collect raw data here, which can be formatted in Parse(). Called from Parse()""" metrics = [] # Get our rolled-up parent processes for creating metrics for info in GetParentProcessItems(): is_system_process = False if not info['cmdline']: ...
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def stop_mdsd(): """ Stop mdsd process :return: None """ pids = get_lad_pids() if not pids: return 0, "Already stopped" kill_cmd = "kill " + " ".join(pids) hutil.log(kill_cmd) RunGetOutput(kill_cmd) terminated = False num_checked = 0 while not terminated and num...
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def get_translation_matrix(translation_vector): """Convert a translation vector into a 4x4 transformation matrix """ T = mx.nd.zeros(translation_vector.shape[0], 4, 4).as_in_context( context=translation_vector.context) t = translation_vector.contiguous().view(-1, 3, 1) T[:, 0, 0] = 1 T...
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def task_install_node_certificates(ca_cert, node_cert, node_key): """ Install certificates and private key required by a node. :param FilePath ca_cert: Path to CA certificate on local machine. :param FilePath node_cert: Path to node certificate on local machine. :param FilePath node_key: Pa...
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def test_package_version() -> None: """Test package version calculation.""" assert package_version() == current_version
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def bayes_model_avg_viscous_posterior_2(): """ Plot the viscosity posterior using a Bayesian Model Average of the visc. correction models. Beforehand one needs the posteriors of each invididual model, as well as their mutual Bayes factors calculated. """ colors = matplotlib.cm.Oranges(np.linspace( ...
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async def on_ready(): """Display information about turning on""" print(f"{bot.user} is online")
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def json_subscription_property(request, user_profile, subscription_data=REQ( validator=check_list( check_dict([["stream", check_string], ["property", check_string], ["value", check_variable_type( [check_string, check_bool])]...
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def _get_int_axis_extra_coords(cube_list, axis_coord_names, axis_coord_units, axis): """ Retrieve all extra coord names and units assigned to a data axis along a sequence of cubes. Parameters ---------- cube_list: `list` of `ndcube.NDCube` The sequence of cubes from which to extract the ...
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def est_shape( bg, tracking_settings_frame=None ): """Estimate fly shape from a bunch of sample frames.""" interactive = params.feedback_enabled and tracking_settings_frame is not None if interactive: progressbar = \ wx.ProgressDialog('Computing Shape Model', ...
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def get_class_methods(class_item=None): """ Returns the class methods of agiven class object :param class_item: Class item to introspect :type class_item: object :returns: list -- Class methods """ from types import FunctionType _type = FunctionType return [x for x, y in iteritems(c...
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def get_default_benchmark_simulated_datasets(): """Default parameter sets to generate simulated data for benchmarking. The training periods and forecast horizon are chosen to complement default real datasets. Every tuple has the following structure: (data_name, frequency, training_periods, forecast_hori...
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def plot_figures_dsco_30days(number_of_days=30): """ Download and plot the data from DSCOVR for the last 30 days starting from the present time. """ print(f"Code execution for DSCOVR 30 days data started at at (UTC):" + f"{datetime.datetime.utcfromtimestamp(time.time()).strftime('%Y-%m-%d %H:...
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def load_config(cfg_path): """Load the config from a json file""" if not os.path.exists(cfg_path): raise RuntimeError('file {} does not exists!'.format(cfg_path)) with open(cfg_path, 'r') as f: cfg = json.load(f) return cfg
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def _cleanup_package_deploy(): """Delete local temp deploy directory.""" local('rm -r /tmp/endaga-packages-deploy')
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def all_reduce_v2(t, group_size, group_key, instance_key, merge_op='Add', final_op='Id', communication_hint='auto', timeout=0): """Reduces tensors collectively, across devices. Args: t:...
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def main(args: typing.List[str] = None) -> None: """Entry point.""" if args is None: args = sys.argv[1:] if "DISABLE_TIMEWARP" not in os.environ: try: # Initialize the Time Warp client. client = Client() # Process command line arguments. pars...
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def test_area_with_area_no_root(test_page): """Area inside Area""" test_page.navigate() t = test_page.area_in_area_no_root.inner_area.link.text assert "I'm just a link in a div." == t
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def rollback_snapshot(vm_name, snapshot_name): """ Restore a VM to a previous state based on the given snapshot. :param vm_name: the VM name to be restored :param snapshot_name: the snapshot name to be used for rollback """ with RbdManager(CEPH_CONF, POOL_NAME, NAMESPACE) as rbd: disk_...
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def get_actions(chunkstart, chunkstop, grid): """Updates policy for a subsection of the grid with greedy actions. Input should be the first and last row of the subsection.""" actions = ['up', 'down', 'left', 'right'] new_actions = [] for i in range(chunkstart, chunkstop): ...
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def clientConnectionLost((host, port)): """ Called when a connection is lost. Not sure how to use this yet. """ debug("connections.py: Connection has been lost?", info=True) """ Remove the connection from the node. """ todelete = None for uid in universe: if universe[uid].get...
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def log(func): """Decorator for functions, to log start/end times""" @wraps(func) async def wrapper(*args, **kwargs): _id = uuid.get_and_increment() args_text = truncate(args, 2000) kwargs_text = truncate(kwargs, 2000) logger.debug(f"{func.__name__} ({_id}) called with {args...
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def test_get_homepage(request_hom, test_ssm_parameters): """ Run a request through the lambda_handler and save the response for later testing. """ ssm_prefix = os.environ.get("SSM_PREFIX") stubber = stubs.mock_config_load_ssm_parameters(ssm_prefix, test_ssm_parameters) with stubber: ...
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def getFirstFrame(video, name): """ The function saves the video file's first frame in the current folder. Params: video (string): Path to the video file name (string): Name of the new image Returns: name (string): name of the created image """ #Open t...
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def deconv_size(input_height, input_width, stride=2): """ Compute the feature size (height and width) after filtering with a specific stride. Mostly used for setting the shape for deconvolution. Args: input_height (int): height of input feature input_width (int): width of input f...
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def add_pagerank(parts_response, uri2rank): """ Adds the pagerank score for each part Arguments: parts_response {List} -- List containing all parts from the SPARQL query uri2rank {List} -- List of each part and its calculated pagerank score """ for part in parts_response: s...
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def G(x, alpha, shift=0): """ Return Gaussian line shape at x with HWHM alpha """ return np.sqrt(np.log(2) / np.pi) / alpha\ * np.exp(-((x - shift) / alpha)**2 * np.log(2))
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def boolean_op_wrapper( _cls=None, *, and_: Optional[Type[BinaryOp]] = _And, or_: Optional[Type[BinaryOp]] = _Or, not_: Optional[Type[UnaryOp]] = _Not, ): """ Provide the atom class with __and__, __or__ and __not__ dunder methods. :param _cls: the class. :param and_: the class for t...
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def _evaluate_model_single_file(target_folder, test_file): """ Evaluate a model for a single recording. Parameters ---------- target_folder : string Folder where the model is test_file : string The test file (.hdf5) """ logger.info("Create running model...") model_sr...
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async def async_setup_entry(hass: HomeAssistant, entry: ConfigEntry) -> bool: """Set up Modem Caller ID from a config entry.""" device = entry.data[CONF_DEVICE] api = PhoneModem(device) try: await api.initialize(device) except EXCEPTIONS as ex: raise ConfigEntryNotReady(f"Unable to o...
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def prettify(): """Prettifies JS and SCSS code using prettier""" for cmd in env["box_prettify"]: run_local(cmd)
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def run_model(task=None, model_name=None, dataset_name=None, config_file=None, saved_model=True, train=True, other_args=None): """ Args: task(str): task name model_name(str): model name dataset_name(str): dataset name config_file(str): config filename used to modify...
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def _expect_array(obj): """Return an ndarray, or raise TypeError.""" if obj in (0, "0"): return array([ZERO]) if obj in (1, "1"): return array([ONE]) if obj in ("x", "X"): return array([LOGICAL]) if obj == "?": return array([ILLOGICAL]) if isinstance(obj, BoolExpr...
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def internal_rescue( container: KindN[_RescuableKind, _FirstType, _SecondType, _ThirdType], function: Callable[ [_SecondType], KindN[_RescuableKind, _FirstType, _UpdatedType, _ThirdType], ], ) -> KindN[_RescuableKind, _FirstType, _UpdatedType, _ThirdType]: """ Bind a function over a ...
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def test_superbias_fft(): """Test the SuperbiasFFTTask""" task = bias.SuperbiasFFTTask() if RUN_TASKS: task.run(slots=['S00'], **RUN_OPTIONS)
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def test_polling_locations_valid_config(volttron_instance, query_agent, config, result_topics, api_wait): """ :param volttron_instance: :param query_agent: :param config: :param result_topics: :return: """ agent_uuid = None try: agent_...
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def _library_rule_attrs(): """Returns an attribute dictionary for `swift_library`-like rules. The returned dictionary contains the same attributes that are defined by the `swift_library` rule (including the private `_toolchain` attribute that specifies the toolchain dependency). Users who are authoring...
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def connection_stats(): """ Get packet statistics. """ return qmilib.wds_get_packet_statistics()
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def date_after(d): """ Input: an integer d Quickly find out the actual calendar date of some day in the EPIC dataset. Output: the date, d days after 2015-06-13 00:00:00.000 """ t_i = Time("2015-06-13", format='iso', scale='utc') # make a time object t_new_MJD = t_i.mjd + d #...
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def load_partial_vars(exe, init_model, main_program): """tbd""" assert os.path.exists(init_model), "[%s] cann't be found." % init_model def existed_params(var): """tbd""" if not isinstance(var, fluid.framework.Parameter): logging.info("%s not existed", var.name) retu...
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def __remove_punctuation(string): """ Remove all the punctuation symbols and characters in a string. :param string: the string where the punctation characters must be removed. :return: a string without punctuation. """ return re.sub("[!@#£$.()/-]", "", string)
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def main(image_id: str = '100241706_00005_2'): """ Test an annotation drawing the corresponding bounding boxes on an image :param image_id: the base name of the image to be tested (without file extension) """ # Set up all the paths to the images path_to_dataset = os.path.join('datasets', 'kaggl...
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def pad_chunk_columns(chunk): """Given a set of items to be inserted, make sure they all have the same columns by padding columns with None if they are missing.""" columns = set() for record in chunk: columns.update(record.keys()) for record in chunk: for column in columns: ...
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def username_check(username: str) -> str: """ Run a loop to check and determine if a username is valid. :param username: The username to check. """ running = True while running: flag1 = True flag2 = True if username_exists(username): print_error(f"'{username...
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def test_collapse_whitespace(mock_osp): """ Should collapse all 2-char+ strings of whitespace. """ text = 'w1 \n\t w2 \n\t w3' path = mock_osp.add_file(content=text, ftype='plain') syllabus = Syllabus(path) assert syllabus.unbroken_text == 'w1 w2 w3'
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def get_next_match( map ): """ This changes the inverse table by removing hits""" todelete = [] retval = None for px,s in map.iteritems(): if len(s) > 1: retval = s.pop(),s.pop() if retval[0][0] == retval[1][0]: s.add( retval[1] ) #print retval, s retval = None co...
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def coefficient(multiset): """ multinomial coefficient of the multiset """ S = multiset.size_as_nat() return math.factorial(S) / facto(multiset)
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def prune_model_one_shot_iter( model: ModelProto, nodes: List[NodeProto], sparsity: Union[float, List[float]] ): """ Iteratively prune a model in-place with one shot pruning (no retraining) according to magnitude pruning. Does so in an unstructured way currently :param model: the model to apply pru...
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def join_contains(): """**Flask POST rule.** Spatial join on two spatial files drived by contains relationship. --- post: summary: Spatial join on two spatial files drived by contains relationship. description: Create a new spatial file on the condition that the geometry of the **other*...
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def download_site(url, q): """Request an URL. If it can properly be retrieved, add it to queue `q` so that it gets written to a file with the job manager.""" global HEADERS try: with requests.get(url, headers=HEADERS) as response: response_length = len(response.content) p...
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def read_pickle(text_folder_path, file_name): """ Read a pickled file from a directory. Parameters: text_folder_path (string): path to the directory where the file is located file_name (string): name of file to read. Returns: read_text (string): text read from the pickle file. """ ...
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def parse_request_table(path: str) -> pd.DataFrame: """Return a dict of userid mapped to keywords. Capitalised columns are in the original file. Derived columns are all lower case. """ df = pd.read_excel(path).dropna() df["username"] = df["Link"].str.split("/").str[-1] return df
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def load_model(model_path): """ Loads the model from the path specified. """ return joblib.load(model_path)
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def parse_system(system): """ Parse a system string into a pair of projectiles and a beam energy. """ match = re.fullmatch('([A-Z]?[a-z])([A-Z]?[a-z])([0-9]+)', system) return match.group(1, 2), int(match.group(3))
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def addIndexList(root): """ Add an index listing for all terms inside <span class="index-term"> """ indexes = dict() for num, node in enumerate(CSSSelector('span.index-term')(root)): term = node.text_content().strip() term_id = 'index-term-%d' % num node.attrib['id'] = term_id ...
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def is_negligible(in_text): """" Checks if text or tail of XML element is either empty string or None""" if in_text is None: return True elif type(in_text) is str: if in_text.strip(chr(160) + ' \t\n\r') == '': return True else: return False else: r...
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def get_MD5(file: Union[BufferedReader, str]) -> str: """ Creates a MD5 hash of a file """ buffered_file: BufferedReader = None if isinstance(file, str): buffered_file = open(file, 'rb') else: buffered_file = file chunk_size = 8192 h = md5() while True: chu...
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def pytest_addoption(parser): """declare options to be used when invoking pytest""" config = ConfigOption( "config", "default.conf", "the configuration file", searchpath=SCRIPTDIR ) options = ( Option(name="x", default="defaultx", help="option x"), Optio...
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def logbuf(msg, buf): """used for debugging test code.""" if buf is None: buf = b'' logmsg(msg + ': [' + str(len(buf)) + ']') for i in list(range(0, len(buf), 48)): logmsg(' ' + repr(buf[i:i+48])) return
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def jsd_distance_0(x_list, data_list): """ :param x: a list or an np.ndarray data: a list or an np.ndarray :return: jsd_list measure distance between numbers """ jsd_list = [] x_list = single_point_list_2_list(x_list) data_list = pa...
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def test_SynthDefCompiler_basic_04_supriya_vs_bytes(py_synthdef_04): """ FreeSelf. """ # fmt: off test_compiled_synthdef = bytes( b'SCgf' b'\x00\x00\x00\x02' b'\x00\x01' b'\x04test' b'\x00\x00\x00\x02' b'C\xdc\x00\x00' ...
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def quaternion_from_matrix(matrix, isprecise=False): """Return quaternion from rotation matrix. If isprecise is True, the input matrix is assumed to be a precise rotation matrix and a faster algorithm is used. """ M = numpy.array(matrix, dtype=numpy.float64, copy=False)[:4, :4] if isprecise: ...
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def apply_backoff(strategy = None, max_tries = None, max_delay = None, catch_exceptions = None, on_failure = None, on_success = None): """Decorator that applies a backoff strategy to a decorated function/method. :param st...
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def make_a_tweet(Hash, Message, Reduced): """ Generate a valid tweet using the info passed in. """ tweet = Hash + ': ' + Message if Reduced: tweet += '…' return tweet
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def ldns_pkt_edns_udp_size(*args): """LDNS buffer.""" return _ldns.ldns_pkt_edns_udp_size(*args)
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def folder_delete(args, batch_dict=None): """ Read in the batch file, clean up the arguments, run the AzureDelete class for each folder :param args: type ArgumentParser arguments :param batch_dict: type Pandas dataframe.transpose().to_dict() """ # If batch_dict has not been supplied by the...
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def split_some_by_age( files_data: Mapping[str, np.ndarray], metadata ) -> Clients_X_y: """ Split the datum points (X,y) into three sets based on the age of the patients. Like `split_by_age`, except the first two sets are mixed. In effect, yes, this implies that the first value in age_lims i...
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def connect_all_nodes(nodes, sleep_time: float = 0.5): """Connect all nodes to each other. Args: nodes: A tuple of grid clients. """ for i in range(len(nodes)): for j in range(i): node_i, node_j = nodes[i], nodes[j] node_i.connect_grid_node(node_j, sleep_time=sle...
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def _get_size(obj, seen=None): """ Recursively find the actual size of an object, in bytes. Taken as-is (with tweaked function name) from https://github.com/bosswissam/pysize. """ size = sys.getsizeof(obj) if seen is None: seen = set() obj_id = id(obj) if obj_id in seen: ...
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def search_with_id(student_id): """ Obtain the username for a user with a given Student ID number (if server is tied into WPI network). :param student_id: Student ID number to use in the search :return: The user's network username """ try: username = os.popen('id +' + str(student_id) + ...
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async def fetch_confirmed_proposals(request, next_id): """Get confirmed proposals for a user, by their next_id.""" log_request(request) head_block = await get_request_block(request) start, limit = get_request_paging_info(request) conn = await create_connection() proposals = await proposals_query...
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def main_call_twitter_api(start_dates, bearer_token): """ This adds one day at the time, for 6 days, and save the returned API responses into a json format. Where each json file is a day Parameters ---------- start_dates : list A list of dates that have not been utilised in the ...
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def get_first_transcript_name(fasta_file): """Return the first FASTA sequence from the given FASTA file. Keyword arguments: fasta_file -- FASTA format file of the transcriptome """ with open_pysam_file(fname=fasta_file, ftype='fasta') as f: transcript_name = f.references[0] return tran...
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