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def test_caret_cmd(vim_bot, text, cmd_list, cursor_pos): """Test ^ command.""" _, _, editor, vim, qtbot = vim_bot editor.set_text(text) cmd_line = vim.get_focus_widget() for cmd in cmd_list: qtbot.keyClicks(cmd_line, cmd) assert cmd_line.text() == "" assert editor.textCursor().posi...
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def clean_dfg_based_on_noise_thresh(dfg, activities, noise_threshold, parameters=None): """ Clean Directly-Follows graph based on noise threshold Parameters ---------- dfg Directly-Follows graph activities Activities in the DFG graph noise_threshold Noise threshold ...
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def configure_app(config): """ Fetch configuration. :param config: Config object. """ app.config.from_object(config) CORS(app, resources={r"/*": {"origins": "*"}}, support_credentials=True)
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def post_form(lti): # pylint: disable=unused-argument, """ Access route with 'initial' request. :param lti: `lti` object :return: string "hi" """ return "hi"
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def cached_accessor(func_or_att): """Decorated function checks in-memory cache and disc cache for att first""" if callable(func_or_att): #allows decorator to be called without arguments att = func_or_att.__name__ return cached_accessor(func_or_att.__name__)(func_or_att) att = func_or_att ...
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def test_models_file(tmp_path): """ GIVEN specification stored in a YAML file WHEN init_yaml is called with the file and a models file path THEN the models are written to the models file. """ # pylint: disable=import-error,import-outside-toplevel # Generate spec file directory = tmp_path...
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def function_parts(subdir='./'): """ Parse the gsw m-files in a given subdirectory. Returns a list of parts: function base name, arguments, inputs, and the help lines with a section index dictionary. """ d = os.path.join(mfiledir, subdir) mfilelist = glob.glob(os.path.join(d, '*.m')) p...
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def make_graph(): """Convert the data to a BEL graph.""" if not os.path.exists(DATA_PATH): download_data() df = extract_data() return _make_graph(df)
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def write_tf_records(args): """Run TFRecord writer with given arguments.""" image_size = None if args.image_size is not None: image_size = parse_image_size(args.image_size) writer = a2d2.data_loader.A2D2TFRecordWriter(args.output, os.path.join(args.datadir, "class_list.json"), image_size) wr...
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def find_valid_background_scan_segments( N2_CVs, maximum_scanrate=0.011, scan_length=1950, segment_key="Segment #" ) -> List[int]: """checks if the data possibly contains a N2 background scan""" # finder_warning = None if not isinstance(N2_CVs, pd.DataFrame): # optional warning for TypeError ...
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def __typePrinterLoc(arg): """ Shorthand for printing all elements of locals() or globals() """ for elem in arg: __typePrinter(arg[elem], name=elem)
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def api_root(request, format=None): """ GET: Display all available urls. Since some urls have specific permissions, you might not be able to access them all. """ apis = PUBLIC_APIS(request, format) if request.user.is_staff: apis += PROTECTED_APIS(request, format) return Res...
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def get_gas_from_etherscan(key: str, verbose: bool = False) -> Tuple[int, int, int]: """ Fetch gas from Etherscan API """ r = requests.get('https://api.etherscan.io/api', params={'module': 'gastracker', 'action': 'gasoracle', ...
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def bit(value, position, length=1): """ Return bit of number value at position Position starts from 0 (LSB) :param value: :param position: :param length: :return: """ binary = bin(value)[2:] size = len(binary) - 1 if position > size: return 0 else: return ...
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def sidereal_lunar_longitude(tee): """Return sidereal lunar longitude at moment, tee.""" return mod(lunar_longitude(tee) - precession(tee) + SIDEREAL_START, 360)
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def create_view_event_from_tensor_basic_info(tensors_info): """ Create view event reply according to tensor names. Args: tensors_info (list[TensorBasicInfo]): The list of TensorBasicInfo. Each element has keys: `full_name`, `node_type`, `iter`. Returns: EventReply, the even...
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def diff_template(page, label=None): """ Return a Template:Diff2 string for the given Page. """ if label is None: label = page.title() return f"{{{{Diff2|{page.latest_revision_id}|{label}}}}}"
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def is_builtin(func): """Return true if the function is a DGL builtin function.""" return isinstance(func, fn.BuiltinFunction)
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def compute_sun_angle( position, pose, utc_datetime, sensor_orientation, ): """ compute the sun angle using pysolar functions""" altitude = 0 azimuth = 0 import warnings with warnings.catch_warnings(): # Ignore pysolar leap seconds offset warning warnings.simplefilter("ignore...
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def find_tuple_with_max_ncp(base, T, key, T_max_vals, T_min_vals): """ Scan through the whole table T, and find the i-th tuple that maximizes NCP(base, i). Parameters ---------- :param base: list of int Tuple to compare T's tuples against :param key: T the table :param...
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def make_dataset_name(name): """Dataset name contains "letters, numbers, -, _" only, any other content will be replaced with "-" """ def may_replace(c): if re.match("\w", c) is None: if c == '-': return c else: return "_" else: ...
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def averageOfNumbers(): """ averageOfNumbers Outputs the average of a series of numbers entered by the user. returns: The average of the numbers input by the user. """ numbers = [] amount_of_numbers = input("How many numbers do you wish to input? ") for x in range(1, int(amount...
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def process_covid_ctset_data(covid_ctset_meta_csv, covid_ctset_dir, output_dir): """Processes slices for all patients in the given COVID-CTSet CSV file""" filenames = [] classes = [] with open(covid_ctset_meta_csv, 'r') as f: reader = list(csv.DictReader(f, delimiter=',', quotechar='|')) ...
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def list_command_invocations(CommandId=None, InstanceId=None, MaxResults=None, NextToken=None, Filters=None, Details=None): """ An invocation is copy of a command sent to a specific instance. A command can apply to one or more instances. A command invocation applies to one instance. For example, if a user execu...
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def validate(xmlfile=None, type='request'): """ :type xmlfile: str """ if type not in ['request', 'response', 'cixml']: print('Invalid xml document type') sys.exit() else: schema = xmlschema.XMLSchema('{}{}.xsd'.format(SCHEMAS_FOLDER, type)) return schema.is_valid(xm...
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def pinsage_sample(graph, nodes, samples, top_k=10, proba=0.5, norm_bais=1.0, ignore_edges=set()): """Implement of graphsage sample. Reference paper: . Args: graph: A pgl graph instanc...
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def nbytes(obj, pprint=False): """ return the number of bytes of the object, which includes size of nested structures Parameters ---------- obj: object object to find the size of pprint: bool, optional (default=False) if set, returns the result after calling pretty_size_print ...
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def s2m_comrelid(request, s, sattr, m, mattr): """ """ if mattr != 'relation' or sattr != 'commentRelationId': raise RuntimeError, "s2m_comrelid is confused by %s and %s" % (sattr, mattr) if sattr in s: if isinstance(s[sattr], int): m.relation = Relation.objects.get(id=s[sattr]) elif re.match(r'^\d+...
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def calc_entropy(data, base=2): """ Calculate the entropy of data. Using documentation from scipy.stats.entropy as the basis for this code (https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.entropy.html). :param data: Measure the entropy of this object :return: Calculated entropy ...
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def calbar(axl, calbar=None, axesoff=True, orient='left', unitNames=None, fontsize=11, weight='normal', font='Arial'): """ draw a calibration bar and label it. The calibration bar is defined as: [x0, y0, xlen, ylen] """ axl = _ax_tolist(axl) # if type(axl) is not list: # axl = [a...
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def singledispatch_method(func): """Singledispatch on second argument, i.e. the one that isn't `self`.""" dispatcher = functools.singledispatch(func) def wrapper(*args, **kw): return dispatcher.dispatch(args[1].__class__)(*args, **kw) wrapper.register = dispatcher.register functools.update...
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def set_slops_from_read_orientation(slop, tpl_reads_orientation, cipos, ciend, buffer=0): # TODO: from Hardcoded to Dynamic Variable for buffer if requested """ set the slop boundaries according to the svtype and the reads orientation fro that svtype :param slop: minimum slop value :param tpl_reads_ori...
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def authenticate_user_registration(some_function): """ Decorator for functions (pages) that require a user to provide identification. Returns 403 (forbidden) or 401 (depending on beiwe-api-version) if the identifying info (username, password, device ID) are invalid. In any function wrapped with thi...
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def delete_group_keywords(session, group_name, group_keywords, priority=None): """ Function to delete a list of keyword of a group. Parameters ---------- session : sqlalchemy.orm.session.Session SQL Alchemy session group_name : str group name in the database group_keywords :...
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def getValidPaths(author_collabs, year): """ selects the neighbours with valid paths returns a list where each result is a tuple of author name, collaborations < year """ valid_neighbours = list() for n in author_collabs: valid_collabs = list() for c in author_collabs[n]: ...
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def _Tokenize(template_str, meta_left, meta_right, whitespace): """Yields tokens, which are 2-tuples (TOKEN_TYPE, token_string).""" trimlen = len(meta_left) token_re = MakeTokenRegex(meta_left, meta_right) do_strip = (whitespace == 'strip-line') # Do this outside loop do_strip_part = False for line in te...
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def add_path(G, data, one_way): """ https://github.com/gboeing/osmnx/blob/master/osmnx/core.py Add a path to the graph. Parameters ---------- G : networkx multidigraph data : dict the attributes of the path one_way : bool if this path is one-way or if it is bi-directional...
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def plot_image( image: ArrayLike, imshow_kwargs: Optional[Dict] = None, text_kwargs: Optional[Dict] = None, **kwargs: Any, ) -> Tuple[plt.Figure, plt.Axes]: """ Plots given image. Parameters ---------- image Image to plot. imshow_kwargs Keyword arguments for the ...
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def check_pv_deleted(pv_name, created_objects): """ checks pv is deleted or not , if not deleted ,asserts""" if keep_objects: return count = 12 api_instance = client.CoreV1Api() while (count > 0): try: api_response = api_instance.read_persistent_volume( ...
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def get_same_pinyin(char): """ 取同音字 :param char: :return: """ return same_pinyin.get(char, set())
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def get_chart_params(title, output, show_legend=False): """Parse output type and output options and return related chart parameters. For example: returns filename if output_type is file or server it output_type is server Args: title (str): the title of your plot. output (str): selected ...
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def preprocess(img, net_input_height_size=368, stride=8, pad_value=(0, 0, 0), img_mean=(128, 128, 128), img_scale=1/256): """ Args: img: Returns: """ height, width, _ = img.shape scale = net_input_height_size / height scaled_img = cv2.resize(img, (0, 0), fx=scale,...
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def compute_DVARS(func_img, mean_img=None, mask=None, apply_mask=False): """Computes the DVARS for a given fMRI image.""" if mean_img is None: mean_img = np.mean(func_img, axis=3) if apply_mask: if mask is None: mask = mask_image(mean_img) mean_img[np.logical_not(mask)]...
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def count_unplayed_cards(r, progress): """Returns the number of cards which are not yet played, including cards which are unplayable because all those cards (or cards of a value below it) are already discarded""" n = 0 for suit in r.suits: n += 5 - progress[suit] return n
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def dump_raw_data(filename, data): """ Write the data into a raw format file. Big endian is always used. """ rawfile = open(filename,'wb') a = array.array('f') for o in data: a.fromlist(list(o)) if is_little_endian(): a.byteswap() a.tofile(rawfile) rawfile.close()
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async def test_lid_status(thermocycler: Thermocycler): """It should run open and close lid.""" await thermocycler.wait_next_poll() assert thermocycler.lid_status == "open" await thermocycler.close() assert thermocycler.lid_status == "closed" await thermocycler.open() assert thermocycler.li...
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def new_drop(pixels, values): """Generate a new particle at the top of the board""" # First, get a list of columns that haven't generated # a particle recently cols = [] for x in range(0, width): good_col = True for y in range(0, int(height * values['safe'])): if pixels[...
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def index(request): """View function for home page of site.""" # Render the HTML template index.html with the data in the context variable. return render( request, 'index.html', context = {}, )
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def find_start_time(arr, reps=1): """! A function to find when simulations reaches a steady state with respect to array, arr. @param arr: Array to find steady state in @param reps: repetitions of recursion @return: st Start time, the index of time array when the simulation first reaches a the s...
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def execute_sql(sql, model=Award, fetcher=fetchall_fetcher, read_only=True): """ Executes a sql query against a database. sql - Can be either a sql string statement or a psycopg2 Composable object (Identifier, Literal, SQL, etc). model - A Django model that represents a ...
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def calc_region(bbox, ratio, featmap_size=None): """Calculate a proportional bbox region. The bbox center are fixed and the new h' and w' is h * ratio and w * ratio. Args: bbox (Tensor): Bboxes to calculate regions, shape (n, 4) ratio (float): Ratio of the output region. featmap_si...
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def toFENhash(fen): """ Removes the two last parts of the FEN notation """ return ' '.join(fen.split(" ")[:-2])
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def certify(collaborator_name, silent, request_pkg=False, import_=False): """Sign/certify collaborator certificate key pair.""" from click import confirm from shutil import unpack_archive from shutil import make_archive, copy from glob import glob from os.path import basename, join, splitext ...
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def fill_properties(p): """Sets up some properties with various types""" p['prop_1'] = 1 p['prop_2'] = '1' p['prop_3'] = False p['prop_4'] = 3.14
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def test_implements() -> None: """Test the implements decorator.""" class BaseClass: def func(self) -> None: """Do nothing.""" def no_docstring(self) -> None: pass class CorrectImplementation(BaseClass): @implements(BaseClass) def func(self) -> None...
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def test_correlogram(): """ Test for correlogram function in the functions module. """ with pytest.raises(ValueError): fn.correlogram(signal=1) with pytest.raises(TypeError): fn.correlogram(signal='sa') with pytest.raises(TypeError): fn.correlogram(signal=1+3j) with ...
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def test_string_composed_filter_with_count(): """ Test count composed string filter. """ filter_string = '[sort[-title]] [count[2]]' filters = filter.compose_from_string(filter_string) found_tiddlers = filter.by_composition(filters, tiddlers) assert [tiddler.title for tiddler in found_tidd...
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def remap_lads(lad_name): """Some LADs of MSOA census data do not match the LAD geographies of the LAD population data """ if lad_name == 'E06000048': lad_mapped = 'E06000057' #Northumberland elif lad_name == 'E08000020': lad_mapped = 'E08000037' elif lad_name == 'E07000097': ...
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def generate_dummy_ip(): """ makes a random ip address as a string """ return str(randint(0,255)) + "." + str(randint(0,255)) + "." + str(randint(0,255)) + "." + str(randint(0,255))
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def _upload_and_get_command(boto3_factory, args, job_s3_folder, job_name, config, log): """ Get command by parsing args and config. The function will also perform an s3 upload, if needed. :param boto3_factory: initialized Boto3ClientFactory object :param args: input arguments :param job_s3_fold...
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def _root_broyden1_doc(): """ Options ------- nit : int, optional Number of iterations to make. If omitted (default), make as many as required to meet tolerances. disp : bool, optional Print status to stdout on every iteration. maxiter : int, optional Maximum numb...
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def get_cached(path: str, category: str=None) -> Union[str, dict, list]: """Get contents of a file. The file contents are cached in memory, and all subsequent calls to `get_cached()` with identical `path` & `category` arguments return cached contents rather than reading the file on disk. Sho...
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def asbytes(s: Literal["testdouble"]): """ usage.scipy: 1 """ ...
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def get_paying_proxy_contract(w3: Web3, address=None): """ Get Paying Proxy Contract. This should be used just for contract creation/changing master_copy If you want to call Safe methods you should use `get_safe_contract` with the Proxy address, so you can access every method of the Safe :param w3: ...
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def search_motif_positions_debug(sequence, motif): """ Search a sequence for a given motif (as regex), and return position as list. Return False if the motif is absent from the sequence. """ print("Found motifs: %s" % regex.findall(r"%s" % motif, sequence)) positions = [m.start() + 1 for m in ...
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def validate(detector, val_data, metric): """Test on validation dataset.""" metric.reset() for img, label in val_data: # scores, bboxes = detector.detect(img) scores, bboxes = detector.ms_detect(img) metric.update(bboxes, scores, label) return metric.get()
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def save_yaml(outdir, fname, data): """ Save data as '.yaml' file. Parameters: ----------- outdir : str Directory to save data. fname : str Filename for output yaml. data : dict Data to save to yaml. """ filepath = os.path.join(outdir, fname) if not os.p...
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def calculate_EcefPoints(lats, longs): """ Construct a numpy array of EcefPoints from 2 arrays containing Latitudes and Longitudes. Note: lats and longs must be of equal lengths. Parameters ---------- lats: float array An array of Latitudes in [degrees]. longs: float array ...
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def compute_flow_map(u, v, gran=8): """ Plot optical flow map """ flow_map = np.zeros(u.shape) for y in range(flow_map.shape[0]): for x in range(flow_map.shape[1]): if y % gran == 0 and x % gran == 0: dx = 2 * int(u[y, x]) dy = 2 * int(v[y, x]) ...
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def brand_usage(number_of_brand_purchasers, total_purchasers): """Returns the percentage of brand usage for a period. Args: number_of_brand_purchasers (int): Total number of unique purchasers of a brand in a period. total_purchasers (int): Total unique purchasers in a period. Returns: ...
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def sim_walks(num_steps, num_trials, d_class): """Assumes num_steps an int >= 0, num_trials an int > 0, d_class a subclass of Drunk Simulates num_trials walks of num_steps steps each. Returns a list of the final distances for each trial""" Homer = d_class() origin = Location(0, 0) ...
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def launch(): """ Loads all of the cogs and starts the bot with the discord application. """ print() print("-------------------------------") print("Starting Analitica Discord Bot.") print("-------------------------------") # Load all the cogs from the files in the cogs folder on startu...
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def colormaps_path(): """Returns the path to user-defined colormaps""" return os.path.join(user_path(), "colormaps")
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def init_processes(fn): """ Initialize the distributed environment. """ print(f"Running rank {RANK} of {SIZE} on {HOSTNAME}") fn()
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def _construct_request_parameters(args: dict, keys: list, params={}): """A helper function to add the keys arguments to the dict parameters""" parameters = {} if params is not None: for p in params: parameters[p] = params[p] for (arg_field, filter_field) in keys: value = ar...
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def __run_query_table(context, client, sql: String) -> Optional[DataFrame]: """ Execute an SQL :param context: execution context :param sql: the SQL select query to execute :return: panda DataFrame or None :rtype: panda.DataFrame """ df = None close_down = client is None if clos...
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def install_enterprise_cli_package(): """Install `dcos-enterprise-cli` package. It is required by the `dcos security` command to create secrets, manage service accounts etc. """ print('Installing dcos-enterprise-cli package') stdout, stderr, return_code = shakedown.run_dcos_command('package insta...
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def add_parts_json(ibs, annot_uuid_list, part_bbox_list, part_theta_list, **kwargs): """ REST: Method: POST URL: /api/part/json/ Ignore: sudo pip install boto Args: annot_uuid_list (list of str) : list of annot UUIDs to be used in IBEIS IA part_uuid_list (list o...
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def haskell_nixpkgs_packageset(name, base_attribute_path, repositories = {}, **kwargs): """Import all the available haskell packages. The arguments are the same as the arguments of ``nixpkgs_package``, except for the ``base_attribute_path`` which should point to an `haskellPackages` set in the nix expre...
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def single_re_sub_empty_test(): """A function without arguments, needed for timeit. NB: uses global variable text to solve the argument problem""" return single_re_sub_empty(text, repl_chars)
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def A_STAR(global_map, start, end, Type = '8c',e = 1, heuristic = 'eu' ): """ Implements A* Algorithm for the Given Grid Map Arguments: global_map - np.array() start - start location [x,y] end - end location [x,y] Type - Type of Neibhours ('8c' or '4c') e - Heurestic Factor heuristic...
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def test_missing_image(): """ Confirm that we get a -1 result for a missing image. """ image_data = CACHE.get('missing') assert image_data == -1
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def main(argv): """Builds, trains, and evaluates the model.""" args = parser.parse_args(argv[1:]) (train_x,train_y), (test_x, test_y) = automobile_data.load_data() train_y /= args.price_norm_factor test_y /= args.price_norm_factor # Provide the training input dataset. train_input_fn = automobile_data.m...
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def resetOptions(): """ Reset options to their default values. """ global options defaultOptions = { 'inputEncoding' : 'utf-8', # default input encoding for strings 'outputEncoding' : 'utf-8', # default output encoding 'substituteChar' : '?', # use to substitute unrecognised charact...
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def test_callback_inheritance(): """Check inheritance of dispatcher callbacks. * Inheriting from a dispatcher gives access to its callbacks. * Inherited callbacks can be overloaded. * Overloading a callback doesn't affect the base dispatcher. """ base = Base() spec = Specialized() keys...
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def create_templates(filename): """Create templates with the service.""" data_to_use = _load_json(filename) service = current_records_marc21.templates_service templates = [] for data in data_to_use: template = service.create(data=data["values"], name=data["name"]) templates.append(t...
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def test_approvals_fp(): """Verify that FP tags get transformed, but only if they match a certain string""" with XMLBuilder("PART") as ctx: ctx.APPRO(_control_number('1111-2222')) ctx.FP("Something else") ctx.FP(_control_number('2222-4444')) ctx.P(_control_number('3333-6666')...
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def coherence_limit(nQ=2, T1_list=None, T2_list=None, gatelen=0.1): """ The error per gate (1-average_gate_fidelity) given by the T1,T2 limit. Args: nQ: number of qubits (1 and 2 supported). T1_list: list of T1's (Q1,...,Qn). T2_list: list of T2's (as measured, ...
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def connection_from_list_slice( list_slice: Sequence, args: ConnectionArguments = None, connection_type: ConnectionConstructor = Connection, edge_type: EdgeConstructor = Edge, pageinfo_type: PageInfoConstructor = PageInfo, slice_start=0, list_length=0, list_slice_length=None, ) -> Connec...
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def logp_model(residuals, params_nodes, Pk, Variance, distribution_parameters): """returns -2log p of residuals""" Pk_double = np.concatenate((Pk, Pk)) return 2*np.sum(np.square(params_nodes) / Pk_double) + negative_2loglikelihood(residuals, Variance, distribution_parameters)
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def _loadParamFromFile(config, section, paramName): """ read param from file validate it and load to to global conf dict """ # Get paramName from answer file value = config.get(section, paramName) # Validate param value using its validation func param = controller.getParamByName(pa...
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def plotcross(a,val=[0,0,0],hard=None,sum=True) : """ plot cross sections of input 3D grid of synthetic spectra Args: a : input HDU with synthetic spectral grid val : 3 ([M/H], logg, Teff) grid indices to use when varying other dimensions (default=[0,0,0]) """ dim=a.data.shap...
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def nonConv(wSpace, pts, val= -100, vis= False, img_name= 'img'): """This function takes in list of convex shapes with there points list for each shape and the union of these shapes will give us the desired nonConvex shape""" convPts = [] ctr=0 for conv in pts: ctr+=1 wSpace1 = convPolygon(wSpace, conv, vis=...
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def restart_run(db) -> list: """When restarting a hash run, identify which files need to be skipped from the database Args: db (TinyDB database): A TinyDB database objects containing filepaths and hashes of the search so far """ logger.info("Restarting hashing process") retu...
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def votes_per_month(values: Dict[str, List[str] | Tuple[str]]) -> Dict[str, Dict[str, int]]: """ :param values: a dictionary formatted like: {month: list of votes} :returns: dictionary every person for every month """ all_persons = set([person.lower().replace(" ", "") for element in values.values() ...
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def CalculationElement(curr_doc, elementlist): """ :param elementlist: list of all elements :return: all_functions: [[functions of elements 1][functions of element 2]...[functions of element n]] --> order of functions: N, u, Q, M, w, phi x: Symbol to plot over l_list: lis...
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def adjacency2digraph( adj_matrix: np.ndarray, similar_this_dgraph: nx.DiGraph = None) -> nx.DiGraph: """Converts the adjacency matrix to directed graph. If similar_this_graph is given, then the final directed graph has the same node labeling as the given graph has. Using dgraph2adjacen...
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def make_list_equal(lhs: list, rhs: list, pad_element: str = '') -> None: """ Make two vector of string equation in length by padding with `pad_element` Parameters ---------- lhs : list 2 vectors of string to be made equal in length rhs : list 2 vectors of string to be made equal in...
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def test_initialization(pro): """ Ertu hress? """ assert pro.comm.project.inversion_root == pro.root_folder assert os.path.exists( os.path.join(pro.comm.project.inversion_root, "DOCUMENTATION") ) assert os.path.exists( os.path.join(pro.comm.project.inversion_root, "DOCUMENTAT...
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def move_cursor(move): """Return move value for cursor.""" return { 'left': -1, 'right': 1, }[move]
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