Download data_loading.py from birgermoell/medical-diffusion-sam: direct link, hf CLI and curl.
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- Download file 1.91 kB
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https://huggingface.co/datasets/birgermoell/medical-diffusion-sam/resolve/main/data_loading.py
- Command line
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hf download hf://datasets/birgermoell/medical-diffusion-sam/data_loading.py
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curl -L -o data_loading.py https://huggingface.co/datasets/birgermoell/medical-diffusion-sam/resolve/main/data_loading.py
1.91 kB
| import os | |
| import csv | |
| import shutil | |
| import json | |
| from sam_api import segment_image_from_url | |
| import requests | |
| def process_data(data, output_csv, base_image_folder, segmented_image_folder): | |
| # Create the folders for base and segmented images if they don't exist | |
| os.makedirs(base_image_folder, exist_ok=True) | |
| os.makedirs(segmented_image_folder, exist_ok=True) | |
| # Open the CSV file and write the header | |
| with open(output_csv, 'w', newline='') as csvfile: | |
| fieldnames = ['base_image', 'segmented_image', 'description'] | |
| writer = csv.DictWriter(csvfile, fieldnames=fieldnames) | |
| writer.writeheader() | |
| # Iterate through the dataset | |
| for row in data['rows']: | |
| image_url = row['row']['image']['src'] | |
| report = row['row']['report'].strip("b'") | |
| base_image_file = os.path.join(base_image_folder, f"base_image_{row['row_idx']}.jpg") | |
| segmented_image_file = os.path.join(segmented_image_folder, f"segmented_image_{row['row_idx']}.png") | |
| # Download and save the base image | |
| response = requests.get(image_url, stream=True) | |
| with open(base_image_file, 'wb') as out_file: | |
| shutil.copyfileobj(response.raw, out_file) | |
| del response | |
| # Segment the image and save it | |
| _ = segment_image_from_url(image_url) | |
| shutil.move('segmented_image.png', segmented_image_file) | |
| # Write the data to the CSV file | |
| writer.writerow({'base_image': base_image_file, 'segmented_image': segmented_image_file, 'description': report}) | |
| # Example usage | |
| # Load the data from the JSON file | |
| with open('data.json', 'r') as json_file: | |
| data = json.load(json_file) | |
| output_csv = 'output.csv' | |
| base_image_folder = 'base_images' | |
| segmented_image_folder = 'segmented_images' | |
| process_data(data, output_csv, base_image_folder, segmented_image_folder) |