Upload README.md with huggingface_hub
Browse files
README.md
CHANGED
|
@@ -1,58 +1,43 @@
|
|
| 1 |
---
|
| 2 |
license: cc-by-4.0
|
| 3 |
-
task_categories:
|
| 4 |
-
- image-classification
|
| 5 |
-
- image-segmentation
|
| 6 |
tags:
|
| 7 |
- electron-microscopy
|
| 8 |
- 4D-STEM
|
| 9 |
- materials-science
|
| 10 |
- quantem
|
| 11 |
pretty_name: quantem-data
|
| 12 |
-
size_categories:
|
| 13 |
-
- 1K<n<10K
|
| 14 |
---
|
| 15 |
|
| 16 |
# quantem-data
|
| 17 |
|
| 18 |
-
|
| 19 |
|
| 20 |
-
|
| 21 |
|
| 22 |
-
``
|
| 23 |
-
|
| 24 |
-
```
|
| 25 |
|
| 26 |
-
##
|
| 27 |
|
| 28 |
```python
|
| 29 |
-
from quantem.
|
| 30 |
from quantem.widget import Show4DSTEM, Show2D
|
|
|
|
| 31 |
|
| 32 |
-
# 4D-STEM
|
| 33 |
-
|
|
|
|
|
|
|
| 34 |
|
| 35 |
-
#
|
| 36 |
-
Show2D(
|
| 37 |
```
|
| 38 |
|
| 39 |
-
|
| 40 |
-
|
| 41 |
-
| Folder | Data type | quantem.widget |
|
| 42 |
-
|--------|-----------|----------------|
|
| 43 |
-
| `4dstem/` | 4D-STEM diffraction | Show4DSTEM, Show4D |
|
| 44 |
-
| `hrtem/` | High-resolution TEM | Show2D, Mark2D |
|
| 45 |
-
| `eels/` | Electron energy loss | Show1D |
|
| 46 |
-
| `tomo/` | Tomography | Show3DVolume |
|
| 47 |
-
| `diffraction/` | Diffraction patterns | Show2D |
|
| 48 |
-
| `image/` | Virtual/derived images | Show2D, Mark2D |
|
| 49 |
-
| `complex/` | Ptychography | ShowComplex2D |
|
| 50 |
-
| `raw/` | Original instrument files | — |
|
| 51 |
-
|
| 52 |
-
## Metadata
|
| 53 |
|
| 54 |
-
|
| 55 |
|
| 56 |
-
|
|
|
|
| 57 |
|
| 58 |
-
|
|
|
|
| 1 |
---
|
| 2 |
license: cc-by-4.0
|
|
|
|
|
|
|
|
|
|
| 3 |
tags:
|
| 4 |
- electron-microscopy
|
| 5 |
- 4D-STEM
|
| 6 |
- materials-science
|
| 7 |
- quantem
|
| 8 |
pretty_name: quantem-data
|
|
|
|
|
|
|
| 9 |
---
|
| 10 |
|
| 11 |
# quantem-data
|
| 12 |
|
| 13 |
+
Reference electron-microscopy datasets for [quantem.live](https://github.com/bobleesj/quantem.live).
|
| 14 |
|
| 15 |
+
Two buckets:
|
| 16 |
|
| 17 |
+
- **`4dstem/`** — 4D-STEM acquisitions (one folder per dataset: Arina master + data chunks)
|
| 18 |
+
- **`haadf/`** — HAADF survey images
|
|
|
|
| 19 |
|
| 20 |
+
## Download with quantem.live
|
| 21 |
|
| 22 |
```python
|
| 23 |
+
from quantem.live import io
|
| 24 |
from quantem.widget import Show4DSTEM, Show2D
|
| 25 |
+
import torch
|
| 26 |
|
| 27 |
+
# 4D-STEM: download (cached after first time), bin to fit your GPU, browse
|
| 28 |
+
folder = io.download("gold_512") # -> 4dstem/gold_512/
|
| 29 |
+
data = io.load(io.discover_masters(folder)[0], det_bin=2)
|
| 30 |
+
Show4DSTEM(torch.from_dlpack(data.data))
|
| 31 |
|
| 32 |
+
# HAADF image
|
| 33 |
+
Show2D(io.read_image(io.download("gold_haadf"))) # -> haadf/gold_haadf.emd
|
| 34 |
```
|
| 35 |
|
| 36 |
+
From a terminal: `live data list` · `live data download gold_512`.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 37 |
|
| 38 |
+
## Current datasets
|
| 39 |
|
| 40 |
+
- `4dstem/`: gold_512, gold_30mrad1.3mx04, gold_30mrad1.3mx06, gold_30mrad1.3mx07, gold_30mrad1.3mx09
|
| 41 |
+
- `haadf/`: gold_haadf
|
| 42 |
|
| 43 |
+
Run `live data list` for the live set.
|