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# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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"import pydoc",
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"class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ... |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
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# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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"import unittest",
"def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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"from utils.start_cpp import start_cpp",
"numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}"
] |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
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"import gamma_cpp",
"import setProcName",
"import start_cpp",
"import make",
"import doc_gen",
"doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc... |
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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"import distutils.ccompiler",
"import distutils.dep_util",
"try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None",
" __default_compiler... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
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# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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] |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
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"doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc... |
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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"try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None",
" __default_compiler... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
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# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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] |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
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"import gamma_cpp",
"import setProcName",
"import start_cpp",
"import make",
"import doc_gen",
"doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc... |
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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"gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o... |
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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"import sys",
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"from distutils.core import setup, Extension",
"import distutils.ccompiler",
"import distutils.dep_util",
"try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None",
" __default_compiler... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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"import pydoc",
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#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
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# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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"def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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] |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
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"import gamma_cpp",
"import setProcName",
"import start_cpp",
"import make",
"import doc_gen",
"doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc... |
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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"gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o... |
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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"import sys",
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"from distutils.core import setup, Extension",
"import distutils.ccompiler",
"import distutils.dep_util",
"try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None",
" __default_compiler... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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"import pydoc",
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#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
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# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
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"import types",
"import marshal",
"import unittest",
"def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
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] |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
1,
0,
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"import cvarray",
"import mp_map",
"import prog_bar",
"import numpy_help_cpp",
"import python_obj_cpp",
"import matrix_cpp",
"import gamma_cpp",
"import setProcName",
"import start_cpp",
"import make",
"import doc_gen",
"doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc... |
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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"import unittest",
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"import math",
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"from scipy import weave",
"from utils.start_cpp import start_cpp",
"gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o... |
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
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"def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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1,
0,
0.2344,
0.0156,
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0.6... | [
"import sys",
"import os.path",
"import tempfile",
"import shutil",
"from distutils.core import setup, Extension",
"import distutils.ccompiler",
"import distutils.dep_util",
"try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None",
" __default_compiler... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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"import pydoc",
"import inspect",
"class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ... |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
1,
0,
0.3636,
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"from ctypes import *",
"def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
0,
0.1456,
0.0097,
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901,
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1,
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0,
0,
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],
[
1,
0,
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0.0097,
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0.... | [
"import multiprocessing as mp",
"import multiprocessing.synchronize # To make sure we have all the functionality.",
"import types",
"import marshal",
"import unittest",
"def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
0,
0.1923,
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[
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799,
4,
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0,
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0,
0,
1
]
] | [
"from utils.start_cpp import start_cpp",
"numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}"
] |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
1,
0,
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192,
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[
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1,
0,
0,
905,
0,
0
],
[
1,
0,
0.3214,
0.0179,
0,
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"import cvarray",
"import mp_map",
"import prog_bar",
"import numpy_help_cpp",
"import python_obj_cpp",
"import matrix_cpp",
"import gamma_cpp",
"import setProcName",
"import start_cpp",
"import make",
"import doc_gen",
"doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc... |
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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"import unittest",
"import random",
"import math",
"from scipy.special import gammaln, psi, polygamma",
"from scipy import weave",
"from utils.start_cpp import start_cpp",
"gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o... |
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
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"import inspect",
"import hashlib",
"def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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"import sys",
"import os.path",
"import tempfile",
"import shutil",
"from distutils.core import setup, Extension",
"import distutils.ccompiler",
"import distutils.dep_util",
"try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None",
" __default_compiler... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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"import pydoc",
"import inspect",
"class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ... |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
1,
0,
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"def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
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"import multiprocessing as mp",
"import multiprocessing.synchronize # To make sure we have all the functionality.",
"import types",
"import marshal",
"import unittest",
"def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
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"from utils.start_cpp import start_cpp",
"numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}"
] |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
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"import cvarray",
"import mp_map",
"import prog_bar",
"import numpy_help_cpp",
"import python_obj_cpp",
"import matrix_cpp",
"import gamma_cpp",
"import setProcName",
"import start_cpp",
"import make",
"import doc_gen",
"doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc... |
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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"import unittest",
"import random",
"import math",
"from scipy.special import gammaln, psi, polygamma",
"from scipy import weave",
"from utils.start_cpp import start_cpp",
"gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o... |
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
0,
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[
2,
0,
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0,
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"import inspect",
"import hashlib",
"def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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0,
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[
1,
0,
0.2344,
0.0156,
0,
0.6... | [
"import sys",
"import os.path",
"import tempfile",
"import shutil",
"from distutils.core import setup, Extension",
"import distutils.ccompiler",
"import distutils.dep_util",
"try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None",
" __default_compiler... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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0,
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"import pydoc",
"import inspect",
"class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ... |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
1,
0,
0.3636,
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[
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"from ctypes import *",
"def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
0,
0.1456,
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901,
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[
1,
0,
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"import multiprocessing as mp",
"import multiprocessing.synchronize # To make sure we have all the functionality.",
"import types",
"import marshal",
"import unittest",
"def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
0,
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799,
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] | [
"from utils.start_cpp import start_cpp",
"numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}"
] |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
1,
0,
0.2857,
0.0179,
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0,
192,
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192,
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0
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[
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1,
0,
0,
905,
0,
0
],
[
1,
0,
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0.0179,
0,
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"import cvarray",
"import mp_map",
"import prog_bar",
"import numpy_help_cpp",
"import python_obj_cpp",
"import matrix_cpp",
"import gamma_cpp",
"import setProcName",
"import start_cpp",
"import make",
"import doc_gen",
"doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc... |
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
1,
0,
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[
1,
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"import unittest",
"import random",
"import math",
"from scipy.special import gammaln, psi, polygamma",
"from scipy import weave",
"from utils.start_cpp import start_cpp",
"gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o... |
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
0,
0.5,
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],
[
2,
0,
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0,
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"import inspect",
"import hashlib",
"def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
1,
0,
0.2031,
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0,
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[
1,
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0,
0,
79,
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],
[
1,
0,
0.2344,
0.0156,
0,
0.6... | [
"import sys",
"import os.path",
"import tempfile",
"import shutil",
"from distutils.core import setup, Extension",
"import distutils.ccompiler",
"import distutils.dep_util",
"try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None",
" __default_compiler... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
1,
0,
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0,
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],
[
3,
0,
0.5439,
0.9171,
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0.6... | [
"import pydoc",
"import inspect",
"class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ... |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
1,
0,
0.3636,
0.0227,
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182,
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1,
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182,
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[
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0,
0,
0,
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9
],
[
8,
1,
0.4773,
0.0227,
1,
0,
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"from ctypes import *",
"def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
0,
0.1456,
0.0097,
0,
0.66,
0,
901,
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1,
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],
[
1,
0,
0.1553,
0.0097,
0,
0.66,
0.1111,
99,
0,
1,
0,
0,
99,
0,
0
],
[
1,
0,
0.1748,
0.0097,
0,
0.... | [
"import multiprocessing as mp",
"import multiprocessing.synchronize # To make sure we have all the functionality.",
"import types",
"import marshal",
"import unittest",
"def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
0,
0.1923,
0.0128,
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972,
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1,
0,
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972,
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[
14,
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0.7564,
0,
0.66,
1,
799,
4,
0,
0,
0,
0,
0,
1
]
] | [
"from utils.start_cpp import start_cpp",
"numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}"
] |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
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"import matrix_cpp",
"import gamma_cpp",
"import setProcName",
"import start_cpp",
"import make",
"import doc_gen",
"doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc... |
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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"gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o... |
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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"import sys",
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"from distutils.core import setup, Extension",
"import distutils.ccompiler",
"import distutils.dep_util",
"try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None",
" __default_compiler... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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"import pydoc",
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#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
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# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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"import multiprocessing as mp",
"import multiprocessing.synchronize # To make sure we have all the functionality.",
"import types",
"import marshal",
"import unittest",
"def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
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"numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}"
] |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
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0,
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"import cvarray",
"import mp_map",
"import prog_bar",
"import numpy_help_cpp",
"import python_obj_cpp",
"import matrix_cpp",
"import gamma_cpp",
"import setProcName",
"import start_cpp",
"import make",
"import doc_gen",
"doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc... |
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
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"import unittest",
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"import math",
"from scipy.special import gammaln, psi, polygamma",
"from scipy import weave",
"from utils.start_cpp import start_cpp",
"gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o... |
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
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[
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"import inspect",
"import hashlib",
"def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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0,
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79,
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[
1,
0,
0.2344,
0.0156,
0,
0.6... | [
"import sys",
"import os.path",
"import tempfile",
"import shutil",
"from distutils.core import setup, Extension",
"import distutils.ccompiler",
"import distutils.dep_util",
"try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None",
" __default_compiler... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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"import pydoc",
"import inspect",
"class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ... |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
1,
0,
0.3636,
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"from ctypes import *",
"def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
0,
0.1456,
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901,
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1,
0,
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"import multiprocessing as mp",
"import multiprocessing.synchronize # To make sure we have all the functionality.",
"import types",
"import marshal",
"import unittest",
"def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
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799,
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] | [
"from utils.start_cpp import start_cpp",
"numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}"
] |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
1,
0,
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192,
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0,
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],
[
1,
0,
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0,
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"import cvarray",
"import mp_map",
"import prog_bar",
"import numpy_help_cpp",
"import python_obj_cpp",
"import matrix_cpp",
"import gamma_cpp",
"import setProcName",
"import start_cpp",
"import make",
"import doc_gen",
"doc = doc_gen.DocGen('utils', 'Utilities/Miscellaneous', 'Library of misc... |
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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"import unittest",
"import random",
"import math",
"from scipy.special import gammaln, psi, polygamma",
"from scipy import weave",
"from utils.start_cpp import start_cpp",
"gamma_code = start_cpp() + \"\"\"\n#ifndef GAMMA_CODE\n#define GAMMA_CODE\n\n#include <cmath>\n\n// Returns the natural logarithm o... |
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
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"def start_cpp(hash_str = None):\n \"\"\"This method does two things - firstly it adds the correct line numbers to scipy.weave code (Good for debugging) and secondly it can optionaly inserts a hash code of some other code into the code. This latter feature is useful for work... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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0.0156,
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0.6... | [
"import sys",
"import os.path",
"import tempfile",
"import shutil",
"from distutils.core import setup, Extension",
"import distutils.ccompiler",
"import distutils.dep_util",
"try:\n __default_compiler = distutils.ccompiler.new_compiler()\nexcept:\n __default_compiler = None",
" __default_compiler... |
# Copyright (c) 2012, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of conditions and the follo... | [
[
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0,
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[
3,
0,
0.5439,
0.9171,
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"import pydoc",
"import inspect",
"class DocGen:\n \"\"\"A helper class that is used to generate documentation for the system. Outputs multiple formats simultaneously, specifically html for local reading with a webbrowser and the markup used by the wiki system on Google code.\"\"\"\n def __init__(self, name, ... |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2010, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyrig... | [
[
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8,
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"def setProcName(name):\n \"\"\"Sets the process name, linux only - useful for those programs where you might want to do a killall, but don't want to slaughter all the other python processes. Note that there are multiple mechanisms, and that the given new name can be shortened by differin... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
0,
0.1456,
0.0097,
0,
0.66,
0,
901,
0,
1,
0,
0,
901,
0,
0
],
[
1,
0,
0.1553,
0.0097,
0,
0.66,
0.1111,
99,
0,
1,
0,
0,
99,
0,
0
],
[
1,
0,
0.1748,
0.0097,
0,
0.... | [
"import multiprocessing as mp",
"import multiprocessing.synchronize # To make sure we have all the functionality.",
"import types",
"import marshal",
"import unittest",
"def repeat(x):\n \"\"\"A generator that repeats the input forever - can be used with the mp_map function to give data to a function tha... |
# -*- coding: utf-8 -*-
# Copyright (c) 2011, Tom SF Haines
# All rights reserved.
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright notice, this list of... | [
[
1,
0,
0.1923,
0.0128,
0,
0.66,
0,
972,
0,
1,
0,
0,
972,
0,
0
],
[
14,
0,
0.6282,
0.7564,
0,
0.66,
1,
799,
4,
0,
0,
0,
0,
0,
1
]
] | [
"from utils.start_cpp import start_cpp",
"numpy_util_code = start_cpp() + \"\"\"\n#ifndef NUMPY_UTIL_CODE\n#define NUMPY_UTIL_CODE\n\nfloat & Float1D(PyArrayObject * arr, int index = 0)\n{\n return *(float*)(arr->data + index*arr->strides[0]);\n}"
] |
# -*- coding: utf-8 -*-
# Copyright 2011 Tom SF Haines
# Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agre... | [
[
1,
0,
0.0568,
0.0044,
0,
0.66,
0,
526,
0,
1,
0,
0,
526,
0,
0
],
[
1,
0,
0.0611,
0.0044,
0,
0.66,
0.1429,
954,
0,
1,
0,
0,
954,
0,
0
],
[
1,
0,
0.0655,
0.0044,
0,
... | [
"import math",
"import numpy",
"import numpy.linalg",
"import numpy.random",
"from wishart import Wishart",
"from gaussian import Gaussian",
"from student_t import StudentT",
"class GaussianPrior:\n \"\"\"The conjugate prior for the multivariate Gaussian distribution. Maintains the 4 values and suppo... |
#! /usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright 2011 Tom SF Haines
# Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by... | [
[
1,
0,
0.4667,
0.0333,
0,
0.66,
0,
884,
0,
1,
0,
0,
884,
0,
0
],
[
1,
0,
0.5333,
0.0333,
0,
0.66,
0.125,
970,
0,
1,
0,
0,
970,
0,
0
],
[
14,
0,
0.7,
0.0333,
0,
0.6... | [
"import gcp",
"from utils import doc_gen",
"doc = doc_gen.DocGen('gcp', 'Gaussian Conjugate Prior', 'Library of distributions focused on the Gaussian and its conjugate prior')",
"doc.addFile('readme.txt', 'Overview')",
"doc.addClass(gcp.Gaussian)",
"doc.addClass(gcp.GaussianInc)",
"doc.addClass(gcp.Wish... |
# -*- coding: utf-8 -*-
# Copyright 2011 Tom SF Haines
# Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agre... | [
[
1,
0,
0.7647,
0.0588,
0,
0.66,
0,
78,
0,
1,
0,
0,
78,
0,
0
],
[
1,
0,
0.8235,
0.0588,
0,
0.66,
0.25,
680,
0,
1,
0,
0,
680,
0,
0
],
[
1,
0,
0.8824,
0.0588,
0,
0.66... | [
"from gaussian import Gaussian",
"from gaussian_inc import GaussianInc",
"from wishart import Wishart",
"from student_t import StudentT",
"from gaussian_prior import GaussianPrior"
] |
# -*- coding: utf-8 -*-
# Copyright 2011 Tom SF Haines
# Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agre... | [
[
1,
0,
0.1287,
0.0099,
0,
0.66,
0,
526,
0,
1,
0,
0,
526,
0,
0
],
[
1,
0,
0.1386,
0.0099,
0,
0.66,
0.25,
954,
0,
1,
0,
0,
954,
0,
0
],
[
1,
0,
0.1485,
0.0099,
0,
0.... | [
"import math",
"import numpy",
"import numpy.linalg",
"import numpy.random",
"class Gaussian:\n \"\"\"A basic multivariate Gaussian class. Has caching to avoid duplicate calculation.\"\"\"\n def __init__(self, dims):\n \"\"\"dims is the number of dimensions. Initialises with mu at the origin and the id... |
#! /usr/bin/env python
# Copyright 2011 Tom SF Haines
# Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agree... | [
[
1,
0,
0.52,
0.04,
0,
0.66,
0,
712,
0,
1,
0,
0,
712,
0,
0
],
[
1,
0,
0.6,
0.04,
0,
0.66,
0.25,
970,
0,
1,
0,
0,
970,
0,
0
],
[
14,
0,
0.8,
0.04,
0,
0.66,
0.5,
... | [
"import dpgmm",
"from utils import doc_gen",
"doc = doc_gen.DocGen('dpgmm', 'Dirichlet Process Gaussian Mixture Model', 'Dynamically resizing Gaussian mixture model')",
"doc.addFile('readme.txt', 'Overview')",
"doc.addClass(dpgmm.DPGMM)"
] |
# Copyright 2011 Tom SF Haines
# Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, softwar... | [
[
1,
0,
0.0821,
0.0075,
0,
0.66,
0,
193,
0,
1,
0,
0,
193,
0,
0
],
[
1,
0,
0.0896,
0.0075,
0,
0.66,
0.2,
954,
0,
1,
0,
0,
954,
0,
0
],
[
1,
0,
0.097,
0.0075,
0,
0.66... | [
"from collections import defaultdict",
"import numpy",
"import numpy.random",
"from kde_inc.kde_inc import KDE_INC",
"from prob_cat import ProbCat",
"class ClassifyBagKDE(ProbCat):\n \"\"\"This is the same as ClassifyKDE, except it has multiple instances of KDE_INC for each class. It uses bagging with a ... |
# -*- coding: utf-8 -*-
# Copyright 2011 Tom SF Haines
# Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agre... | [
[
1,
0,
0.3137,
0.0196,
0,
0.66,
0,
977,
0,
1,
0,
0,
977,
0,
0
],
[
1,
0,
0.3333,
0.0196,
0,
0.66,
0.2,
225,
0,
1,
0,
0,
225,
0,
0
],
[
1,
0,
0.3529,
0.0196,
0,
0.6... | [
"from document import Document",
"from topic import Topic",
"from corpus import Corpus",
"from solve_shared import Params",
"try:\n from solve_weave_mp import fit, fitDoc\n __fitter = 'multiprocess weave'\nexcept:\n try:\n from solve_weave import fit, fitDoc\n __fitter = 'weave'\n except:",
" f... |
# -*- coding: utf-8 -*-
# Copyright 2011 Tom SF Haines
# Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agre... | [
[
1,
0,
0.0526,
0.004,
0,
0.66,
0,
954,
0,
1,
0,
0,
954,
0,
0
],
[
1,
0,
0.0567,
0.004,
0,
0.66,
0.0909,
181,
0,
1,
0,
0,
181,
0,
0
],
[
1,
0,
0.0607,
0.004,
0,
0.6... | [
"import numpy",
"import numpy.random",
"import scipy",
"import solve_shared as shared",
"def iniGibbs(state):\n \"\"\"Does the initialisation gibbs pass, where it incrimentally sets the starting topic assignments based on the documents so far fitted. Builds the count matrices/vectors in the state at the sa... |
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