Datasets:
Download publication.json from cBioPortal/publicDatabase: direct link, hf CLI and curl.
- Browser
- Download file 14.9 kB
-
https://huggingface.co/datasets/cBioPortal/publicDatabase/resolve/main/publication.json
- Command line
-
hf download hf://datasets/cBioPortal/publicDatabase/publication.json
-
curl -L -o publication.json https://huggingface.co/datasets/cBioPortal/publicDatabase/resolve/main/publication.json
14.9 kB
| { | |
| "clickhouse_version": "26.6.1.2455", | |
| "dump_dir": "dump_2026_11_08_v3_1_0", | |
| "files": [ | |
| { | |
| "path": "data/allele_specific_copy_number.parquet", | |
| "sha256": "73bf51ff28801270d1750c668954310a6985799c2b9511398b4faab68cee7cb2", | |
| "size": 8953941, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/allele_specific_copy_number.parquet" | |
| }, | |
| { | |
| "path": "data/alteration_driver_annotation.parquet", | |
| "sha256": "a70143331203826efda4a5aec53211cdfc32b5008dd4964e3500d5e5e6868552", | |
| "size": 201622, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/alteration_driver_annotation.parquet" | |
| }, | |
| { | |
| "path": "data/cancer_study.parquet", | |
| "sha256": "2d8a03ca9a2b12cf877252f8656bddddec8022a84981f1f746aa7f6aff74e901", | |
| "size": 56692, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/cancer_study.parquet" | |
| }, | |
| { | |
| "path": "data/cancer_study_tags.parquet", | |
| "sha256": "e9c9613e516638ff88d6968b27577665c7c2fa9f5deffb0ebc1581de2539a06e", | |
| "size": 155, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/cancer_study_tags.parquet" | |
| }, | |
| { | |
| "path": "data/cbioportal_sequence_state.parquet", | |
| "sha256": "94d8fdf121f2feb88e5a0ec31485d207b8066dd120c6547808d5b47fff7fcbd7", | |
| "size": 933, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/cbioportal_sequence_state.parquet" | |
| }, | |
| { | |
| "path": "data/clinical_attribute_meta.parquet", | |
| "sha256": "064fcff7be1484d9a2ba6848a30ba863e0810042bf656d935f753887aacb300a", | |
| "size": 219613, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/clinical_attribute_meta.parquet" | |
| }, | |
| { | |
| "path": "data/clinical_data_derived.parquet", | |
| "sha256": "94ebcdfb274ee2ab80a8d7a8a9c7073a4588f6e96b396ddf9765164295a3aa81", | |
| "size": 69328128, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/clinical_data_derived.parquet" | |
| }, | |
| { | |
| "path": "data/clinical_event.parquet", | |
| "sha256": "75cbb6d348ddde634008eab625c2f41f90c47a8cd1ade9e1b1064b5ca83d6601", | |
| "size": 11051484, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/clinical_event.parquet" | |
| }, | |
| { | |
| "path": "data/clinical_event_data.parquet", | |
| "sha256": "8b354063a66ee93766b9ffb6afab144700b2dba53f8cfc368fbd8b7d318eddc3", | |
| "size": 17038714, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/clinical_event_data.parquet" | |
| }, | |
| { | |
| "path": "data/clinical_event_data_derived.parquet", | |
| "sha256": "86610f85b44a34a3e6915441ba39c2925ca28ed7735ab737d499e2ab2a72076c", | |
| "size": 26257030, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/clinical_event_data_derived.parquet" | |
| }, | |
| { | |
| "path": "data/clinical_event_derived.parquet", | |
| "sha256": "1db791b121cdde2c07d5fde46580c9100ef340dfb080a74923bc53a1b94c6f3c", | |
| "size": 13013658, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/clinical_event_derived.parquet" | |
| }, | |
| { | |
| "path": "data/clinical_patient.parquet", | |
| "sha256": "f3069929c1646f741998dab9275f2f218f6633cbdfe714172ca142ecd4db01e8", | |
| "size": 8433916, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/clinical_patient.parquet" | |
| }, | |
| { | |
| "path": "data/clinical_sample.parquet", | |
| "sha256": "b20edcfa6ccd42cbdec054c47d3a7c746bb16704328a5c2efcce6a1910cf42c0", | |
| "size": 12402644, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/clinical_sample.parquet" | |
| }, | |
| { | |
| "path": "data/cna_event.parquet", | |
| "sha256": "75f30148badc0a0b862977820bbeb701faf999a409073a09e28a72d0b2f4aa2e", | |
| "size": 541720, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/cna_event.parquet" | |
| }, | |
| { | |
| "path": "data/copy_number_seg.parquet", | |
| "sha256": "4115b773cc32afd8d642782e277e068719e3599526a8bc5e8c656a4d390bc96c", | |
| "size": 394238500, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/copy_number_seg.parquet" | |
| }, | |
| { | |
| "path": "data/copy_number_seg_file.parquet", | |
| "sha256": "617ae20a8f715d65154a664d49ed42c1258477774e7df50bd4109a2d9d509a52", | |
| "size": 5061, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/copy_number_seg_file.parquet" | |
| }, | |
| { | |
| "path": "data/gene.parquet", | |
| "sha256": "e13134755543f7eadba43c7a88b602897249c12a953f42e4804c6e5c43b5f19d", | |
| "size": 629503, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/gene.parquet" | |
| }, | |
| { | |
| "path": "data/gene_alias.parquet", | |
| "sha256": "79d4b4d00d9e3eb20aefea6907b77472e5153aa6bd238905876f69d3baf1e9e1", | |
| "size": 505844, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/gene_alias.parquet" | |
| }, | |
| { | |
| "path": "data/gene_panel.parquet", | |
| "sha256": "8ce667bf4814ea4e32c855113f85de3e5727b3dcb42f584092d4c055b8e914ae", | |
| "size": 4523, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/gene_panel.parquet" | |
| }, | |
| { | |
| "path": "data/gene_panel_list.parquet", | |
| "sha256": "df5ebc1dc017d8093a194ceea5627af3d2a4ab9a87b0c43e190ec4e4fc030925", | |
| "size": 49689, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/gene_panel_list.parquet" | |
| }, | |
| { | |
| "path": "data/gene_panel_to_gene_derived.parquet", | |
| "sha256": "8b54eca662c78ea401df544d236d8b7a3a9e30091f2dd4d62b855d8050be875c", | |
| "size": 303767, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/gene_panel_to_gene_derived.parquet" | |
| }, | |
| { | |
| "path": "data/generic_assay_data_derived.parquet", | |
| "sha256": "ae86b5d580d4384406a5ee44a67eead83a4fa4c4ffdd716bb8dfa2d0eb6f5fbf", | |
| "size": 18887356978, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/generic_assay_data_derived.parquet" | |
| }, | |
| { | |
| "path": "data/generic_assay_meta_derived.parquet", | |
| "sha256": "04b93f2a111a9dd9b41f9b2f27ef791d6a853e251c72a44c195e2bc6729bec56", | |
| "size": 16454504, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/generic_assay_meta_derived.parquet" | |
| }, | |
| { | |
| "path": "data/generic_assay_profile_entity_derived.parquet", | |
| "sha256": "1cfaacc1530b41ea4043984f610a65a93ba1a08183ca3c080f10d03ccfe24015", | |
| "size": 52104839, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/generic_assay_profile_entity_derived.parquet" | |
| }, | |
| { | |
| "path": "data/generic_entity_properties.parquet", | |
| "sha256": "52d08f3badec9bc9a1cc510585bc7b8ab115c75896a4ea4fe3bfdd82881e1450", | |
| "size": 14893040, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/generic_entity_properties.parquet" | |
| }, | |
| { | |
| "path": "data/geneset.parquet", | |
| "sha256": "4214b391af961bebd7466f77ecedf66e6cd7933e791b4cdf57484717b8d358be", | |
| "size": 1371100, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/geneset.parquet" | |
| }, | |
| { | |
| "path": "data/geneset_gene.parquet", | |
| "sha256": "03f66c7440dc1efb7d67e7b6a7da02ac3aac15a00bb7e317b33ada0236755018", | |
| "size": 8027722, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/geneset_gene.parquet" | |
| }, | |
| { | |
| "path": "data/geneset_hierarchy_leaf.parquet", | |
| "sha256": "6a3b24a2f223524a3c4ce182691cb8d7db2c2e59fa12b0512d9297328239b457", | |
| "size": 147, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/geneset_hierarchy_leaf.parquet" | |
| }, | |
| { | |
| "path": "data/geneset_hierarchy_node.parquet", | |
| "sha256": "b8bbecef8cf6a6f4a2f32c03fd12e90e3f8c1224a477b03b4fcad722b8a0fea5", | |
| "size": 171, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/geneset_hierarchy_node.parquet" | |
| }, | |
| { | |
| "path": "data/genetic_alteration.parquet", | |
| "sha256": "323f677e0671af67a55a2f19b84ed6762ea7767ade65c5189548c55e80e88d0d", | |
| "size": 37499018955, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/genetic_alteration.parquet" | |
| }, | |
| { | |
| "path": "data/genetic_alteration_derived.parquet", | |
| "sha256": "e4d3b4f27cd19fc602d48ff41d6f57f7e8cc06df4941664790944fab5ddf5590", | |
| "size": 28206483000, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/genetic_alteration_derived.parquet" | |
| }, | |
| { | |
| "path": "data/genetic_entity.parquet", | |
| "sha256": "dd50264bc3c7034a57273e27b878a4d52b07594abee2fb2650508c28e8d77ec3", | |
| "size": 6682327, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/genetic_entity.parquet" | |
| }, | |
| { | |
| "path": "data/genetic_profile.parquet", | |
| "sha256": "79adaaa1df8efd0dc1e541003ff12d32eb3dd8ba9c4b38644bd852d6f969c236", | |
| "size": 62602, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/genetic_profile.parquet" | |
| }, | |
| { | |
| "path": "data/genetic_profile_link.parquet", | |
| "sha256": "4a7d90e738c2e882518386298988720feb417ea4dcceb8627b16d7e0c17c6b4b", | |
| "size": 1322, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/genetic_profile_link.parquet" | |
| }, | |
| { | |
| "path": "data/genetic_profile_samples.parquet", | |
| "sha256": "1dcd5968588572f47fe8a59cebec3ec65b0f27100b64a2a19f5bf89304ccded7", | |
| "size": 1043539, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/genetic_profile_samples.parquet" | |
| }, | |
| { | |
| "path": "data/genomic_event_derived.parquet", | |
| "sha256": "516f4b0fd0fd87705ef3e48d835a56bfe9875070dab5a0cf938a6d23986dc992", | |
| "size": 280956310, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/genomic_event_derived.parquet" | |
| }, | |
| { | |
| "path": "data/gistic.parquet", | |
| "sha256": "b35e10cb68886db23243bb529c6dffb984a7d217b3e305ee1fa2bfcbb52d69dd", | |
| "size": 61982, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/gistic.parquet" | |
| }, | |
| { | |
| "path": "data/gistic_to_gene.parquet", | |
| "sha256": "100584f5ad5c80983174d0eb3db6fbf8f24141c74ee2d63f6e902df69bba6222", | |
| "size": 364027, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/gistic_to_gene.parquet" | |
| }, | |
| { | |
| "path": "data/info.parquet", | |
| "sha256": "b93e609dcb7143f1713563d272e6f9d535861c4d48ba3f3cfa2ca11b5c720daf", | |
| "size": 1332, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/info.parquet" | |
| }, | |
| { | |
| "path": "data/mut_sig.parquet", | |
| "sha256": "fd563a7d8ed48603b7661197b0258aa3bb08c5f6525605e58589693c61aa37a4", | |
| "size": 52564, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/mut_sig.parquet" | |
| }, | |
| { | |
| "path": "data/mutation.parquet", | |
| "sha256": "e6aa21da71bbc5c36ced685e026e6f074652759b58302a973f1de2ab2a9cedbb", | |
| "size": 175699132, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/mutation.parquet" | |
| }, | |
| { | |
| "path": "data/mutation_count_by_keyword.parquet", | |
| "sha256": "9202d1ddd71df6905106ffdd67ee848ac5e8c118945632ddf75006c1810e80ed", | |
| "size": 86911497, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/mutation_count_by_keyword.parquet" | |
| }, | |
| { | |
| "path": "data/mutation_derived.parquet", | |
| "sha256": "36b84535dc8e8fe107e5fb8ee6c8f1d570be0737a310a31aa1f6764ebbb5851d", | |
| "size": 610223652, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/mutation_derived.parquet" | |
| }, | |
| { | |
| "path": "data/mutation_event.parquet", | |
| "sha256": "9840860b51bfc49c796f5e8883abb6af4294ce966f4a6d2fbaf858534c61aa0a", | |
| "size": 296620856, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/mutation_event.parquet" | |
| }, | |
| { | |
| "path": "data/patient.parquet", | |
| "sha256": "83a6fede99448b35263cc041e4ad98fa30931e7b914795224fa9b5cac01e1cb4", | |
| "size": 1289194, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/patient.parquet" | |
| }, | |
| { | |
| "path": "data/reference_genome.parquet", | |
| "sha256": "9bfc990b87f46743b23627d959273e5561c91900b1ad12f26a1b6a1c847548e2", | |
| "size": 2959, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/reference_genome.parquet" | |
| }, | |
| { | |
| "path": "data/reference_genome_gene.parquet", | |
| "sha256": "efbc958d75cf9ea468b1103935434ad98a900b6d1466509ca4e6743f7510aaa8", | |
| "size": 398071, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/reference_genome_gene.parquet" | |
| }, | |
| { | |
| "path": "data/resource.parquet", | |
| "sha256": "02f4390285a6531bd8c58ea1b8dc1444a23341237b3e4a1deb1514cc28445ee6", | |
| "size": 1602813, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/resource.parquet" | |
| }, | |
| { | |
| "path": "data/resource_definition.parquet", | |
| "sha256": "2e93014ae0f000121631abfd780df9c46ec9e52c1c790826a9c3584bdbc71726", | |
| "size": 16715, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/resource_definition.parquet" | |
| }, | |
| { | |
| "path": "data/sample.parquet", | |
| "sha256": "6320eff3626bd3c5f38fb4aee7ccbe9f81280457da18b082b7f589b75cfec338", | |
| "size": 2115130, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/sample.parquet" | |
| }, | |
| { | |
| "path": "data/sample_cna_event.parquet", | |
| "sha256": "54746b6ae1e2df9744868fc823a788e68145fa78c74f3f90af2a272f0f46f53f", | |
| "size": 35107564, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/sample_cna_event.parquet" | |
| }, | |
| { | |
| "path": "data/sample_derived.parquet", | |
| "sha256": "f53d53c41406ffd3d514a691652c8f02629efce09a36d23dcc959795c5d20476", | |
| "size": 8078828, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/sample_derived.parquet" | |
| }, | |
| { | |
| "path": "data/sample_list.parquet", | |
| "sha256": "282edaf41bc9e0d47e4d034412edf25d21818f21809092b7993406a2f4ad659d", | |
| "size": 58463, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/sample_list.parquet" | |
| }, | |
| { | |
| "path": "data/sample_list_list.parquet", | |
| "sha256": "bebebc5af5952cc222af3abb07220210ad3674365235eb941ee3d40776ebfded", | |
| "size": 1351448, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/sample_list_list.parquet" | |
| }, | |
| { | |
| "path": "data/sample_profile.parquet", | |
| "sha256": "81a5a923dcc6e25c7145b969c6b49ddb6d87f0799c6bba3464663ae78e7b00df", | |
| "size": 1123905, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/sample_profile.parquet" | |
| }, | |
| { | |
| "path": "data/sample_to_gene_panel_derived.parquet", | |
| "sha256": "b4fae18ffc6df8ceac1b2c60e70ca99371a2671ac539bb86f0a456e26cee482b", | |
| "size": 3536848, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/sample_to_gene_panel_derived.parquet" | |
| }, | |
| { | |
| "path": "data/structural_variant.parquet", | |
| "sha256": "76e38ad732763e3a96459d1072c7ea1f42cfe5c15e4debec36fb6f9f0e541f12", | |
| "size": 7386821, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/structural_variant.parquet" | |
| }, | |
| { | |
| "path": "data/type_of_cancer.parquet", | |
| "sha256": "2d60bad29edda474b004df28203d67a483b5cfab40a60268ddf8c9ebb6d7cc79", | |
| "size": 23239, | |
| "source_key": "clickhouse/dump_2026_11_08_v3_1_0/type_of_cancer.parquet" | |
| } | |
| ], | |
| "manifest_sha256": "85dbf104dfe8440e54ef568accf140d16a2c579383153c2b5a7ee7e870342927", | |
| "published_at": "2026-11-09T02:26:18Z", | |
| "schema_version": "3.1.0", | |
| "source_url": "https://sc-203403084713-pp-jbeobuumvm3r4-bucket-rbgakorqrcyx.s3.us-east-1.amazonaws.com/clickhouse/dump_2026_11_08_v3_1_0" | |
| } | |