Download final-skeleton/raw/rb_code/src/researchbench/generation.py from canho/old-storage-backup: direct link, hf CLI and curl.
- Browser
- Download file 26.5 kB
-
https://huggingface.co/datasets/canho/old-storage-backup/resolve/main/final-skeleton/raw/rb_code/src/researchbench/generation.py
- Command line
-
hf download hf://datasets/canho/old-storage-backup/final-skeleton/raw/rb_code/src/researchbench/generation.py
-
curl -L -o generation.py https://huggingface.co/datasets/canho/old-storage-backup/resolve/main/final-skeleton/raw/rb_code/src/researchbench/generation.py
26.5 kB
| """Run and score hypothesis composition with MOOSE-Chem-compatible prompts.""" | |
| from __future__ import annotations | |
| import re | |
| from concurrent.futures import ThreadPoolExecutor | |
| from collections.abc import Callable | |
| from typing import Any | |
| from .clients import ModelClient | |
| from .data_io import best_title_match | |
| from .prompts import ( | |
| background_survey_text, | |
| generation_additional_inspiration_screening_prompt, | |
| generation_between_inspiration_recombine_prompt, | |
| generation_between_inspiration_recombine_refine_prompt, | |
| generation_distinct_mutation_prompt, | |
| generation_feedback_prompt, | |
| generation_initial_prompt, | |
| generation_refine_prompt, | |
| generation_same_inspiration_recombine_prompt, | |
| generation_same_inspiration_recombine_refine_prompt, | |
| generation_score_prompt, | |
| generation_self_eval_prompt, | |
| ) | |
| from .retrieve import parse_retrieve_response | |
| from .schemas import DEFAULT_GENERATION_PARAMS | |
| def _strip_reasoning_model_content(text: str) -> str: | |
| answer = re.search(r"<answer>(.*?)</answer>", text, re.IGNORECASE | re.DOTALL) | |
| if answer: | |
| return answer.group(1).strip() | |
| after_think = re.search(r"</think>\s*\n(.+)", text, re.IGNORECASE | re.DOTALL) | |
| if after_think: | |
| return after_think.group(1).strip() | |
| cleaned = re.sub(r"<think>.*?</think>", "", text, flags=re.IGNORECASE | re.DOTALL) | |
| cleaned = re.sub(r"<think>.*$", "", cleaned, flags=re.IGNORECASE | re.DOTALL) | |
| cleaned = re.sub(r"^.*</think>", "", cleaned, flags=re.IGNORECASE | re.DOTALL) | |
| return cleaned.strip() or text | |
| def extract_marker_field(text: str, field_name: str) -> str | None: | |
| plain = re.sub(r"[\*_]+", "", _strip_reasoning_model_content(text)) | |
| pattern = rf"{re.escape(field_name)}\s*starts\s*:?\s*([\s\S]+?)\s*{re.escape(field_name)}\s*ends" | |
| match = re.search(pattern, plain, flags=re.IGNORECASE | re.DOTALL) | |
| if match: | |
| value = match.group(1).strip() | |
| return value or None | |
| pattern = rf"{re.escape(field_name)}\s*[::]\s*(.+?)(?:\n|$)" | |
| match = re.search(pattern, plain, flags=re.IGNORECASE) | |
| if match: | |
| value = match.group(1).strip().strip("*").strip() | |
| return value or None | |
| return None | |
| def parse_hypothesis_response(text: str) -> tuple[str, str]: | |
| hypothesis = ( | |
| extract_marker_field(text, "Hypothesis") | |
| or extract_marker_field(text, "Refined Hypothesis") | |
| or "" | |
| ) | |
| reasoning = extract_marker_field(text, "Key Reasoning") or "" | |
| if not hypothesis: | |
| legacy = re.search( | |
| r"Hypothesis\s*[::]\s*(?P<hyp>.*?)(?:\n\s*Reasoning Process\s*[::]\s*(?P<reason>.*))?\Z", | |
| text.strip(), | |
| re.IGNORECASE | re.DOTALL, | |
| ) | |
| if legacy: | |
| hypothesis = legacy.group("hyp").strip() | |
| reasoning = (legacy.group("reason") or "").strip() | |
| else: | |
| hypothesis = text.strip() | |
| return hypothesis, reasoning | |
| def parse_matched_score(text: str) -> float | None: | |
| marked = extract_marker_field(text, "Matched score") | |
| if marked is not None: | |
| numbers = re.findall(r"[0-5](?:\.\d+)?", marked) | |
| if numbers: | |
| return float(numbers[0]) | |
| match = re.search(r"Matched\s*score\s*[::]\s*(?P<score>[0-5](?:\.\d+)?)", text, re.IGNORECASE) | |
| if not match: | |
| return None | |
| score = float(match.group("score")) | |
| return score if 0 <= score <= 5 else None | |
| def parse_self_eval_scores(text: str) -> tuple[list[int], list[str]]: | |
| score_types = ["Validness", "Novelty", "Significance", "Specificity"] | |
| scores: list[int] = [] | |
| reasons: list[str] = [] | |
| for score_type in score_types: | |
| reason = extract_marker_field(text, f"{score_type} Reason") or "" | |
| score_text = extract_marker_field(text, f"{score_type} Score") | |
| score: int | None = None | |
| if score_text: | |
| numbers = re.findall(r"\d+", score_text) | |
| if numbers: | |
| score = int(numbers[0]) | |
| if score is None: | |
| match = re.search(rf"{score_type}\s+(?:score\s*)?[::]\s*(\d+)", text, re.IGNORECASE) | |
| if match: | |
| score = int(match.group(1)) | |
| if score is None or not 1 <= score <= 5: | |
| score = 3 | |
| scores.append(score) | |
| reasons.append(reason) | |
| return scores, reasons | |
| def _with_default_reason(inspirations: list[dict[str, Any]]) -> list[dict[str, Any]]: | |
| normalized = [] | |
| for inspiration in inspirations: | |
| normalized.append( | |
| { | |
| "title": inspiration.get("title", ""), | |
| "abstract": inspiration.get("abstract", ""), | |
| "reason": inspiration.get("reason", inspiration.get("insp", "Not provided yet.")), | |
| } | |
| ) | |
| return normalized | |
| def _generation_record_view(record: dict[str, Any], *, use_background_survey: bool) -> dict[str, Any]: | |
| return { | |
| **record, | |
| "background_survey": background_survey_text( | |
| record.get("background_survey", ""), | |
| use_background_survey=use_background_survey, | |
| ), | |
| } | |
| def _self_evaluate_hypothesis(hypothesis: str, client: ModelClient) -> dict[str, Any]: | |
| response = client.generate(generation_self_eval_prompt(hypothesis), temperature=1.0) | |
| scores, reasons = parse_self_eval_scores(response) | |
| return { | |
| "scores": scores, | |
| "score_reasons": reasons, | |
| "average_score": sum(scores) / len(scores) if scores else 0.0, | |
| "raw_response": response, | |
| } | |
| def estimate_generation_model_calls( | |
| record: dict[str, Any], | |
| *, | |
| num_mutations: int = int(DEFAULT_GENERATION_PARAMS["num_mutations"]), | |
| num_itr_self_refine: int = int(DEFAULT_GENERATION_PARAMS["num_itr_self_refine"]), | |
| max_inspiration_search_steps: int = int(DEFAULT_GENERATION_PARAMS["max_inspiration_search_steps"]), | |
| num_screening_window_size: int = int(DEFAULT_GENERATION_PARAMS["num_screening_window_size"]), | |
| num_screening_keep_size: int = int(DEFAULT_GENERATION_PARAMS["num_screening_keep_size"]), | |
| recom_num_beam_size: int = int(DEFAULT_GENERATION_PARAMS["recom_num_beam_size"]), | |
| ) -> int: | |
| inspirations = list( | |
| record.get("gold_inspirations") | |
| or record.get("true_retrieve") | |
| or record.get("ture_retrieve") | |
| or [] | |
| )[:max_inspiration_search_steps] | |
| num_inspirations = len(inspirations) | |
| if num_inspirations == 0: | |
| return 0 | |
| calls_per_hypothesis_node = 2 * num_itr_self_refine + 1 | |
| first_step_nodes_per_inspiration = num_mutations + (1 if num_mutations > 1 else 0) | |
| total = num_inspirations * first_step_nodes_per_inspiration * calls_per_hypothesis_node | |
| ranked_nodes = [{"used": {idx}} for idx in range(num_inspirations)] | |
| for _step_id in range(2, min(max_inspiration_search_steps, num_inspirations) + 1): | |
| ranked_nodes = ranked_nodes[: max(1, min(recom_num_beam_size, len(ranked_nodes)))] | |
| next_nodes = [] | |
| for ranked_node in ranked_nodes: | |
| other_count = num_inspirations - len(ranked_node["used"]) | |
| if other_count <= 0: | |
| continue | |
| if other_count > num_screening_keep_size: | |
| for start in range(0, other_count, num_screening_window_size): | |
| window_count = min(num_screening_window_size, other_count - start) | |
| if window_count > num_screening_keep_size: | |
| total += 1 | |
| for other_idx in range(num_inspirations): | |
| if other_idx in ranked_node["used"]: | |
| continue | |
| total += calls_per_hypothesis_node | |
| next_nodes.append({"used": ranked_node["used"] | {other_idx}}) | |
| if not next_nodes: | |
| break | |
| ranked_nodes = next_nodes | |
| return total | |
| def _generate_with_refinement( | |
| record: dict[str, Any], | |
| inspiration: dict[str, Any], | |
| client: ModelClient, | |
| *, | |
| num_itr_self_refine: int, | |
| other_mutations: list[str] | None = None, | |
| recombination_type: int = 0, | |
| core_hypothesis: str | None = None, | |
| other_inspiration: dict[str, Any] | None = None, | |
| other_hypothesis: str | None = None, | |
| ) -> dict[str, Any]: | |
| trace = [] | |
| previous_hypothesis: str | None = None | |
| feedback: str | None = None | |
| current_hypothesis = "" | |
| current_reasoning = "" | |
| for refine_iter in range(num_itr_self_refine): | |
| if refine_iter == 0: | |
| if recombination_type == 2: | |
| assert core_hypothesis is not None and other_inspiration is not None and other_hypothesis is not None | |
| prompt = generation_between_inspiration_recombine_prompt( | |
| record["research_question"], | |
| record.get("background_survey", ""), | |
| inspiration, | |
| core_hypothesis, | |
| other_inspiration, | |
| other_hypothesis, | |
| ) | |
| elif recombination_type == 1: | |
| prompt = generation_same_inspiration_recombine_prompt( | |
| record["research_question"], | |
| record.get("background_survey", ""), | |
| inspiration, | |
| other_mutations or [], | |
| ) | |
| elif other_mutations: | |
| prompt = generation_distinct_mutation_prompt( | |
| record["research_question"], | |
| record.get("background_survey", ""), | |
| inspiration, | |
| other_mutations, | |
| ) | |
| else: | |
| prompt = generation_initial_prompt( | |
| record["research_question"], | |
| record.get("background_survey", ""), | |
| inspiration, | |
| ) | |
| else: | |
| assert previous_hypothesis is not None and feedback is not None | |
| if recombination_type == 2: | |
| assert core_hypothesis is not None and other_inspiration is not None and other_hypothesis is not None | |
| prompt = generation_between_inspiration_recombine_refine_prompt( | |
| record["research_question"], | |
| record.get("background_survey", ""), | |
| inspiration, | |
| core_hypothesis, | |
| other_inspiration, | |
| other_hypothesis, | |
| previous_hypothesis, | |
| feedback, | |
| ) | |
| elif recombination_type == 1: | |
| prompt = generation_same_inspiration_recombine_refine_prompt( | |
| record["research_question"], | |
| record.get("background_survey", ""), | |
| inspiration, | |
| other_mutations or [], | |
| previous_hypothesis, | |
| feedback, | |
| ) | |
| else: | |
| prompt = generation_refine_prompt( | |
| record["research_question"], | |
| record.get("background_survey", ""), | |
| inspiration, | |
| previous_hypothesis, | |
| feedback, | |
| ) | |
| response = client.generate(prompt, temperature=1.0) | |
| current_hypothesis, current_reasoning = parse_hypothesis_response(response) | |
| feedback_prompt = generation_feedback_prompt(current_hypothesis, current_reasoning) | |
| feedback = client.generate(feedback_prompt, temperature=1.0) | |
| trace.append( | |
| { | |
| "iteration": refine_iter, | |
| "prompt": prompt, | |
| "raw_response": response, | |
| "hypothesis": current_hypothesis, | |
| "reasoning": current_reasoning, | |
| "feedback": feedback, | |
| } | |
| ) | |
| previous_hypothesis = current_hypothesis | |
| self_eval = _self_evaluate_hypothesis(current_hypothesis, client) if current_hypothesis else { | |
| "scores": [3, 3, 3, 3], | |
| "score_reasons": ["", "", "", ""], | |
| "average_score": 3.0, | |
| "raw_response": "", | |
| } | |
| return { | |
| "hypothesis": current_hypothesis, | |
| "reasoning": current_reasoning, | |
| "feedback": feedback or "", | |
| "self_eval": self_eval, | |
| "trace": trace, | |
| } | |
| def _generate_for_one_inspiration( | |
| record: dict[str, Any], | |
| inspiration: dict[str, Any], | |
| client: ModelClient, | |
| *, | |
| num_mutations: int, | |
| num_itr_self_refine: int, | |
| ) -> dict[str, Any]: | |
| mutations: dict[str, Any] = {} | |
| first = _generate_with_refinement( | |
| record, | |
| inspiration, | |
| client, | |
| num_itr_self_refine=num_itr_self_refine, | |
| ) | |
| mutations["0"] = first | |
| for mutation_id in range(1, num_mutations): | |
| other_mutations = [mutations[key]["hypothesis"] for key in mutations] | |
| mutations[str(mutation_id)] = _generate_with_refinement( | |
| record, | |
| inspiration, | |
| client, | |
| num_itr_self_refine=num_itr_self_refine, | |
| other_mutations=other_mutations, | |
| ) | |
| if num_mutations > 1: | |
| other_mutations = [mutations[key]["hypothesis"] for key in mutations] | |
| mutations["recom"] = _generate_with_refinement( | |
| record, | |
| inspiration, | |
| client, | |
| num_itr_self_refine=num_itr_self_refine, | |
| other_mutations=other_mutations, | |
| recombination_type=1, | |
| ) | |
| best_key, best_node = max( | |
| mutations.items(), | |
| key=lambda item: item[1]["self_eval"]["average_score"], | |
| ) | |
| return { | |
| "inspiration_title": inspiration.get("title", ""), | |
| "mutations": mutations, | |
| "best_mutation_id": best_key, | |
| "best_hypothesis": best_node["hypothesis"], | |
| "best_self_eval": best_node["self_eval"], | |
| } | |
| def _screen_complementary_inspirations( | |
| record: dict[str, Any], | |
| core_inspiration: dict[str, Any], | |
| core_hypothesis: str, | |
| other_mutations: list[dict[str, Any]], | |
| client: ModelClient, | |
| *, | |
| window_size: int, | |
| keep_size: int, | |
| ) -> list[dict[str, Any]]: | |
| if not other_mutations: | |
| return [] | |
| if len(other_mutations) <= keep_size: | |
| return other_mutations | |
| selected: list[dict[str, Any]] = [] | |
| for start in range(0, len(other_mutations), window_size): | |
| window = other_mutations[start : start + window_size] | |
| if len(window) <= keep_size: | |
| selected.extend(window) | |
| continue | |
| if client.is_mock: | |
| selected.extend(window[:keep_size]) | |
| continue | |
| prompt = generation_additional_inspiration_screening_prompt( | |
| record["research_question"], | |
| record.get("background_survey", ""), | |
| core_inspiration, | |
| core_hypothesis, | |
| window, | |
| keep_size=keep_size, | |
| ) | |
| response = client.generate(prompt, temperature=0.0) | |
| used: set[int] = set() | |
| for parsed in parse_retrieve_response(response): | |
| idx, score = best_title_match(parsed["title"], window, threshold=0.62) | |
| if idx is None or idx in used: | |
| continue | |
| used.add(idx) | |
| selected.append({**window[idx], "match_score": score}) | |
| if len(used) >= keep_size: | |
| break | |
| return selected | |
| def _inter_inspiration_recombine( | |
| record: dict[str, Any], | |
| inspiration_results: list[dict[str, Any]], | |
| inspirations: list[dict[str, Any]], | |
| client: ModelClient, | |
| *, | |
| num_itr_self_refine: int, | |
| max_steps: int, | |
| num_screening_window_size: int, | |
| num_screening_keep_size: int, | |
| recom_num_beam_size: int, | |
| recombination_concurrency: int = 1, | |
| client_factory: Callable[[], ModelClient] | None = None, | |
| ) -> list[dict[str, Any]]: | |
| inter_results = [] | |
| client_factory = client_factory or (lambda: client) | |
| ranked_nodes: list[dict[str, Any]] = [ | |
| { | |
| "inspiration_index": idx, | |
| "hypothesis": item["best_hypothesis"], | |
| "self_eval": item["best_self_eval"], | |
| "mutation_trail": [item["best_mutation_id"]], | |
| } | |
| for idx, item in enumerate(inspiration_results) | |
| ] | |
| for step_id in range(2, min(max_steps, len(inspirations)) + 1): | |
| ranked_nodes = sorted( | |
| ranked_nodes, | |
| key=lambda item: item["self_eval"]["average_score"], | |
| reverse=True, | |
| ) | |
| if not ranked_nodes: | |
| break | |
| beam_size = min(recom_num_beam_size, len(ranked_nodes)) | |
| score_threshold = ranked_nodes[beam_size - 1]["self_eval"]["average_score"] | |
| filtered_nodes = [ | |
| item for item in ranked_nodes if item["self_eval"]["average_score"] >= score_threshold | |
| ] | |
| best_first_step_by_inspiration = { | |
| idx: { | |
| "title": inspirations[idx].get("title", ""), | |
| "abstract": inspirations[idx].get("abstract", ""), | |
| "hypothesis": result["best_hypothesis"], | |
| } | |
| for idx, result in enumerate(inspiration_results) | |
| } | |
| generation_tasks: list[tuple[int, dict[str, Any], dict[str, Any], dict[str, Any], int]] = [] | |
| for node_id, ranked_node in enumerate(filtered_nodes): | |
| core_idx = ranked_node["inspiration_index"] | |
| core_inspiration = inspirations[core_idx] | |
| used_titles = {core_inspiration.get("title", "")} | |
| for trail_item in ranked_node["mutation_trail"]: | |
| used_titles.update(part for part in str(trail_item).split(";") if part) | |
| other_mutations = [ | |
| mutation | |
| for idx, mutation in best_first_step_by_inspiration.items() | |
| if idx != core_idx and mutation["title"] not in used_titles | |
| ] | |
| selected_other_mutations = _screen_complementary_inspirations( | |
| record, | |
| core_inspiration, | |
| ranked_node["hypothesis"], | |
| other_mutations, | |
| client_factory(), | |
| window_size=num_screening_window_size, | |
| keep_size=num_screening_keep_size, | |
| ) | |
| for other in selected_other_mutations: | |
| other_idx = next( | |
| ( | |
| idx | |
| for idx, inspiration in enumerate(inspirations) | |
| if inspiration.get("title", "") == other.get("title", "") | |
| ), | |
| None, | |
| ) | |
| if other_idx is None: | |
| continue | |
| generation_tasks.append((node_id, ranked_node, core_inspiration, other, other_idx)) | |
| def run_task(task: tuple[int, dict[str, Any], dict[str, Any], dict[str, Any], int]) -> dict[str, Any]: | |
| node_id, ranked_node, core_inspiration, other, other_idx = task | |
| generated = _generate_with_refinement( | |
| record, | |
| core_inspiration, | |
| client_factory(), | |
| num_itr_self_refine=num_itr_self_refine, | |
| recombination_type=2, | |
| core_hypothesis=ranked_node["hypothesis"], | |
| other_inspiration=inspirations[other_idx], | |
| other_hypothesis=other["hypothesis"], | |
| ) | |
| trail = ranked_node["mutation_trail"] + [other["title"], f"inter_recom_{step_id - 1}"] | |
| return { | |
| "step": step_id, | |
| "node_id": node_id, | |
| "core_inspiration_title": core_inspiration.get("title", ""), | |
| "other_inspiration_title": other.get("title", ""), | |
| "hypothesis": generated["hypothesis"], | |
| "self_eval": generated["self_eval"], | |
| "mutation_trail": trail, | |
| "node": generated, | |
| "inspiration_index": ranked_node["inspiration_index"], | |
| } | |
| if recombination_concurrency > 1 and len(generation_tasks) > 1: | |
| with ThreadPoolExecutor(max_workers=recombination_concurrency) as executor: | |
| step_results = list(executor.map(run_task, generation_tasks)) | |
| else: | |
| step_results = [run_task(task) for task in generation_tasks] | |
| next_ranked_nodes: list[dict[str, Any]] = [] | |
| for result in step_results: | |
| inter_results.append({key: value for key, value in result.items() if key != "inspiration_index"}) | |
| next_ranked_nodes.append( | |
| { | |
| "inspiration_index": result["inspiration_index"], | |
| "hypothesis": result["hypothesis"], | |
| "self_eval": result["self_eval"], | |
| "mutation_trail": result["mutation_trail"], | |
| } | |
| ) | |
| if not next_ranked_nodes: | |
| break | |
| ranked_nodes = next_ranked_nodes | |
| return inter_results | |
| def run_generation_record( | |
| record: dict[str, Any], | |
| client: ModelClient, | |
| *, | |
| num_mutations: int = int(DEFAULT_GENERATION_PARAMS["num_mutations"]), | |
| num_itr_self_refine: int = int(DEFAULT_GENERATION_PARAMS["num_itr_self_refine"]), | |
| max_inspiration_search_steps: int = int(DEFAULT_GENERATION_PARAMS["max_inspiration_search_steps"]), | |
| use_background_survey: bool = bool(DEFAULT_GENERATION_PARAMS["use_background_survey"]), | |
| num_screening_window_size: int = int(DEFAULT_GENERATION_PARAMS["num_screening_window_size"]), | |
| num_screening_keep_size: int = int(DEFAULT_GENERATION_PARAMS["num_screening_keep_size"]), | |
| recom_num_beam_size: int = int(DEFAULT_GENERATION_PARAMS["recom_num_beam_size"]), | |
| inner_concurrency: int = 1, | |
| client_factory: Callable[[], ModelClient] | None = None, | |
| ) -> dict[str, Any]: | |
| inner_concurrency = max(1, inner_concurrency) | |
| client_factory = client_factory or (lambda: client) | |
| record_for_prompt = _generation_record_view(record, use_background_survey=use_background_survey) | |
| inspirations = _with_default_reason( | |
| list( | |
| record.get("gold_inspirations") | |
| or record.get("true_retrieve") | |
| or record.get("ture_retrieve") | |
| or [] | |
| )[:max_inspiration_search_steps] | |
| ) | |
| def run_inspiration(inspiration: dict[str, Any]) -> dict[str, Any]: | |
| return _generate_for_one_inspiration( | |
| record_for_prompt, | |
| inspiration, | |
| client_factory(), | |
| num_mutations=num_mutations, | |
| num_itr_self_refine=num_itr_self_refine, | |
| ) | |
| if inner_concurrency > 1 and len(inspirations) > 1: | |
| with ThreadPoolExecutor(max_workers=inner_concurrency) as executor: | |
| inspiration_results = list(executor.map(run_inspiration, inspirations)) | |
| else: | |
| inspiration_results = [run_inspiration(inspiration) for inspiration in inspirations] | |
| inter_results = _inter_inspiration_recombine( | |
| record_for_prompt, | |
| inspiration_results, | |
| inspirations, | |
| client_factory(), | |
| num_itr_self_refine=num_itr_self_refine, | |
| max_steps=max_inspiration_search_steps, | |
| num_screening_window_size=num_screening_window_size, | |
| num_screening_keep_size=num_screening_keep_size, | |
| recom_num_beam_size=recom_num_beam_size, | |
| recombination_concurrency=inner_concurrency, | |
| client_factory=client_factory, | |
| ) | |
| candidates = [ | |
| { | |
| "source": f"inspiration:{item['inspiration_title']}", | |
| "hypothesis": item["best_hypothesis"], | |
| "self_eval": item["best_self_eval"], | |
| } | |
| for item in inspiration_results | |
| ] + [ | |
| { | |
| "source": f"inter_recom_step:{item['step']}", | |
| "hypothesis": item["hypothesis"], | |
| "self_eval": item["self_eval"], | |
| } | |
| for item in inter_results | |
| ] | |
| best_candidate = max(candidates, key=lambda item: item["self_eval"]["average_score"]) if candidates else None | |
| final_hypothesis = best_candidate["hypothesis"] if best_candidate else "" | |
| return { | |
| "sample_id": record["sample_id"], | |
| "generated_hypotheses": candidates, | |
| "final_hypothesis": final_hypothesis, | |
| "final_reasoning": best_candidate["source"] if best_candidate else "", | |
| "moosechem_trace": { | |
| "inspiration_results": inspiration_results, | |
| "inter_inspiration_recombinations": inter_results, | |
| "best_candidate": best_candidate, | |
| "params": { | |
| "if_use_gdth_insp": True, | |
| "num_mutations": num_mutations, | |
| "num_itr_self_refine": num_itr_self_refine, | |
| "max_inspiration_search_steps": max_inspiration_search_steps, | |
| "if_use_background_survey": use_background_survey, | |
| "num_screening_window_size": num_screening_window_size, | |
| "num_screening_keep_size": num_screening_keep_size, | |
| "recom_num_beam_size": recom_num_beam_size, | |
| "inner_concurrency": inner_concurrency, | |
| "if_mutate_inside_same_bkg_insp": True, | |
| "if_mutate_between_diff_insp": True, | |
| "if_self_explore": False, | |
| }, | |
| }, | |
| } | |
| def score_generation( | |
| predictions: list[dict[str, Any]], | |
| data: list[dict[str, Any]], | |
| judge_client: ModelClient, | |
| ) -> dict[str, Any]: | |
| data_by_id = {row["sample_id"]: row for row in data} | |
| per_sample = [] | |
| scores = [] | |
| for pred in predictions: | |
| record = data_by_id.get(pred.get("sample_id")) | |
| if not record: | |
| continue | |
| score = pred.get("matched_score") | |
| reason = pred.get("matched_score_reason", "") | |
| if score is None: | |
| key_points = record.get("gold_key_points") or record["gold_hypothesis"] | |
| response = judge_client.generate( | |
| generation_score_prompt(pred.get("final_hypothesis", ""), record["gold_hypothesis"], key_points), | |
| temperature=0.0, | |
| ) | |
| score = parse_matched_score(response) | |
| reason = response | |
| if score is None: | |
| continue | |
| score = float(score) | |
| scores.append(score) | |
| per_sample.append( | |
| { | |
| "sample_id": pred["sample_id"], | |
| "matched_score": score, | |
| "accuracy": score / 5.0, | |
| "reason": reason, | |
| } | |
| ) | |
| average_score = sum(scores) / len(scores) if scores else 0.0 | |
| return { | |
| "summary": { | |
| "count": len(scores), | |
| "average_score": average_score, | |
| "accuracy": average_score / 5.0, | |
| }, | |
| "per_sample": per_sample, | |
| } | |