Datasets:

chongwulab
/

PRISM-models

Tags:

NotSoSharpDressedMan commited on Oct 9

Commit

a68c3a9

verified ·

1 Parent(s): 31d1261

Remove AFR models; EUR-only README and manifest

Browse files

This view is limited to 50 files because it contains too many changes. See raw diff

Files changed (50) hide show

MANIFEST.md5 +0 -234
README.md +13 -38
UKB-AFR/trans/AFR+EUR/ADAM15:Q13444:OID20109:v1:Cardiometabolic/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/ADGRE1:Q14246:OID31483:v1:Oncology_II/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/AHSP:Q9NZD4:OID21078:v1:Neurology/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/ALPI:P09923:OID30497:v1:Inflammation_II/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/ALPI:P09923:OID30497:v1:Inflammation_II/loc2.RData +0 -3
UKB-AFR/trans/AFR+EUR/APOF:Q13790:OID30701:v1:Inflammation_II/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/APOF:Q13790:OID30701:v1:Inflammation_II/loc2.RData +0 -0
UKB-AFR/trans/AFR+EUR/ARHGAP1:Q07960:OID21202:v1:Oncology/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/ARNT:P27540:OID20432:v1:Inflammation/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/BAMBI:Q13145:OID21267:v1:Oncology/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/BCAM:P50895:OID21076:v1:Neurology/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CCL11:P51671:OID20668:v1:Inflammation/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CCL14:Q16627:OID20401:v1:Cardiometabolic/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/CCL25:O15444:OID20674:v1:Inflammation/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CCL2:P13500:OID21004:v1:Neurology/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CCL7:P80098:OID20523:v1:Inflammation/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CD163:Q86VB7:OID20360:v1:Cardiometabolic/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CD209:Q9NNX6:OID20262:v1:Cardiometabolic/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CD300A:Q9UGN4:OID30576:v1:Inflammation_II/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/CD70:P32970:OID20599:v1:Inflammation/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/CD86:P42081:OID31500:v1:Oncology_II/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CDH17:Q12864:OID20134:v1:Cardiometabolic/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CDH17:Q12864:OID20134:v1:Cardiometabolic/loc2.RData +0 -3
UKB-AFR/trans/AFR+EUR/CDH1:P12830:OID20353:v1:Cardiometabolic/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/CDH1:P12830:OID20353:v1:Cardiometabolic/loc2.RData +0 -3
UKB-AFR/trans/AFR+EUR/CDH5:P33151:OID20243:v1:Cardiometabolic/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CEACAM5:P06731:OID21171:v1:Oncology/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/CLEC1A:Q8NC01:OID20099:v1:Cardiometabolic/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CLEC4M:Q9H2X3:OID30405:v1:Cardiometabolic_II/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CRISP3:P54108:OID30715:v1:Inflammation_II/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/CRTAC1:Q9NQ79:OID20279:v1:Cardiometabolic/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CTRC:Q99895:OID20752:v1:Inflammation/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CUZD1:Q86UP6:OID30914:v1:Neurology_II/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/CXCL16:Q9H2A7:OID20282:v1:Cardiometabolic/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/DPEP2:Q9H4A9:OID21305:v1:Oncology/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/DSG2:Q14126:OID21113:v1:Neurology/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/DYNLT1:P63172:OID30925:v1:Neurology_II/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/ELOB:Q15370:OID30127:v1:Cardiometabolic_II/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/ENG:P17813:OID20287:v1:Cardiometabolic/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/EPHA4:P54764:OID30622:v1:Inflammation_II/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/F11:P03951:OID30773:v1:Inflammation_II/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/FAM171B:Q6P995:OID31338:v1:Oncology_II/loc1.RData +0 -0
UKB-AFR/trans/AFR+EUR/FAM171B:Q6P995:OID31338:v1:Oncology_II/loc2.RData +0 -3
UKB-AFR/trans/AFR+EUR/FAM3D:Q96BQ1:OID31514:v1:Oncology_II/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/FAM3D:Q96BQ1:OID31514:v1:Oncology_II/loc2.RData +0 -3
UKB-AFR/trans/AFR+EUR/FASLG:P48023:OID20665:v1:Inflammation/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/FLT1:P17948:OID21301:v1:Oncology/loc1.RData +0 -3
UKB-AFR/trans/AFR+EUR/FUCA1:P04066:OID20261:v1:Cardiometabolic/loc1.RData +0 -3

MANIFEST.md5 CHANGED Viewed

@@ -1,237 +1,3 @@
-a395ffaf1274ab7c4dc17026caa3fb8b  UKB-AFR/trans/AFR+EUR/ADAM15:Q13444:OID20109:v1:Cardiometabolic/loc1.RData
-71a72c2357d763a5e7ca50268ded8410  UKB-AFR/trans/AFR+EUR/ADGRE1:Q14246:OID31483:v1:Oncology_II/loc1.RData
-9d384deac8e0eeb336440f9b18608449  UKB-AFR/trans/AFR+EUR/AHSP:Q9NZD4:OID21078:v1:Neurology/loc1.RData
-c5a73a3cceb2113755d9ea6eb5bbcee6  UKB-AFR/trans/AFR+EUR/ALPI:P09923:OID30497:v1:Inflammation_II/loc1.RData
-9f5f3a61c0a875de789decbc28d278a8  UKB-AFR/trans/AFR+EUR/ALPI:P09923:OID30497:v1:Inflammation_II/loc2.RData
-8f3e4d4be9ff79ab7312dd277af86b69  UKB-AFR/trans/AFR+EUR/APOF:Q13790:OID30701:v1:Inflammation_II/loc1.RData
-a7550eb13dacc0fe8d50453a83128323  UKB-AFR/trans/AFR+EUR/APOF:Q13790:OID30701:v1:Inflammation_II/loc2.RData
-f4ae9947594f939d83a0316daf9e3be7  UKB-AFR/trans/AFR+EUR/ARHGAP1:Q07960:OID21202:v1:Oncology/loc1.RData
-8393cf5d7238aaaad59aa17dfb5eb999  UKB-AFR/trans/AFR+EUR/ARNT:P27540:OID20432:v1:Inflammation/loc1.RData
-f147280ea657aebb47151396fd8dc69e  UKB-AFR/trans/AFR+EUR/BAMBI:Q13145:OID21267:v1:Oncology/loc1.RData
-ddfa13835b0ec16b5bf2b7667b229914  UKB-AFR/trans/AFR+EUR/BCAM:P50895:OID21076:v1:Neurology/loc1.RData
-3f01ff4aeb19dac6e04fb54b8468db8e  UKB-AFR/trans/AFR+EUR/CCL11:P51671:OID20668:v1:Inflammation/loc1.RData
-90ddbbcd6fceb514800d1280b6f9617d  UKB-AFR/trans/AFR+EUR/CCL14:Q16627:OID20401:v1:Cardiometabolic/loc1.RData
-8f50e0d4ab6e40d3ec5d1752010d10ed  UKB-AFR/trans/AFR+EUR/CCL25:O15444:OID20674:v1:Inflammation/loc1.RData
-9ffde9c24c23e9e5441a990adf1a0d9b  UKB-AFR/trans/AFR+EUR/CCL2:P13500:OID21004:v1:Neurology/loc1.RData
-49900492b9f701b9486b2302b8c88af6  UKB-AFR/trans/AFR+EUR/CCL7:P80098:OID20523:v1:Inflammation/loc1.RData
-f8e14463163222cb89b3a5840bdb600d  UKB-AFR/trans/AFR+EUR/CD163:Q86VB7:OID20360:v1:Cardiometabolic/loc1.RData
-9ba589d40d027d9af8f4e3edad03894c  UKB-AFR/trans/AFR+EUR/CD209:Q9NNX6:OID20262:v1:Cardiometabolic/loc1.RData
-31899926467b7c74cda0f4292b8d3e8f  UKB-AFR/trans/AFR+EUR/CD300A:Q9UGN4:OID30576:v1:Inflammation_II/loc1.RData
-ffce126d0d684c54bb5e6c4f378650f9  UKB-AFR/trans/AFR+EUR/CD70:P32970:OID20599:v1:Inflammation/loc1.RData
-50677826e718302a43d2b59348b45c43  UKB-AFR/trans/AFR+EUR/CD86:P42081:OID31500:v1:Oncology_II/loc1.RData
-ee82ba4a615c11be08bee7375e534b6c  UKB-AFR/trans/AFR+EUR/CDH17:Q12864:OID20134:v1:Cardiometabolic/loc1.RData
-aaf3000df448d289f0ff774c04c45da2  UKB-AFR/trans/AFR+EUR/CDH17:Q12864:OID20134:v1:Cardiometabolic/loc2.RData
-b4e1e6993d56eac9829a0603859377a4  UKB-AFR/trans/AFR+EUR/CDH1:P12830:OID20353:v1:Cardiometabolic/loc1.RData
-030822eebf6f18dbae2407227faeab00  UKB-AFR/trans/AFR+EUR/CDH1:P12830:OID20353:v1:Cardiometabolic/loc2.RData
-2cef255f881b09d6a96408565772cba0  UKB-AFR/trans/AFR+EUR/CDH5:P33151:OID20243:v1:Cardiometabolic/loc1.RData
-a6a0dbc9178a3fddc95261bebae66034  UKB-AFR/trans/AFR+EUR/CEACAM5:P06731:OID21171:v1:Oncology/loc1.RData
-4ac37888603fa5a6c818529b83133fc1  UKB-AFR/trans/AFR+EUR/CLEC1A:Q8NC01:OID20099:v1:Cardiometabolic/loc1.RData
-13cd33715d793d28fbd97e0648ae4133  UKB-AFR/trans/AFR+EUR/CLEC4M:Q9H2X3:OID30405:v1:Cardiometabolic_II/loc1.RData
-bf7159a82d82baf183a9c92d918c1a91  UKB-AFR/trans/AFR+EUR/CRISP3:P54108:OID30715:v1:Inflammation_II/loc1.RData
-0c70be9d738b251c0670c43907e79128  UKB-AFR/trans/AFR+EUR/CRTAC1:Q9NQ79:OID20279:v1:Cardiometabolic/loc1.RData
-b8446cfccb1f0cbf40aaa51803fc2e4c  UKB-AFR/trans/AFR+EUR/CTRC:Q99895:OID20752:v1:Inflammation/loc1.RData
-c2e1330440125c8875131970916d3b4d  UKB-AFR/trans/AFR+EUR/CUZD1:Q86UP6:OID30914:v1:Neurology_II/loc1.RData
-58fe140ec9ac8f0d63015e19a117d61a  UKB-AFR/trans/AFR+EUR/CXCL16:Q9H2A7:OID20282:v1:Cardiometabolic/loc1.RData
-20fc4ea098b158103e931c3c1ff6d166  UKB-AFR/trans/AFR+EUR/DPEP2:Q9H4A9:OID21305:v1:Oncology/loc1.RData
-43da0ca199bff332ace8036292afaa32  UKB-AFR/trans/AFR+EUR/DSG2:Q14126:OID21113:v1:Neurology/loc1.RData
-aa216f36bb31c136d7c7d342ff2649f4  UKB-AFR/trans/AFR+EUR/DYNLT1:P63172:OID30925:v1:Neurology_II/loc1.RData
-34c87734b251d0f5ca2d240c09eb0c6d  UKB-AFR/trans/AFR+EUR/ELOB:Q15370:OID30127:v1:Cardiometabolic_II/loc1.RData
-a51cfe53f3b35a23531b12e375ffd989  UKB-AFR/trans/AFR+EUR/ENG:P17813:OID20287:v1:Cardiometabolic/loc1.RData
-2f2f4687d4415cc7c0519df4e57c1f72  UKB-AFR/trans/AFR+EUR/EPHA4:P54764:OID30622:v1:Inflammation_II/loc1.RData
-b0994a0f88496cd48b0418a814061e2b  UKB-AFR/trans/AFR+EUR/F11:P03951:OID30773:v1:Inflammation_II/loc1.RData
-dd73b490a1b6fcbab4081ea903ca6e5b  UKB-AFR/trans/AFR+EUR/FAM171B:Q6P995:OID31338:v1:Oncology_II/loc1.RData
-696762301f89b5384834443b6669e14a  UKB-AFR/trans/AFR+EUR/FAM171B:Q6P995:OID31338:v1:Oncology_II/loc2.RData
-03f5723de119696a1a34dfdae124613c  UKB-AFR/trans/AFR+EUR/FAM3D:Q96BQ1:OID31514:v1:Oncology_II/loc1.RData
-b9ffd71773470b0bde3a03f1e66bdfd3  UKB-AFR/trans/AFR+EUR/FAM3D:Q96BQ1:OID31514:v1:Oncology_II/loc2.RData
-40371b2364107b744f508d3ba8dfef96  UKB-AFR/trans/AFR+EUR/FASLG:P48023:OID20665:v1:Inflammation/loc1.RData
-4a64502e5d58a6256373e88fc78e3510  UKB-AFR/trans/AFR+EUR/FLT1:P17948:OID21301:v1:Oncology/loc1.RData
-b4b22079796f3353b5852f596c9796a7  UKB-AFR/trans/AFR+EUR/FUCA1:P04066:OID20261:v1:Cardiometabolic/loc1.RData
-89428d5b289e8e1d0b82dc01021eee8a  UKB-AFR/trans/AFR+EUR/GALNT2:Q10471:OID21423:v1:Oncology/loc1.RData
-4c71e58755ac4c8da974209f7aeb6090  UKB-AFR/trans/AFR+EUR/GFRAL:Q6UXV0:OID31091:v1:Neurology_II/loc1.RData
-1f5c4156167b1d8257bc170c8a7cca3b  UKB-AFR/trans/AFR+EUR/GP2:P55259:OID20090:v1:Cardiometabolic/loc1.RData
-eb56b5045bf91229b22c60400710ff1c  UKB-AFR/trans/AFR+EUR/GRN:P28799:OID21159:v1:Neurology/loc1.RData
-063f36c4edb7ff110cdea8d28a525072  UKB-AFR/trans/AFR+EUR/HBQ1:P09105:OID21433:v1:Oncology/loc1.RData
-aa3ca2ca1f89a0a6972a92d08622867e  UKB-AFR/trans/AFR+EUR/HEG1:Q9ULI3:OID30579:v1:Inflammation_II/loc1.RData
-de5e15d6787f1f51baf6dfe68e9e276b  UKB-AFR/trans/AFR+EUR/HEPACAM2:A8MVW5:OID31151:v1:Neurology_II/loc1.RData
-b72f35ccbfddaf1d9cfd00342be54e24  UKB-AFR/trans/AFR+EUR/HEPACAM2:A8MVW5:OID31151:v1:Neurology_II/loc2.RData
-21ee73d3303cc511b272f5bd3802199a  UKB-AFR/trans/AFR+EUR/HLA-A:P04439:OID31048:v1:Neurology_II/loc1.RData
-99f54c5696807500f81743ec91d84e59  UKB-AFR/trans/AFR+EUR/ICAM2:P13598:OID20248:v1:Cardiometabolic/loc1.RData
-0d71aab61ea921c374b2839965b245b4  UKB-AFR/trans/AFR+EUR/ICAM5:Q9UMF0:OID20145:v1:Cardiometabolic/loc1.RData
-65ea0e0ea36a8b7a2911a697dd8072e5  UKB-AFR/trans/AFR+EUR/IGFBP3:P17936:OID20398:v1:Cardiometabolic/loc1.RData
-6258278e5e233f45860cce1990418003  UKB-AFR/trans/AFR+EUR/IL19:Q9UHD0:OID20158:v1:Cardiometabolic/loc1.RData
-4128be81d24a06d6548d68538894a2c1  UKB-AFR/trans/AFR+EUR/IL7R:P16871:OID21136:v1:Neurology/loc1.RData
-ea928b9b6c846625000ac73e98fe3121  UKB-AFR/trans/AFR+EUR/ISLR2:Q6UXK2:OID20889:v1:Neurology/loc1.RData
-50e6178bb77a853bb4e2d23d819adf26  UKB-AFR/trans/AFR+EUR/KEL:P23276:OID20881:v1:Neurology/loc1.RData
-413e3a0b8e59ca4bb81381125b6f8b77  UKB-AFR/trans/AFR+EUR/KLB:Q86Z14:OID20888:v1:Neurology/loc1.RData
-643229c8e8cc7384fddc499aab2cc9de  UKB-AFR/trans/AFR+EUR/KLK12:Q9UKR0:OID21201:v1:Oncology/loc1.RData
-dc9611ecfe0bdb51da18a17f7b5c575f  UKB-AFR/trans/AFR+EUR/KLK1:P06870:OID21499:v1:Oncology/loc1.RData
-71669496814019003268026c442c1794  UKB-AFR/trans/AFR+EUR/LDLR:P01130:OID20240:v1:Cardiometabolic/loc1.RData
-3b18a171f2c9047204a633bdf62491e4  UKB-AFR/trans/AFR+EUR/LEG1:Q6P5S2:OID30608:v1:Inflammation_II/loc1.RData
-094e82debb1c3674b6e8319417eed719  UKB-AFR/trans/AFR+EUR/LGALS4:P56470:OID20748:v1:Inflammation/loc1.RData
-be7d9a1a0c4e1bb6f01a5c1d7ea95db2  UKB-AFR/trans/AFR+EUR/LIFR:P42702:OID20606:v1:Inflammation/loc1.RData
-3e749ed701586fb587f14d00f19cdf21  UKB-AFR/trans/AFR+EUR/LPO:P22079:OID20963:v1:Neurology/loc1.RData
-995ddff86740d436cde0ae77861c6930  UKB-AFR/trans/AFR+EUR/LRFN2:Q9ULH4:OID30895:v1:Neurology_II/loc1.RData
-ff509a3051f4c9020d9fac02eea39159  UKB-AFR/trans/AFR+EUR/LRRC37A2:A6NM11:OID31440:v1:Oncology_II/loc1.RData
-678756971c8fa0594b88397efaefab7b  UKB-AFR/trans/AFR+EUR/MENT:Q9BUN1:OID30595:v1:Inflammation_II/loc1.RData
-3625d265aa8879bdcd373c3f280a1de3  UKB-AFR/trans/AFR+EUR/MEP1A:Q16819:OID31459:v1:Oncology_II/loc1.RData
-2f9b73690f8864b5380dbe59347538ca  UKB-AFR/trans/AFR+EUR/MME:P08473:OID21307:v1:Oncology/loc1.RData
-c577c9f63d6acf51dcbd49fd3f19a3bb  UKB-AFR/trans/AFR+EUR/MSR1:P21757:OID21063:v1:Neurology/loc1.RData
-8094e81bd923c3751b852e83902cd87f  UKB-AFR/trans/AFR+EUR/MST1:P26927:OID30713:v1:Inflammation_II/loc1.RData
-b40e3ae9e4904206654df8e4a3759e81  UKB-AFR/trans/AFR+EUR/MST1:P26927:OID30713:v1:Inflammation_II/loc2.RData
-22e06a87b318b71615f5e98ae9987547  UKB-AFR/trans/AFR+EUR/MUC2:Q02817:OID30377:v1:Cardiometabolic_II/loc1.RData
-3fc664231625c026f3c6d261b5419bd1  UKB-AFR/trans/AFR+EUR/MUC2:Q02817:OID30377:v1:Cardiometabolic_II/loc2.RData
-66da1c26566d47cfe9c7a738a3aec8f3  UKB-AFR/trans/AFR+EUR/NOMO1:Q15155:OID21106:v1:Neurology/loc1.RData
-04f6e8d9d80dfe257d36478cdfdce883  UKB-AFR/trans/AFR+EUR/NOTCH1:P46531:OID20311:v1:Cardiometabolic/loc1.RData
-e9b872a7fbbe7c39ff850c8eee218331  UKB-AFR/trans/AFR+EUR/NOTCH2:Q04721:OID30407:v1:Cardiometabolic_II/loc1.RData
-1364d79a832271a0b5e33ef0b934ea1b  UKB-AFR/trans/AFR+EUR/PCDH17:O14917:OID20132:v1:Cardiometabolic/loc1.RData
-e9c62ca106cbfb0be39d84d9ebf6d20b  UKB-AFR/trans/AFR+EUR/PEAR1:Q5VY43:OID20257:v1:Cardiometabolic/loc1.RData
-c9c2ea5ca10c063fc519c325c3319835  UKB-AFR/trans/AFR+EUR/PECAM1:P16284:OID21131:v1:Neurology/loc1.RData
-8ab765ee7c036155d76bf82034fa6255  UKB-AFR/trans/AFR+EUR/PILRA:Q9UKJ1:OID21129:v1:Neurology/loc1.RData
-c80d3d9d87d27ff80c90a72d99133756  UKB-AFR/trans/AFR+EUR/PILRB:Q9UKJ0:OID20197:v1:Cardiometabolic/loc1.RData
-19bb2fd5758d04ac7c1922f32453a7e9  UKB-AFR/trans/AFR+EUR/PLAU:P00749:OID21124:v1:Neurology/loc1.RData
-4e3a97af996be1878da4fc7ba5c91d5f  UKB-AFR/trans/AFR+EUR/PODXL:O00592:OID21358:v1:Oncology/loc1.RData
-291f1dce7f5aaf6ef12c5abdb0efd3bb  UKB-AFR/trans/AFR+EUR/PROC:P04070:OID20402:v1:Cardiometabolic/loc1.RData
-f1aa6892eac21a7670377fb52004725c  UKB-AFR/trans/AFR+EUR/PRSS27:Q9BQR3:OID20212:v1:Cardiometabolic/loc1.RData
-afaae3bf4dd166aab83c495403f250c5  UKB-AFR/trans/AFR+EUR/PRSS27:Q9BQR3:OID20212:v1:Cardiometabolic/loc2.RData
-068ae43bfc9665ebae43f3b2f0967bce  UKB-AFR/trans/AFR+EUR/PTPRB:P23467:OID30324:v1:Cardiometabolic_II/loc1.RData
-602306c42fecb791035fa3ce3f3f996e  UKB-AFR/trans/AFR+EUR/PTPRM:P28827:OID20598:v1:Inflammation/loc1.RData
-edbc8db31e340f57e523ec5ac2e55c9c  UKB-AFR/trans/AFR+EUR/PYDC1:Q8WXC3:OID30202:v1:Cardiometabolic_II/loc1.RData
-541eeb38c718efc083be362b9744e481  UKB-AFR/trans/AFR+EUR/ROBO4:Q8WZ75:OID30226:v1:Cardiometabolic_II/loc1.RData
-aebf005e56c4e06f3c4f09d3d74e7915  UKB-AFR/trans/AFR+EUR/SELE:P16581:OID20290:v1:Cardiometabolic/loc1.RData
-8d1104770d7512e653c5d17c1e23a396  UKB-AFR/trans/AFR+EUR/SELE:P16581:OID20290:v1:Cardiometabolic/loc2.RData
-659e495cb3f2580aafd24a6a14f424e5  UKB-AFR/trans/AFR+EUR/SEMA3G:Q9NS98:OID30599:v1:Inflammation_II/loc1.RData
-b1d2957daf4eea61ec188f800c128495  UKB-AFR/trans/AFR+EUR/SERPIND1:P05546:OID30767:v1:Inflammation_II/loc1.RData
-d564753979950d353797ae9b34df3677  UKB-AFR/trans/AFR+EUR/SERPINI2:O75830:OID31504:v1:Oncology_II/loc1.RData
-1355ad574d965af756f84cc3522c3c75  UKB-AFR/trans/AFR+EUR/SERPINI2:O75830:OID31504:v1:Oncology_II/loc2.RData
-41ae1948d03b779b6c034d2474321ce6  UKB-AFR/trans/AFR+EUR/SMPDL3A:Q92484:OID20676:v1:Inflammation/loc1.RData
-c79d31d7395e4ca65b7d6cf41b09cab0  UKB-AFR/trans/AFR+EUR/SNAP25:P60880:OID30811:v1:Neurology_II/loc1.RData
-42a357cff7d4f20c5d854756e749fa35  UKB-AFR/trans/AFR+EUR/SPINT1:O43278:OID21109:v1:Neurology/loc1.RData
-40ec4ebd83437d24eba4f3bf3488a5c5  UKB-AFR/trans/AFR+EUR/SPINT1:O43278:OID21109:v1:Neurology/loc2.RData
-ed18b84519d60127bc1b13d33ea0b6a2  UKB-AFR/trans/AFR+EUR/STX3:Q13277:OID31090:v1:Neurology_II/loc1.RData
-cbad270073e8f1ada44a83cca61f69a8  UKB-AFR/trans/AFR+EUR/TCN2:P20062:OID20341:v1:Cardiometabolic/loc1.RData
-09c62e0bab0b8898d9d5c714b14316a0  UKB-AFR/trans/AFR+EUR/TEK:Q02763:OID21496:v1:Oncology/loc1.RData
-7eaf29c4ae42b93d026ab27ffa104e26  UKB-AFR/trans/AFR+EUR/TIE1:P35590:OID20303:v1:Cardiometabolic/loc1.RData
-1b8055686530cac572334cf88cfc1013  UKB-AFR/trans/AFR+EUR/TOP1:P11387:OID31449:v1:Oncology_II/loc1.RData
-18d619fe2f3f34723733782c1625a47f  UKB-AFR/trans/AFR+EUR/TREM2:Q9NZC2:OID20731:v1:Inflammation/loc1.RData
-0af0839826b36d1ebceb72142546e8d4  UKB-AFR/trans/AFR+EUR/VSTM2L:Q96N03:OID20067:v1:Cardiometabolic/loc1.RData
-9a0dfda31d0ef966f09489612bd426e7  UKB-AFR/trans/AFR+EUR/VWF:P04275:OID20256:v1:Cardiometabolic/loc1.RData
-462ac599b6b9a9f93cca03725ebcea46  UKB-AFR/trans/AFR/ADAM15:Q13444:OID20109:v1:Cardiometabolic/loc1.RData
-de6d4553f9f216d9f0a094c91db4f089  UKB-AFR/trans/AFR/ADGRE1:Q14246:OID31483:v1:Oncology_II/loc1.RData
-2f725e38e2dac12b99274df6439408d0  UKB-AFR/trans/AFR/AHSP:Q9NZD4:OID21078:v1:Neurology/loc1.RData
-0e008c3bce71f1ec6cdd0456c791abd1  UKB-AFR/trans/AFR/ALPI:P09923:OID30497:v1:Inflammation_II/loc1.RData
-da4d1a0608e011fba074b0314da48681  UKB-AFR/trans/AFR/ALPI:P09923:OID30497:v1:Inflammation_II/loc2.RData
-8f3e4d4be9ff79ab7312dd277af86b69  UKB-AFR/trans/AFR/APOF:Q13790:OID30701:v1:Inflammation_II/loc1.RData
-a7550eb13dacc0fe8d50453a83128323  UKB-AFR/trans/AFR/APOF:Q13790:OID30701:v1:Inflammation_II/loc2.RData
-dbe9421b9b4772717c35e3d300d0a3d4  UKB-AFR/trans/AFR/ARHGAP1:Q07960:OID21202:v1:Oncology/loc1.RData
-8393cf5d7238aaaad59aa17dfb5eb999  UKB-AFR/trans/AFR/ARNT:P27540:OID20432:v1:Inflammation/loc1.RData
-f147280ea657aebb47151396fd8dc69e  UKB-AFR/trans/AFR/BAMBI:Q13145:OID21267:v1:Oncology/loc1.RData
-b1832d75918864c3ede1ef85752e8fdb  UKB-AFR/trans/AFR/BCAM:P50895:OID21076:v1:Neurology/loc1.RData
-e050ed32a67c9b565ac8256ea9673a28  UKB-AFR/trans/AFR/CCL11:P51671:OID20668:v1:Inflammation/loc1.RData
-b8b40bca128e04190de9149e8c68732a  UKB-AFR/trans/AFR/CCL14:Q16627:OID20401:v1:Cardiometabolic/loc1.RData
-0f98694bf00ebc9c96985e32c70327a0  UKB-AFR/trans/AFR/CCL25:O15444:OID20674:v1:Inflammation/loc1.RData
-01bd973529eaba1f27e5ac35b7c0ebb9  UKB-AFR/trans/AFR/CCL2:P13500:OID21004:v1:Neurology/loc1.RData
-a0c3e52c2265fa7167e08da75bdf085a  UKB-AFR/trans/AFR/CCL7:P80098:OID20523:v1:Inflammation/loc1.RData
-58526dc69fac8d11a3566b96777dbd3e  UKB-AFR/trans/AFR/CD163:Q86VB7:OID20360:v1:Cardiometabolic/loc1.RData
-e9ff73ff0c8a22f83477cebf4ba87d66  UKB-AFR/trans/AFR/CD209:Q9NNX6:OID20262:v1:Cardiometabolic/loc1.RData
-530f8b28fba74a9561237888240c1c4a  UKB-AFR/trans/AFR/CD300A:Q9UGN4:OID30576:v1:Inflammation_II/loc1.RData
-7a680afbe1341099cf07137ac4d4403d  UKB-AFR/trans/AFR/CD70:P32970:OID20599:v1:Inflammation/loc1.RData
-a36ab2f77d0e6d31152797818dc6b424  UKB-AFR/trans/AFR/CD86:P42081:OID31500:v1:Oncology_II/loc1.RData
-5974429e2c2ec2396dcb40ac5caa457a  UKB-AFR/trans/AFR/CDH17:Q12864:OID20134:v1:Cardiometabolic/loc1.RData
-72c11f142a4d4a2a4de26abf81cb8df8  UKB-AFR/trans/AFR/CDH17:Q12864:OID20134:v1:Cardiometabolic/loc2.RData
-090d2092c7f33a7003a4a38bfac25d00  UKB-AFR/trans/AFR/CDH1:P12830:OID20353:v1:Cardiometabolic/loc1.RData
-f1b412c73050ed3eb1e4ed1ebc29641b  UKB-AFR/trans/AFR/CDH1:P12830:OID20353:v1:Cardiometabolic/loc2.RData
-88227f4413313e09b69d425efb0b0633  UKB-AFR/trans/AFR/CDH5:P33151:OID20243:v1:Cardiometabolic/loc1.RData
-a05f3893a48f691d3ce9493dbd18522c  UKB-AFR/trans/AFR/CEACAM5:P06731:OID21171:v1:Oncology/loc1.RData
-937fef4033ac74ed3ecbb1848d545eb2  UKB-AFR/trans/AFR/CLEC1A:Q8NC01:OID20099:v1:Cardiometabolic/loc1.RData
-9e2e26b96114bc9ec182493c675c0264  UKB-AFR/trans/AFR/CLEC4M:Q9H2X3:OID30405:v1:Cardiometabolic_II/loc1.RData
-505401318a6d4ca9ab4f92d05279b12f  UKB-AFR/trans/AFR/CRISP3:P54108:OID30715:v1:Inflammation_II/loc1.RData
-1155d53d1127c54889a7688fa5ca7eac  UKB-AFR/trans/AFR/CRTAC1:Q9NQ79:OID20279:v1:Cardiometabolic/loc1.RData
-a799f9b73aa70b3bcde7dffbc27d091b  UKB-AFR/trans/AFR/CTRC:Q99895:OID20752:v1:Inflammation/loc1.RData
-9b2aff1b12fd1385bd6a261d5444a43d  UKB-AFR/trans/AFR/CUZD1:Q86UP6:OID30914:v1:Neurology_II/loc1.RData
-e2d71f42691d0fb9965fd97bdaf81f98  UKB-AFR/trans/AFR/CXCL16:Q9H2A7:OID20282:v1:Cardiometabolic/loc1.RData
-0bbcbc48676769cbf9ba7b7ed3e2979a  UKB-AFR/trans/AFR/DPEP2:Q9H4A9:OID21305:v1:Oncology/loc1.RData
-c50c313e9879ea8474cce21a880865ac  UKB-AFR/trans/AFR/DSG2:Q14126:OID21113:v1:Neurology/loc1.RData
-fdb34179440635b62dc457ee785bd211  UKB-AFR/trans/AFR/DYNLT1:P63172:OID30925:v1:Neurology_II/loc1.RData
-34c87734b251d0f5ca2d240c09eb0c6d  UKB-AFR/trans/AFR/ELOB:Q15370:OID30127:v1:Cardiometabolic_II/loc1.RData
-29d71695fb6bcf22100d3e37919e2947  UKB-AFR/trans/AFR/ENG:P17813:OID20287:v1:Cardiometabolic/loc1.RData
-5aa903668e9b51dbcc7bac4b849ef8cc  UKB-AFR/trans/AFR/EPHA4:P54764:OID30622:v1:Inflammation_II/loc1.RData
-67fa4da3ffef8c186bce11e596ed81f7  UKB-AFR/trans/AFR/F11:P03951:OID30773:v1:Inflammation_II/loc1.RData
-a6fc83ceb135084eed45ea7b4860d69b  UKB-AFR/trans/AFR/FAM171B:Q6P995:OID31338:v1:Oncology_II/loc1.RData
-4737372339caa797d9f24b4b76aeff23  UKB-AFR/trans/AFR/FAM171B:Q6P995:OID31338:v1:Oncology_II/loc2.RData
-f70d471579a601c36dcb5261f8e023be  UKB-AFR/trans/AFR/FAM3D:Q96BQ1:OID31514:v1:Oncology_II/loc1.RData
-f52f5e76f4a4b923a856f4f4ba7302c6  UKB-AFR/trans/AFR/FAM3D:Q96BQ1:OID31514:v1:Oncology_II/loc2.RData
-fdb536c588e1d8c47c14e5ad1635c1db  UKB-AFR/trans/AFR/FASLG:P48023:OID20665:v1:Inflammation/loc1.RData
-c25c120a29b20ebf1695e07c1afdc275  UKB-AFR/trans/AFR/FLT1:P17948:OID21301:v1:Oncology/loc1.RData
-74a30d14a0864dba36d1365c8f3aef59  UKB-AFR/trans/AFR/FUCA1:P04066:OID20261:v1:Cardiometabolic/loc1.RData
-0ab4c70734014945dccb7edbfbef59c2  UKB-AFR/trans/AFR/GALNT2:Q10471:OID21423:v1:Oncology/loc1.RData
-97bf2a99bd08edf0f5bc007c60762294  UKB-AFR/trans/AFR/GFRAL:Q6UXV0:OID31091:v1:Neurology_II/loc1.RData
-e3673bcf691469bb732da03f2c5bcf35  UKB-AFR/trans/AFR/GP2:P55259:OID20090:v1:Cardiometabolic/loc1.RData
-da0a739a3259e42c982401be8912c4af  UKB-AFR/trans/AFR/GRN:P28799:OID21159:v1:Neurology/loc1.RData
-b8a01b555fe4fa516ab41808b1c0c996  UKB-AFR/trans/AFR/HBQ1:P09105:OID21433:v1:Oncology/loc1.RData
-8b16fb20283807480cf182fe8ac09743  UKB-AFR/trans/AFR/HEG1:Q9ULI3:OID30579:v1:Inflammation_II/loc1.RData
-fa06adbcf18a497b572d6356c3e979b4  UKB-AFR/trans/AFR/HEPACAM2:A8MVW5:OID31151:v1:Neurology_II/loc1.RData
-0f374d6aa007cc821fc72a38d3fb0c63  UKB-AFR/trans/AFR/HEPACAM2:A8MVW5:OID31151:v1:Neurology_II/loc2.RData
-4c88fc2a2e2250033cdf396ebcea9d31  UKB-AFR/trans/AFR/HLA-A:P04439:OID31048:v1:Neurology_II/loc1.RData
-95aec850d42d763f6b1c1dae35cd09a1  UKB-AFR/trans/AFR/ICAM2:P13598:OID20248:v1:Cardiometabolic/loc1.RData
-7203fcbe99e933a465da48f84c94f163  UKB-AFR/trans/AFR/ICAM5:Q9UMF0:OID20145:v1:Cardiometabolic/loc1.RData
-234e8a2ba57e8e7770b5d636f2235728  UKB-AFR/trans/AFR/IGFBP3:P17936:OID20398:v1:Cardiometabolic/loc1.RData
-de848d862d5922c92820c0cf3aa51979  UKB-AFR/trans/AFR/IL19:Q9UHD0:OID20158:v1:Cardiometabolic/loc1.RData
-c0a58629ffd05decb3537f704db130ee  UKB-AFR/trans/AFR/IL7R:P16871:OID21136:v1:Neurology/loc1.RData
-40f660d8c0b28efb782c67a7269236e9  UKB-AFR/trans/AFR/ISLR2:Q6UXK2:OID20889:v1:Neurology/loc1.RData
-e0a11dd9c924591063c1f76edf5272c0  UKB-AFR/trans/AFR/KEL:P23276:OID20881:v1:Neurology/loc1.RData
-4d8fc58fa8a961498247f76123222ab2  UKB-AFR/trans/AFR/KLB:Q86Z14:OID20888:v1:Neurology/loc1.RData
-643229c8e8cc7384fddc499aab2cc9de  UKB-AFR/trans/AFR/KLK12:Q9UKR0:OID21201:v1:Oncology/loc1.RData
-bc8cf9f5719faf456692838d641a905b  UKB-AFR/trans/AFR/KLK1:P06870:OID21499:v1:Oncology/loc1.RData
-fd2c3249e7d12ce4a3304a5ee5998c6b  UKB-AFR/trans/AFR/LDLR:P01130:OID20240:v1:Cardiometabolic/loc1.RData
-81395a3a335760d17a25eb13d03a7a43  UKB-AFR/trans/AFR/LEG1:Q6P5S2:OID30608:v1:Inflammation_II/loc1.RData
-ed78c6929e42a2ccc1a3df2e9760bd3c  UKB-AFR/trans/AFR/LGALS4:P56470:OID20748:v1:Inflammation/loc1.RData
-f43e2648d30ff54f7452d661eb16ca4d  UKB-AFR/trans/AFR/LIFR:P42702:OID20606:v1:Inflammation/loc1.RData
-e1198a25b4842084502a9da313d381eb  UKB-AFR/trans/AFR/LPO:P22079:OID20963:v1:Neurology/loc1.RData
-995ddff86740d436cde0ae77861c6930  UKB-AFR/trans/AFR/LRFN2:Q9ULH4:OID30895:v1:Neurology_II/loc1.RData
-4762f0e8d9bb27bf2f33939d49bf61eb  UKB-AFR/trans/AFR/LRRC37A2:A6NM11:OID31440:v1:Oncology_II/loc1.RData
-9424a4ea9ceddab8e3f430d9288bde16  UKB-AFR/trans/AFR/MENT:Q9BUN1:OID30595:v1:Inflammation_II/loc1.RData
-0ed26cd2d2df25f3dac2216af8f44f88  UKB-AFR/trans/AFR/MEP1A:Q16819:OID31459:v1:Oncology_II/loc1.RData
-8dcc8654f769ad39aa854ae809102a10  UKB-AFR/trans/AFR/MME:P08473:OID21307:v1:Oncology/loc1.RData
-5cdd8f1cd98cb57c893436441bc8619b  UKB-AFR/trans/AFR/MSR1:P21757:OID21063:v1:Neurology/loc1.RData
-074d2bfaa8dde12c06fab2280b55ee54  UKB-AFR/trans/AFR/MST1:P26927:OID30713:v1:Inflammation_II/loc1.RData
-ef6c4867c48dd05ae74769969384b362  UKB-AFR/trans/AFR/MST1:P26927:OID30713:v1:Inflammation_II/loc2.RData
-13f7b3c2ccace89cd77a4c968b13b113  UKB-AFR/trans/AFR/MUC2:Q02817:OID30377:v1:Cardiometabolic_II/loc1.RData
-0748693e280103db4aa5124e03556aa0  UKB-AFR/trans/AFR/MUC2:Q02817:OID30377:v1:Cardiometabolic_II/loc2.RData
-dea99dad474b03d25a09d472e99074b1  UKB-AFR/trans/AFR/NOMO1:Q15155:OID21106:v1:Neurology/loc1.RData
-a293614c7e4829745a08343abbfef7d5  UKB-AFR/trans/AFR/NOTCH1:P46531:OID20311:v1:Cardiometabolic/loc1.RData
-4ed1dfd30b28ca9961f7fcb98ae9d97d  UKB-AFR/trans/AFR/NOTCH2:Q04721:OID30407:v1:Cardiometabolic_II/loc1.RData
-4e48652e6be51259b9afaf906a73cef4  UKB-AFR/trans/AFR/PCDH17:O14917:OID20132:v1:Cardiometabolic/loc1.RData
-98abeae9aec796a7b27278e0543eb1a7  UKB-AFR/trans/AFR/PEAR1:Q5VY43:OID20257:v1:Cardiometabolic/loc1.RData
-9967b0e38c77fb1c8af7654bbedf5af0  UKB-AFR/trans/AFR/PECAM1:P16284:OID21131:v1:Neurology/loc1.RData
-91bfd35d48762643fd6264d9e96c9acf  UKB-AFR/trans/AFR/PILRA:Q9UKJ1:OID21129:v1:Neurology/loc1.RData
-d818a91e4d41e6d3e6ffb8361a62916c  UKB-AFR/trans/AFR/PILRB:Q9UKJ0:OID20197:v1:Cardiometabolic/loc1.RData
-018d2a555e352c108aa2b7e733622d57  UKB-AFR/trans/AFR/PLAU:P00749:OID21124:v1:Neurology/loc1.RData
-6434ab84f5188d3446909086c4831c2d  UKB-AFR/trans/AFR/PODXL:O00592:OID21358:v1:Oncology/loc1.RData
-3966d267ea4b84549f0bd153af8b617a  UKB-AFR/trans/AFR/PROC:P04070:OID20402:v1:Cardiometabolic/loc1.RData
-ecfb0ecf9d0f3165745be24396d4ff02  UKB-AFR/trans/AFR/PRSS27:Q9BQR3:OID20212:v1:Cardiometabolic/loc1.RData
-b030814576553a29fa7b96d48e832028  UKB-AFR/trans/AFR/PRSS27:Q9BQR3:OID20212:v1:Cardiometabolic/loc2.RData
-95ee81c90d1e0f49d33004dad62645f4  UKB-AFR/trans/AFR/PTPRB:P23467:OID30324:v1:Cardiometabolic_II/loc1.RData
-4a25557017860f07a1ab4407e40d1a9a  UKB-AFR/trans/AFR/PTPRM:P28827:OID20598:v1:Inflammation/loc1.RData
-59f197dd8bd8cca35b0267efb0a1b05c  UKB-AFR/trans/AFR/PYDC1:Q8WXC3:OID30202:v1:Cardiometabolic_II/loc1.RData
-a24fe429e5250d954ef3a2acd29a523b  UKB-AFR/trans/AFR/ROBO4:Q8WZ75:OID30226:v1:Cardiometabolic_II/loc1.RData
-519fde13b5e7685e13a981f870efdc64  UKB-AFR/trans/AFR/SELE:P16581:OID20290:v1:Cardiometabolic/loc1.RData
-723fa4cc4664779a43e88a8806ce23eb  UKB-AFR/trans/AFR/SELE:P16581:OID20290:v1:Cardiometabolic/loc2.RData
-ab4415f45464d518c8d728a2d1503800  UKB-AFR/trans/AFR/SEMA3G:Q9NS98:OID30599:v1:Inflammation_II/loc1.RData
-474178556c4c461521c920f700b44fa4  UKB-AFR/trans/AFR/SERPIND1:P05546:OID30767:v1:Inflammation_II/loc1.RData
-60307f09cad3ad7b1726d09f5738a0c2  UKB-AFR/trans/AFR/SERPINI2:O75830:OID31504:v1:Oncology_II/loc1.RData
-62cca7718bcea8ece0feca9868b69334  UKB-AFR/trans/AFR/SERPINI2:O75830:OID31504:v1:Oncology_II/loc2.RData
-3e15736ccea4226327d24b42997de861  UKB-AFR/trans/AFR/SMPDL3A:Q92484:OID20676:v1:Inflammation/loc1.RData
-f92c86827e4ab540d53b58665636a30c  UKB-AFR/trans/AFR/SNAP25:P60880:OID30811:v1:Neurology_II/loc1.RData
-78de370319f8684edd7987d1246df8a1  UKB-AFR/trans/AFR/SPINT1:O43278:OID21109:v1:Neurology/loc1.RData
-4e81b784ae61a70f788453b0841db5f9  UKB-AFR/trans/AFR/SPINT1:O43278:OID21109:v1:Neurology/loc2.RData
-9a7e45e1d3a5ea0567df18d5a7c20d57  UKB-AFR/trans/AFR/STX3:Q13277:OID31090:v1:Neurology_II/loc1.RData
-7f0925079fc6b4f93bf9421125f82da4  UKB-AFR/trans/AFR/TCN2:P20062:OID20341:v1:Cardiometabolic/loc1.RData
-b1debbcfd29c78a1d4f26fdf36367e42  UKB-AFR/trans/AFR/TEK:Q02763:OID21496:v1:Oncology/loc1.RData
-db428e0154d0f02edaeaa1ebfe132f51  UKB-AFR/trans/AFR/TIE1:P35590:OID20303:v1:Cardiometabolic/loc1.RData
-19d282a5257bd96d08aa87699109b756  UKB-AFR/trans/AFR/TOP1:P11387:OID31449:v1:Oncology_II/loc1.RData
-85b7598f9f7a2ec09e385520854c7ed5  UKB-AFR/trans/AFR/TREM2:Q9NZC2:OID20731:v1:Inflammation/loc1.RData
-48696013d6d1d343d8272e8925c204e6  UKB-AFR/trans/AFR/VSTM2L:Q96N03:OID20067:v1:Cardiometabolic/loc1.RData
-8c48a4c9b42cc76f219b84ce803430c8  UKB-AFR/trans/AFR/VWF:P04275:OID20256:v1:Cardiometabolic/loc1.RData
 258248563d750ca5a3c67ef149655f0f  UKB-EUR/CisTrans/A1BG.RData
 53ab1b15d09e1669fb3beba2720ef8ad  UKB-EUR/CisTrans/AAMDC.RData
 4152f7963cc15f95112ba871e8cf9311  UKB-EUR/CisTrans/AARSD1.RData

 258248563d750ca5a3c67ef149655f0f  UKB-EUR/CisTrans/A1BG.RData
 53ab1b15d09e1669fb3beba2720ef8ad  UKB-EUR/CisTrans/AAMDC.RData
 4152f7963cc15f95112ba871e8cf9311  UKB-EUR/CisTrans/AARSD1.RData

README.md CHANGED Viewed

@@ -12,26 +12,22 @@ tags:
 # PRISM-models
-Protein imputation models trained on UK Biobank Pharma Proteomics Project (UKB-PPP, Olink) data, for
-protein-wide association studies with GWAS summary statistics. Each model holds SNP weights, the
-per-SNP association table, and the reference LD matrix.
 **Version 2026-10-09** (all trans loci retrained, see below).
-| path | ancestry | what one file is | count |
-|---|---|---|---|
-| `UKB-EUR/CisTrans/<protein>.RData` | European | one protein: its cis locus + all its trans loci, merged | 2,877 proteins (2,063 cis + trans, 739 cis only, 75 trans only; 12,197 trans loci) |
-| `UKB-AFR/trans/AFR/<CASE>/loc<N>.RData` | African | one trans locus, AFR-only model (6+0) | 117 loci in 104 proteins |
-| `UKB-AFR/trans/AFR+EUR/<CASE>/loc<N>.RData` | African | the same locus, AFR + EUR transfer model (6+6) | 117 |
-`<protein>` is the Olink assay symbol; `CASE` is the UKB-PPP id `Gene:UniProt:OID:v1:Panel`. Seven AFR
-loci are `trained = FALSE` placeholders: they share no SNP with any EUR trans locus, or their protein has
-no EUR trans model.
 ## What changed in this version
-1. **Effect allele fixed; all 12,197 UKB-EUR trans loci retrained.** In our GWAS (PLINK 1.9 `--assoc` on
-   all 52,253 participants), BETA refers to the minor allele of the full sample. The `A1`/`A2` labels,
    however, came from a frequency run restricted to each measurement batch, where PLINK re-picks the
    minor allele. For variants with MAF ≈ 0.48–0.5 the two disagree, so `A1` named the wrong allele in
    280,588 table rows (at least one such variant in 11,433 loci). Labels now come from the genotype
@@ -40,8 +36,6 @@ no EUR trans model.
    were never affected.
 2. **PPP1R12A trans locus 2 is now included.** A transient file-system error had silently skipped it.
 3. **GRCh38 positions added.** `ss` has a `POS.38` (GRCh38) column next to `BP` (GRCh37).
-4. **AFR trans models retrained** against the corrected EUR models, which act as the exterior members
-   of the 6+6 transfer model.
 Already in the previous release and kept here: trans loci are at most 3 Mb wide, cut to ± 1.5 Mb around
 the lead SNP (largest |Z|). Positions come from the repaired GRCh38 rsID map (1,726 rows of the UKB-PPP
@@ -49,24 +43,19 @@ release had lifted to another chromosome).
 ## How the models were built
-- **EUR trans loci.** We ran the pQTL GWAS ourselves on individual-level UKB-PPP data: 2,923 proteins,
   residualised phenotypes. Trans SNPs have P < 5e-8 / 2,923 and lie outside the gene ± 1 Mb; the MHC is
   removed. The SNPs are clumped against 1000 Genomes EUR and merged into loci on GRCh38. Each locus is
   trained as a SUMMIT ensemble (ElNet, LASSO, MCP, MNet, SCAD at six clumping levels
   r² ∈ {0.01, 0.05, 0.1, 0.2, 0.5, 0.9}, with PUMAS subsampling), combined into one omnibus weight. LD
   comes from 49,341 UK Biobank EUR individuals.
-- **EUR cis.** These are the BLISS UKB cis models for 2,802 proteins. Cis and trans loci are merged
   block-diagonally; a SNP that appears in several loci is kept in the first one only (cis first).
-- **AFR trans loci.** The loci come from the UKB-PPP AFR summary statistics, clumped against
-  1000 Genomes AFR. Each locus gets six local elastic nets (one per clumping level), trained on about
-  1,100 AFR individuals with genotypes and phenotypes. These are stacked by NNLS, either alone (6+0) or
-  together with the six members of the EUR trans model matched by rsID (6+6). Over the 110 trained loci,
-  mean held-out R² is 0.077 for the 6+6 models and 0.079 for 6+0, so we ship both.
 ## File contents
-**`UKB-EUR/CisTrans`.** These files use a slim format: only the upper triangle of the LD matrix is
-stored. Load them with `load-model-slim.r`.
 | object | content |
 |---|---|
@@ -80,25 +69,11 @@ the locus's PUMAS R² (the same for every SNP in a locus), so a protein's total
 In 14 files, tagged `uppertri-v1-sym`, the full LD matrix differed from its transpose by a few ULP. Their
 upper triangle is stored as is and mirrored on load.
-**`UKB-AFR/trans`.** These files store the full `matrix.LD`; load them with plain `load()`.
-| object | content |
-|---|---|
-| `weight` | member weights, S × 6 (AFR) or S × 12 (AFR+EUR) |
-| `CHECKED` | `alpha` (NNLS stacking weight), `robust`, `used`; omnibus weight = `weight %*% CHECKED$alpha` |
-| `ss` | `SNP ID CHR POS.38 BP A1 A2 MAF BETA SE P N CIS LOCI POP Z` |
-| `matrix.LD` | LD matrix, AFR reference |
-| `R2.PUMAS`, `cv.performance` | held-out R² |
-| other | `trained protein CASE POP LOCI CHR cis batch N.train eur.loci CLUMPING eur.overlay eur.loci.overlay` |
 ## Loading (R)
 ```r
 source("load-model-slim.r")
 m <- load_model_slim("UKB-EUR/CisTrans/A1BG.RData")   # m$weight, m$ss, m$matrix.LD (rebuilt)
-e <- new.env()
-load("UKB-AFR/trans/AFR+EUR/VWF:P04275:OID20256:v1:Cardiometabolic/loc1.RData", envir = e)
 ```
 `MANIFEST.md5` lists the md5 of every model file; check it with `md5sum -c MANIFEST.md5`.

 # PRISM-models
+Protein imputation models trained on UK Biobank Pharma Proteomics Project (UKB-PPP, Olink) data from
+European-ancestry participants, for protein-wide association studies with GWAS summary statistics.
+Each model holds SNP weights, the per-SNP association table, and the reference LD matrix.
 **Version 2026-10-09** (all trans loci retrained, see below).
+| path | what one file is | count |
+|---|---|---|
+| `UKB-EUR/CisTrans/<protein>.RData` | one protein: its cis locus + all its trans loci, merged | 2,877 proteins (2,063 cis + trans, 739 cis only, 75 trans only; 12,197 trans loci) |
+`<protein>` is the Olink assay symbol.
 ## What changed in this version
+1. **Effect allele fixed; all 12,197 trans loci retrained.** In our GWAS (PLINK 1.9 `--assoc` on all
+   52,253 participants), BETA refers to the minor allele of the full sample. The `A1`/`A2` labels,
    however, came from a frequency run restricted to each measurement batch, where PLINK re-picks the
    minor allele. For variants with MAF ≈ 0.48–0.5 the two disagree, so `A1` named the wrong allele in
    280,588 table rows (at least one such variant in 11,433 loci). Labels now come from the genotype
    were never affected.
 2. **PPP1R12A trans locus 2 is now included.** A transient file-system error had silently skipped it.
 3. **GRCh38 positions added.** `ss` has a `POS.38` (GRCh38) column next to `BP` (GRCh37).
 Already in the previous release and kept here: trans loci are at most 3 Mb wide, cut to ± 1.5 Mb around
 the lead SNP (largest |Z|). Positions come from the repaired GRCh38 rsID map (1,726 rows of the UKB-PPP
 ## How the models were built
+- **Trans loci.** We ran the pQTL GWAS ourselves on individual-level UKB-PPP data: 2,923 proteins,
   residualised phenotypes. Trans SNPs have P < 5e-8 / 2,923 and lie outside the gene ± 1 Mb; the MHC is
   removed. The SNPs are clumped against 1000 Genomes EUR and merged into loci on GRCh38. Each locus is
   trained as a SUMMIT ensemble (ElNet, LASSO, MCP, MNet, SCAD at six clumping levels
   r² ∈ {0.01, 0.05, 0.1, 0.2, 0.5, 0.9}, with PUMAS subsampling), combined into one omnibus weight. LD
   comes from 49,341 UK Biobank EUR individuals.
+- **Cis loci.** These are the BLISS UKB cis models for 2,802 proteins. Cis and trans loci are merged
   block-diagonally; a SNP that appears in several loci is kept in the first one only (cis first).
 ## File contents
+The files use a slim format: only the upper triangle of the LD matrix is stored. Load them with
+`load-model-slim.r`.
 | object | content |
 |---|---|
 In 14 files, tagged `uppertri-v1-sym`, the full LD matrix differed from its transpose by a few ULP. Their
 upper triangle is stored as is and mirrored on load.
 ## Loading (R)
 ```r
 source("load-model-slim.r")
 m <- load_model_slim("UKB-EUR/CisTrans/A1BG.RData")   # m$weight, m$ss, m$matrix.LD (rebuilt)
 ```
 `MANIFEST.md5` lists the md5 of every model file; check it with `md5sum -c MANIFEST.md5`.

UKB-AFR/trans/AFR+EUR/ADAM15:Q13444:OID20109:v1:Cardiometabolic/loc1.RData DELETED Viewed

Binary file (96.7 kB)

UKB-AFR/trans/AFR+EUR/ADGRE1:Q14246:OID31483:v1:Oncology_II/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:907134556103b7c9b0030c43467c79c789678699f3f5c50d4e19150c31b6a1c5
-size 202180

UKB-AFR/trans/AFR+EUR/AHSP:Q9NZD4:OID21078:v1:Neurology/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:5cb483199d0d6a8880df3009ff0f5e5da525b8ee711555ab223e424c939fc6c4
-size 424192

UKB-AFR/trans/AFR+EUR/ALPI:P09923:OID30497:v1:Inflammation_II/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:c7054d8bcfd4b1d5e62ab31ab55cfc591951900f9a005967bb428cf741f4a7dd
-size 190828

UKB-AFR/trans/AFR+EUR/ALPI:P09923:OID30497:v1:Inflammation_II/loc2.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:e17b85024d65ad41ba65a51bad6c7e5b2f49a89b845be5f1c449c4734b342cb1
-size 172202

UKB-AFR/trans/AFR+EUR/APOF:Q13790:OID30701:v1:Inflammation_II/loc1.RData DELETED Viewed

Binary file (264 Bytes)

UKB-AFR/trans/AFR+EUR/APOF:Q13790:OID30701:v1:Inflammation_II/loc2.RData DELETED Viewed

Binary file (264 Bytes)

UKB-AFR/trans/AFR+EUR/ARHGAP1:Q07960:OID21202:v1:Oncology/loc1.RData DELETED Viewed

Binary file (59.8 kB)

UKB-AFR/trans/AFR+EUR/ARNT:P27540:OID20432:v1:Inflammation/loc1.RData DELETED Viewed

Binary file (260 Bytes)

UKB-AFR/trans/AFR+EUR/BAMBI:Q13145:OID21267:v1:Oncology/loc1.RData DELETED Viewed

Binary file (257 Bytes)

UKB-AFR/trans/AFR+EUR/BCAM:P50895:OID21076:v1:Neurology/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:2ac3212d1e535d199e08d1c4127141ef08394a514deb3e516c9c1f259fce9fbf
-size 210234

UKB-AFR/trans/AFR+EUR/CCL11:P51671:OID20668:v1:Inflammation/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:a517caa64065503e28715f27fa8f74c3960983a7e94b67fabf29b88a92ab0f07
-size 178465

UKB-AFR/trans/AFR+EUR/CCL14:Q16627:OID20401:v1:Cardiometabolic/loc1.RData DELETED Viewed

Binary file (19.9 kB)

UKB-AFR/trans/AFR+EUR/CCL25:O15444:OID20674:v1:Inflammation/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:b379d0529f8b7cc3693dfb4dc0dea628293048d3da77afa3ba002f2cde608b31
-size 251409

UKB-AFR/trans/AFR+EUR/CCL2:P13500:OID21004:v1:Neurology/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:5e0a1f3a053a822bf492bc6e0d50db98ce4af0c4468a725ba4e0e42a2f752d1a
-size 195303

UKB-AFR/trans/AFR+EUR/CCL7:P80098:OID20523:v1:Inflammation/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:5889ed3aa20fcf31a4be9e1d3c83793e57f50dfe7d0632691f87ffd2c70461ee
-size 100162

UKB-AFR/trans/AFR+EUR/CD163:Q86VB7:OID20360:v1:Cardiometabolic/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:83bb0fc533a38874439f4db90a2c49f4e60830eb2e7555bd9cf519622bcbf5bc
-size 330570

UKB-AFR/trans/AFR+EUR/CD209:Q9NNX6:OID20262:v1:Cardiometabolic/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:6f33b4b93e93ef0ee01ca6449011a50df205470d03648c8a9e3dcfc868a2d331
-size 800553

UKB-AFR/trans/AFR+EUR/CD300A:Q9UGN4:OID30576:v1:Inflammation_II/loc1.RData DELETED Viewed

Binary file (86.3 kB)

UKB-AFR/trans/AFR+EUR/CD70:P32970:OID20599:v1:Inflammation/loc1.RData DELETED Viewed

Binary file (15.4 kB)

UKB-AFR/trans/AFR+EUR/CD86:P42081:OID31500:v1:Oncology_II/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:60c79ffadf72e1c123c196a6f9175488521b38753c74e43c07135c8004e94e84
-size 254273

UKB-AFR/trans/AFR+EUR/CDH17:Q12864:OID20134:v1:Cardiometabolic/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:3fdf814e4ec6e4d5337be1340f8fca8682e18e15b5bf4515cde56999cacd9c4a
-size 370276

UKB-AFR/trans/AFR+EUR/CDH17:Q12864:OID20134:v1:Cardiometabolic/loc2.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:e3d106fe1256e348e9f5fc18c12e7c9f2f0f7760fec4d13ad411cdef900ea674
-size 538999

UKB-AFR/trans/AFR+EUR/CDH1:P12830:OID20353:v1:Cardiometabolic/loc1.RData DELETED Viewed

Binary file (61.1 kB)

UKB-AFR/trans/AFR+EUR/CDH1:P12830:OID20353:v1:Cardiometabolic/loc2.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:a25d4c8b1ad340fad84cd4a993d5c60d5aab73b8047edec0fa5aa5bb9120b8c6
-size 116108

UKB-AFR/trans/AFR+EUR/CDH5:P33151:OID20243:v1:Cardiometabolic/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:c3c6eb064c5d478494f19c17efc132e479c03fb9ad12d94c458aeff4ada9e9e5
-size 531342

UKB-AFR/trans/AFR+EUR/CEACAM5:P06731:OID21171:v1:Oncology/loc1.RData DELETED Viewed

Binary file (7.17 kB)

UKB-AFR/trans/AFR+EUR/CLEC1A:Q8NC01:OID20099:v1:Cardiometabolic/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:655bf5f186561882467a6b8c7d475d0d750dfd2605a2b49705d6fdc9a48a19cc
-size 334112

UKB-AFR/trans/AFR+EUR/CLEC4M:Q9H2X3:OID30405:v1:Cardiometabolic_II/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:b113663c0c03aed28a68c7092e4fd316bedce4ee3dcf29611cfb303d82a4b5b5
-size 464224

UKB-AFR/trans/AFR+EUR/CRISP3:P54108:OID30715:v1:Inflammation_II/loc1.RData DELETED Viewed

Binary file (10 kB)

UKB-AFR/trans/AFR+EUR/CRTAC1:Q9NQ79:OID20279:v1:Cardiometabolic/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:d8370c71bbe46a49b10f83875434cdf463290c288bf75851556b1a77dcada649
-size 175209

UKB-AFR/trans/AFR+EUR/CTRC:Q99895:OID20752:v1:Inflammation/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:2906b541937872b9c3fd0f05974305cdec410deda2f6ce41599aa97a3205ce8d
-size 157699

UKB-AFR/trans/AFR+EUR/CUZD1:Q86UP6:OID30914:v1:Neurology_II/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:87c2ba1197ab7bf185eb87268c55c49cd8c4f58f817e83514d8ac871bbb681bf
-size 1027514

UKB-AFR/trans/AFR+EUR/CXCL16:Q9H2A7:OID20282:v1:Cardiometabolic/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:91376989f357cc78a2444d27f7eb6f414e35695ebee146d1fc65ff8c70dcf2f6
-size 466963

UKB-AFR/trans/AFR+EUR/DPEP2:Q9H4A9:OID21305:v1:Oncology/loc1.RData DELETED Viewed

Binary file (17.7 kB)

UKB-AFR/trans/AFR+EUR/DSG2:Q14126:OID21113:v1:Neurology/loc1.RData DELETED Viewed

Binary file (19.9 kB)

UKB-AFR/trans/AFR+EUR/DYNLT1:P63172:OID30925:v1:Neurology_II/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:73b962de8c751f95eb399f2caf0c4922a0b2e18643ec286d8905a3d212e174b8
-size 456761

UKB-AFR/trans/AFR+EUR/ELOB:Q15370:OID30127:v1:Cardiometabolic_II/loc1.RData DELETED Viewed

Binary file (263 Bytes)

UKB-AFR/trans/AFR+EUR/ENG:P17813:OID20287:v1:Cardiometabolic/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:4d77ba615ca2c9d463bac83f699e47f2d90f7684e56108cf53044e542c38ce8b
-size 393726

UKB-AFR/trans/AFR+EUR/EPHA4:P54764:OID30622:v1:Inflammation_II/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:373d63935562bc59ab3c990fa1798b319667e4a8c11661e166659ff5bc8f4e86
-size 215149

UKB-AFR/trans/AFR+EUR/F11:P03951:OID30773:v1:Inflammation_II/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:c0c7284668a48d0d0e85c09386f0427bf8e81ca022f73bdc5e27aac8fc9c967b
-size 207431

UKB-AFR/trans/AFR+EUR/FAM171B:Q6P995:OID31338:v1:Oncology_II/loc1.RData DELETED Viewed

Binary file (20.8 kB)

UKB-AFR/trans/AFR+EUR/FAM171B:Q6P995:OID31338:v1:Oncology_II/loc2.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:725a3c8bf4f380cf51ddcc85e1fdac8118e604d3da596efb9c724df31b21710b
-size 297371

UKB-AFR/trans/AFR+EUR/FAM3D:Q96BQ1:OID31514:v1:Oncology_II/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:da8e52be55f4bbf3ac70e33c2dd9a387df09709221c437944e2655b691b1d3e3
-size 490763

UKB-AFR/trans/AFR+EUR/FAM3D:Q96BQ1:OID31514:v1:Oncology_II/loc2.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:91f18ffa37cbe0dba73f729ad44fd4358880ce76496edde81bc35c775d3c2b4d
-size 282835

UKB-AFR/trans/AFR+EUR/FASLG:P48023:OID20665:v1:Inflammation/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:bd2db1089fadca6853c2c6109254094119a7b0f7a111721c9ee244cd6770bc4d
-size 394535

UKB-AFR/trans/AFR+EUR/FLT1:P17948:OID21301:v1:Oncology/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:e25f15a7173de6caa2f216d39a7e27d64d3bf1716338d3b8f5ac6739cad59df9
-size 606223

UKB-AFR/trans/AFR+EUR/FUCA1:P04066:OID20261:v1:Cardiometabolic/loc1.RData DELETED Viewed

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:d453410ec28a83d94caeba459dc30a672d4e6c44c1487a47f8f34e969d187ce3
-size 699429