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14d6235 3f5d257 14d6235 3f5d257 14d6235 3f5d257 14d6235 3f5d257 14d6235 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 | #!/usr/bin/env python3
"""Compare every emitted citation pair with an independent SQL source projection."""
import argparse
import json
from pathlib import Path
import duckdb
def main():
parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument("dataset_dir", type=Path)
parser.add_argument("--source-dir", type=Path, required=True,
help="Directory containing the pinned data/all parquet shards")
parser.add_argument("--temp-dir", type=Path,
help="Directory where DuckDB spills to disk")
args = parser.parse_args()
config = {"threads": 4}
if args.temp_dir:
config["temp_directory"] = str(args.temp_dir)
c = duckdb.connect(config=config)
c.read_parquet(str(args.source_dir / "*.parquet")).create_view("source")
sql = (args.dataset_dir / "provenance/independent_projection.sql").read_text()
c.execute("CREATE TEMP TABLE expected AS " + sql)
c.read_json(str(args.dataset_dir / "data/*.jsonl.gz"),
format="newline_delimited").create_view("records")
unexpected_constants = c.execute("""SELECT count(*) FROM records
WHERE enrichedValue.relatedIdentifierType IS DISTINCT FROM 'DOI'
OR enrichedValue.relationType IS DISTINCT FROM 'IsCitedBy'""").fetchone()[0]
c.execute("""CREATE TEMP TABLE actual AS
SELECT doi, enrichedValue.relatedIdentifier AS related_identifier FROM records""")
missing = c.execute("SELECT count(*) FROM (SELECT * FROM expected EXCEPT SELECT * FROM actual)").fetchone()[0]
extra = c.execute("SELECT count(*) FROM (SELECT * FROM actual EXCEPT SELECT * FROM expected)").fetchone()[0]
expected_count = c.execute("SELECT count(*) FROM expected").fetchone()[0]
actual_count = c.execute("SELECT count(*) FROM actual").fetchone()[0]
passed = missing == extra == unexpected_constants == 0 and expected_count == actual_count
result = {"status": "passed" if passed else "failed",
"independent_expected_citations": expected_count,
"actual_citations": actual_count, "missing_citations": missing,
"extra_citations": extra,
"records_with_unexpected_constants": unexpected_constants}
print(json.dumps(result, indent=2))
assert passed
path = args.dataset_dir / "validation_report.json"
report = json.loads(path.read_text())
report["independent_source_comparison"] = result
path.write_text(json.dumps(report, indent=2) + "\n")
if __name__ == "__main__":
main()
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