Datasets:
Add article, composite vector figures, compact data and reproducible source
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- .gitattributes +10 -0
- wu_20261107_anatomy_trace_article/METHODS_RESULTS_zh.md +19 -0
- wu_20261107_anatomy_trace_article/README.md +35 -0
- wu_20261107_anatomy_trace_article/archive_members.json +812 -0
- wu_20261107_anatomy_trace_article/assets/mushroom_body.pdf +0 -0
- wu_20261107_anatomy_trace_article/assets/mushroom_body.svg +32 -0
- wu_20261107_anatomy_trace_article/assets/registered_brain.pdf +3 -0
- wu_20261107_anatomy_trace_article/assets/registered_brain.svg +0 -0
- wu_20261107_anatomy_trace_article/assets/synapse_circuit.pdf +0 -0
- wu_20261107_anatomy_trace_article/assets/synapse_circuit.svg +16 -0
- wu_20261107_anatomy_trace_article/briefing.pdf +3 -0
- wu_20261107_anatomy_trace_article/briefing.pptx +3 -0
- wu_20261107_anatomy_trace_article/dependencies.json +14 -0
- wu_20261107_anatomy_trace_article/figures/ExtendedData1.pdf +0 -0
- wu_20261107_anatomy_trace_article/figures/ExtendedData10.pdf +0 -0
- wu_20261107_anatomy_trace_article/figures/ExtendedData2.pdf +0 -0
- wu_20261107_anatomy_trace_article/figures/ExtendedData3.pdf +0 -0
- wu_20261107_anatomy_trace_article/figures/ExtendedData4.pdf +0 -0
- wu_20261107_anatomy_trace_article/figures/ExtendedData5.pdf +3 -0
- wu_20261107_anatomy_trace_article/figures/ExtendedData6.pdf +3 -0
- wu_20261107_anatomy_trace_article/figures/ExtendedData7.pdf +3 -0
- wu_20261107_anatomy_trace_article/figures/ExtendedData8.pdf +0 -0
- wu_20261107_anatomy_trace_article/figures/ExtendedData9.pdf +0 -0
- wu_20261107_anatomy_trace_article/figures/Figure1.pdf +3 -0
- wu_20261107_anatomy_trace_article/figures/Figure1.svg +0 -0
- wu_20261107_anatomy_trace_article/figures/Figure2.pdf +0 -0
- wu_20261107_anatomy_trace_article/figures/Figure2.svg +197 -0
- wu_20261107_anatomy_trace_article/figures/Figure3.pdf +0 -0
- wu_20261107_anatomy_trace_article/figures/Figure3.svg +428 -0
- wu_20261107_anatomy_trace_article/figures/Figure4.pdf +3 -0
- wu_20261107_anatomy_trace_article/figures/Figure4.svg +0 -0
- wu_20261107_anatomy_trace_article/figures/Figure5.pdf +0 -0
- wu_20261107_anatomy_trace_article/figures/Figure5.svg +0 -0
- wu_20261107_anatomy_trace_article/figures/Figure6.pdf +0 -0
- wu_20261107_anatomy_trace_article/figures/Figure6.svg +160 -0
- wu_20261107_anatomy_trace_article/manuscript.pdf +3 -0
- wu_20261107_anatomy_trace_article/overleaf_submission.zip +3 -0
- wu_20261107_anatomy_trace_article/paper_and_vectors.tar.gz +3 -0
- wu_20261107_anatomy_trace_article/release_manifest.json +626 -0
- wu_20261107_anatomy_trace_article/source_data/all_KC_somata.csv +0 -0
- wu_20261107_anatomy_trace_article/source_data/association_models.csv +69 -0
- wu_20261107_anatomy_trace_article/source_data/association_nulls.csv +3 -0
- wu_20261107_anatomy_trace_article/source_data/author_QC.csv +25 -0
- wu_20261107_anatomy_trace_article/source_data/cell_contrasts.csv +161 -0
- wu_20261107_anatomy_trace_article/source_data/cell_endpoints.csv +641 -0
- wu_20261107_anatomy_trace_article/source_data/cohort61.csv +62 -0
- wu_20261107_anatomy_trace_article/source_data/conductance_runs.csv +29 -0
- wu_20261107_anatomy_trace_article/source_data/contrast_summary.csv +16 -0
- wu_20261107_anatomy_trace_article/source_data/crossbrain_models.csv +17 -0
- wu_20261107_anatomy_trace_article/source_data/eligibility.csv +33 -0
.gitattributes
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@@ -94,3 +94,13 @@ wu_20261107_paper_figures/figures/ExtendedData6.pdf filter=lfs diff=lfs merge=lf
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wu_20261107_paper_figures/figures/ExtendedData7.pdf filter=lfs diff=lfs merge=lfs -text
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wu_20261107_paper_figures/figures/Figure1.pdf filter=lfs diff=lfs merge=lfs -text
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wu_20261107_paper_figures/manuscript.pdf filter=lfs diff=lfs merge=lfs -text
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wu_20261107_paper_figures/figures/ExtendedData7.pdf filter=lfs diff=lfs merge=lfs -text
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wu_20261107_paper_figures/figures/Figure1.pdf filter=lfs diff=lfs merge=lfs -text
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wu_20261107_paper_figures/manuscript.pdf filter=lfs diff=lfs merge=lfs -text
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wu_20261107_anatomy_trace_article/assets/registered_brain.pdf filter=lfs diff=lfs merge=lfs -text
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wu_20261107_anatomy_trace_article/briefing.pdf filter=lfs diff=lfs merge=lfs -text
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wu_20261107_anatomy_trace_article/briefing.pptx filter=lfs diff=lfs merge=lfs -text
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wu_20261107_anatomy_trace_article/figures/ExtendedData5.pdf filter=lfs diff=lfs merge=lfs -text
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wu_20261107_anatomy_trace_article/figures/Figure4.pdf filter=lfs diff=lfs merge=lfs -text
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wu_20261107_anatomy_trace_article/manuscript.pdf filter=lfs diff=lfs merge=lfs -text
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wu_20261107_anatomy_trace_article/source_data/meshes/BRAIN.glb filter=lfs diff=lfs merge=lfs -text
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wu_20261107_anatomy_trace_article/METHODS_RESULTS_zh.md
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# 当前方法与结论：从解剖定位到事件动态
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本版形成23页英文论文、六张复合主图/25个子图、十张扩展图和11页中文汇报。文章以“循环增益与时间组织如何塑造同一真实网络的输入整合”为主线，新增真实脑区矢量定位及事件级分析。
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研究底座保持不变：5,177个KC结构对象，原61细胞的32/15/14划分，以及32 KC + 2个真实MBON14的在线网络。1,926条循环接点、144条输出接点和外部解剖来源均保留。不同输入来源、外部电导和循环电导分别处理，未解释14继续保留原父类。
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本轮新增九个有来源和哈希记录的真实脑/蘑菇体表面投影，用原始坐标叠加全5,177个胞体、61细胞成员及32细胞骨架/突触。表面采用真实三角形投影的并集，不用凸包替代解剖形状；脑区颜色表示解剖对象，不表示活动。
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新增事件分析从20个封存条件重建4,377个波形事件，逐一核对640个细胞—条件计数与首响应。代表细胞固定为原顺序的第一个间接细胞gid0和第一个三来源合格细胞gid2，完整轨迹随数据发布；群体栅格保留全32细胞。
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现在的主要结果：
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1. 固定外部电导1 nS，循环电导由0.1提高到1 nS，使A响应由1细胞/18次波形扩展至32细胞/559次。
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2. 相同接点、权重和事件预算下，三种时间抖动的ABC减逐细胞最强单输入计数差为+27、+29、−29；成簇组织还使V/L产生响应。
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3. 新的192个A/ABC同步—抖动配对中，最大首响应相对时间变化为0.016235 ms，小于保存采样间隔0.025 ms；但166个配对的全时间窗波形数改变。时序效应在初始募集之后的累积输出中表现出来。
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4. 各时序内全32细胞共享一个二值支持集；连续轨迹仍有差异，首共享模式约占95.5%能量。
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5. 结构联合增益主要被条件空模型复现；公开生理全部作者QC判定匹配。固定/经验基线全7留出误差35.216/32.723 mV，QC通过4留出15.820/14.192 mV。
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这些结论来自定义明确的模型输入和公开数据比较；细胞、事件与时序不计作独立动物。本轮新增事件级再分析、图版和论文修订，不新增动物或模拟。下一步优先跨接点异步输入、时序配对细化与类型明确/刺激校准可恢复的公开确认数据。
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wu_20261107_anatomy_trace_article/README.md
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# Anatomy-to-dynamics article — 7 November 2026
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This revision links source-aligned brain anatomy to event-resolved model responses. It adds real anatomical vector projections, complete waveform-event tables and an onset-versus-accumulation analysis to the existing recurrent-gain/timing study. The paper is organized around results rather than project chronology.
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- [23-page article](exports/manuscript.pdf), [English text](manuscript/article.md), [LaTeX](manuscript/main.tex), [bibliography](manuscript/references.bib), [independently compiled Overleaf ZIP](https://huggingface.co/datasets/cyd0806/neuronmimic-data/resolve/main/wu_20261107_anatomy_trace_article/overleaf_submission.zip).
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- [11-slide Chinese briefing](https://huggingface.co/datasets/cyd0806/neuronmimic-data/resolve/main/wu_20261107_anatomy_trace_article/briefing.pptx), [vector PDF](exports/吴老师汇报_真实脑区与事件动态_20261107.pdf).
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- [Real brain/MB vector artwork](assets/registered_brain.svg), [six composite SVG/PDF main figures](figures/), [figure sources](figures/).
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- [Current methods/findings](当前方法与结论.md), [source data](source_data/), [original source attribution](metadata/mesh_source_attribution.json), [publication receipt](metadata/publication_receipt.json).
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## Paper and visuals
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Six composite figures (25 panels) progress through anatomical context and representation, recurrent recruitment, timing-dependent mixture contrasts, raw trajectories/event timing, continuous profiles and public physiological transfer. Ten Extended Data figures retain the complete prior controls. Brain art is generated from nine pinned upstream GLB display meshes using exact projected triangle unions, with all 5,177 soma positions and the original 32/15/14 membership. The local view overlays all 32 true skeletons and measured endpoints on the right mushroom-body surfaces. Original circuit/encoding schematics accompany the measured geometry.
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The new event-resolved layer reconstructs 4,377 accepted waveform events and verifies all 640 cell-condition readouts. Full-resolution traces for two cells fixed by anatomical eligibility and original ordering are released under every condition. Across 192 synchronous/jitter paired onsets, the largest observed relative change is 0.016235 ms, below the saved 0.025-ms sampling interval, while 166 full-window counts differ. All population rasters preserve the original 32-cell order. These are within-model readouts from sealed simulations.
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All six main figures and the entire briefing PDF contain vector graphics/text with no displayed raster images. PPTX includes seven SVG objects with compatibility fallbacks plus native editable text, flow shapes and a chart. Full source SVGs enable object-level editing in a vector editor. The two style-study Nature papers are documented in `references/DESIGN_SOURCES.md`; their images were not copied. The source-derived brain art retains the original mesh attribution and usage note.
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## Reproduce from compact inputs
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Use Python 3.11 and `requirements.txt`; paper/slides also require pdfLaTeX, BibTeX and LibreOffice.
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```bash
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.venv_fine_structure/bin/python projects/wu_20261107_anatomy_trace_article/code/build_anatomy.py
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.venv_fine_structure/bin/python projects/wu_20261107_anatomy_trace_article/code/analyze_onsets.py
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.venv_fine_structure/bin/python projects/wu_20261107_anatomy_trace_article/code/build_figures.py
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.venv_fine_structure/bin/python projects/wu_20261107_anatomy_trace_article/code/build_paper.py
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.venv_fine_structure/bin/python projects/wu_20261107_anatomy_trace_article/code/build_slides.py
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.venv_fine_structure/bin/python projects/wu_20261107_anatomy_trace_article/code/verify_release.py
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```
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The compact inputs include all nine original meshes, both fixed cells' complete initiation-site traces, event and endpoint tables and the prior figure-source tables. `prepare_new_inputs.py` is the original-workspace extraction/audit step; it is not required to replay the compact figures. `verify_release.py` regenerates anatomy, onset tables and all six main SVGs in an isolated directory. `build_paper.py` independently extracts and compiles the Overleaf package, comparing page text. The primary scientific simulations and parameters are unchanged; no new simulations or animals were added.
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## Versioned publication
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GitHub: `ydchen0806/bio_fly_cyber_lateralization`, branch `research/wu-structure-function-20261104`. HF dataset: `cyd0806/neuronmimic-data`, additive prefix `wu_20261107_anatomy_trace_article`. Source/payload/code revisions and historical-object preservation are recorded in the publication receipt. The preceding `wu_20261107_paper_figures` and all original waveform releases remain immutable. Mesh attribution is component-specific; no blanket relicensing is applied.
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wu_20261107_anatomy_trace_article/archive_members.json
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+
"path": "source_data/temporal_protocol.json",
|
| 616 |
+
"bytes": 8893,
|
| 617 |
+
"sha256": "e33cc2720438f4a98c4c3a300551e8e4974ca0c5e02eefad8b2db5a8c9610109",
|
| 618 |
+
"git_blob_sha1": "d59bf851353d5723bad9c924018c64479f32a242"
|
| 619 |
+
},
|
| 620 |
+
{
|
| 621 |
+
"path": "source_data/waveform_events.csv",
|
| 622 |
+
"bytes": 268192,
|
| 623 |
+
"sha256": "958864f65befb903e4cafa8c8e542b97c8649c68b9604d46c07b02bdf1aadf08",
|
| 624 |
+
"git_blob_sha1": "8612d3b7b9025ae744817abf566bb3ca2a765975"
|
| 625 |
+
}
|
| 626 |
+
]
|
wu_20261107_anatomy_trace_article/source_data/all_KC_somata.csv
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
wu_20261107_anatomy_trace_article/source_data/association_models.csv
ADDED
|
@@ -0,0 +1,69 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
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|
|
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|
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|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
arm,width_um,alpha,null_seed,macro_error,macro_JS_bits,n_parents,all_cell_error,n_cells
|
| 2 |
+
GP,20,10.0,,0.054309650940673714,0.0664587450557958,18,0.060956253955747844,5177
|
| 3 |
+
GP,80,10.0,,0.053586480146038416,0.06561365573083967,18,0.060243563436054845,5177
|
| 4 |
+
GPJ,20,10.0,,0.05289601348859491,0.06482855138890185,18,0.059927855383786525,5177
|
| 5 |
+
GPJ,80,10.0,,0.05170722340012479,0.06341787716692296,18,0.05912572951910219,5177
|
| 6 |
+
base,40,1.0,,0.05700461400485654,0.06973794204483805,18,0.0628548521234918,5177
|
| 7 |
+
base,40,10.0,,0.05807008525094786,0.07086301708145204,18,0.06371307263938775,5177
|
| 8 |
+
base,40,100.0,,0.0736872107432748,0.08706308079481268,18,0.07244394526100414,5177
|
| 9 |
+
base_G32_P32,40,1.0,,0.0531922636172503,0.06521491217798771,18,0.06004623933093793,5177
|
| 10 |
+
base_G32_P32,40,10.0,,0.05383898384568294,0.06589727026225513,18,0.06053344496395871,5177
|
| 11 |
+
base_G32_P32,40,100.0,,0.0587986824143309,0.0712281523991703,18,0.06386153926180829,5177
|
| 12 |
+
base_G32_P32_J64,40,1.0,,0.05186837098140692,0.06368328250431257,18,0.05928971412560101,5177
|
| 13 |
+
base_G32_P32_J64,40,10.0,,0.05218952964470627,0.0639747270371871,18,0.05950261016902271,5177
|
| 14 |
+
base_G32_P32_J64,40,100.0,,0.056780839090325524,0.068882621446779,18,0.06240395180937787,5177
|
| 15 |
+
base_G32_P32_NULL64,40,1.0,2026110507.0,0.051878878096944685,0.0636910104019648,18,0.0593013300118183,5177
|
| 16 |
+
base_G32_P32_NULL64,40,10.0,2026110507.0,0.052203194212613095,0.0639928309999059,18,0.05951717620162,5177
|
| 17 |
+
base_G32_P32_NULL64,40,10.0,2026110508.0,0.05221434611140812,0.06400745697928929,18,0.05952752194452331,5177
|
| 18 |
+
base_G32_P32_NULL64,40,10.0,2026110509.0,0.052206899615442885,0.06399823998855023,18,0.05952248711511569,5177
|
| 19 |
+
base_G32_P32_NULL64,40,10.0,2026110510.0,0.05220775343865494,0.06399979011270988,18,0.05952652189356099,5177
|
| 20 |
+
base_G32_P32_NULL64,40,10.0,2026110511.0,0.052191277923934416,0.06397934885802217,18,0.05950513154355723,5177
|
| 21 |
+
base_G32_P32_NULL64,40,10.0,2026110512.0,0.05221446922895117,0.06400791753353981,18,0.0595177042012323,5177
|
| 22 |
+
base_G32_P32_NULL64,40,10.0,2026110513.0,0.052207619177219514,0.06399827029926063,18,0.059515378087048196,5177
|
| 23 |
+
base_G32_P32_NULL64,40,10.0,2026110514.0,0.052214037134786215,0.06400299154128503,18,0.05952084214861212,5177
|
| 24 |
+
base_G32_P32_NULL64,40,10.0,2026110515.0,0.052189297879214516,0.06397659406203828,18,0.059506355937204596,5177
|
| 25 |
+
base_G32_P32_NULL64,40,10.0,2026110516.0,0.05219032675804111,0.06398018361633066,18,0.05952117262846958,5177
|
| 26 |
+
base_G32_P32_NULL64,40,10.0,2026110517.0,0.05220932841427439,0.06399956002566515,18,0.0595034792856761,5177
|
| 27 |
+
base_G32_P32_NULL64,40,10.0,2026110518.0,0.05220158389997683,0.06399308694665304,18,0.05951085123066603,5177
|
| 28 |
+
base_G32_P32_NULL64,40,10.0,2026110519.0,0.05221842583619123,0.0640124816674186,18,0.05952375455324414,5177
|
| 29 |
+
base_G32_P32_NULL64,40,10.0,2026110520.0,0.052200953888290734,0.0639935135653319,18,0.059514420485159085,5177
|
| 30 |
+
base_G32_P32_NULL64,40,10.0,2026110521.0,0.052221891987422844,0.0640143798436305,18,0.059518047607023755,5177
|
| 31 |
+
base_G32_P32_NULL64,40,10.0,2026110522.0,0.05221177200499484,0.06400647882770956,18,0.059519005182854,5177
|
| 32 |
+
base_G32_P32_NULL64,40,10.0,2026110523.0,0.052211168762452694,0.06400341773273736,18,0.059520964694394204,5177
|
| 33 |
+
base_G32_P32_NULL64,40,10.0,2026110524.0,0.05220915923676525,0.06399990645680356,18,0.05951066294337978,5177
|
| 34 |
+
base_G32_P32_NULL64,40,10.0,2026110525.0,0.05219713072156013,0.06398545654801614,18,0.059508935967447565,5177
|
| 35 |
+
base_G32_P32_NULL64,40,100.0,2026110507.0,0.05678587004102209,0.0688890967306943,18,0.062417532220906076,5177
|
| 36 |
+
base_G64,40,1.0,,0.05461368228490735,0.06691160803085072,18,0.060943031587731254,5177
|
| 37 |
+
base_G64,40,10.0,,0.05541490914297965,0.06771524196886121,18,0.061632610931988484,5177
|
| 38 |
+
base_G64,40,100.0,,0.07055223900601454,0.08351757134028091,18,0.0702964243005114,5177
|
| 39 |
+
base_J64,40,1.0,,0.05296442462530174,0.0649970311320897,18,0.05997203097972264,5177
|
| 40 |
+
base_J64,40,10.0,,0.053743911345018824,0.06577835175337397,18,0.06056064711531312,5177
|
| 41 |
+
base_J64,40,100.0,,0.06637124488007834,0.0789834069435234,18,0.06758412702595928,5177
|
| 42 |
+
base_P64,40,1.0,,0.054807618914128824,0.06711269238313448,18,0.061485447618822894,5177
|
| 43 |
+
base_P64,40,10.0,,0.05557603222938412,0.06796444766601645,18,0.061964873396588266,5177
|
| 44 |
+
base_P64,40,100.0,,0.06088513737289151,0.0736308573372653,18,0.06530909504101973,5177
|
| 45 |
+
branch_NULL,20,10.0,2026110507.0,0.052895639817215505,0.06482947093614444,18,0.05993134489768997,5177
|
| 46 |
+
branch_NULL,40,1.0,2026110507.0,0.05186742397005114,0.06367857079627151,18,0.05929092720563888,5177
|
| 47 |
+
branch_NULL,40,10.0,2026110507.0,0.05218584556482646,0.06396933495071533,18,0.05950192388366236,5177
|
| 48 |
+
branch_NULL,40,10.0,2026110508.0,0.05220379625897114,0.06399265971113982,18,0.059511335472267064,5177
|
| 49 |
+
branch_NULL,40,10.0,2026110509.0,0.05220566762296443,0.063994680078588,18,0.059512873946275996,5177
|
| 50 |
+
branch_NULL,40,10.0,2026110510.0,0.05220017134819445,0.06398778102078095,18,0.05950998806660632,5177
|
| 51 |
+
branch_NULL,40,10.0,2026110511.0,0.05219307507255427,0.06397907756966298,18,0.059503313029906586,5177
|
| 52 |
+
branch_NULL,40,10.0,2026110512.0,0.05219349097984342,0.06398019531613774,18,0.05950717541728501,5177
|
| 53 |
+
branch_NULL,40,10.0,2026110513.0,0.0521908693362965,0.06397616346184588,18,0.059504752538216445,5177
|
| 54 |
+
branch_NULL,40,10.0,2026110514.0,0.052194487579683486,0.06398093480088951,18,0.05950682239619434,5177
|
| 55 |
+
branch_NULL,40,10.0,2026110515.0,0.052193106507840474,0.06398002604175171,18,0.059507531752328945,5177
|
| 56 |
+
branch_NULL,40,10.0,2026110516.0,0.05219241116499976,0.06397811842527379,18,0.05950505004126084,5177
|
| 57 |
+
branch_NULL,40,10.0,2026110517.0,0.05219458730888657,0.0639813573367053,18,0.059506875635959376,5177
|
| 58 |
+
branch_NULL,40,10.0,2026110518.0,0.05219605703545444,0.06398351955175531,18,0.059509120173246347,5177
|
| 59 |
+
branch_NULL,40,10.0,2026110519.0,0.05218980604386817,0.0639751969051318,18,0.05950262091943457,5177
|
| 60 |
+
branch_NULL,40,10.0,2026110520.0,0.052187653157476234,0.06397270872176301,18,0.059501242173881176,5177
|
| 61 |
+
branch_NULL,40,10.0,2026110521.0,0.05219406405615276,0.06398172006942267,18,0.059505898009709395,5177
|
| 62 |
+
branch_NULL,40,10.0,2026110522.0,0.05219595731637743,0.06398257693552412,18,0.05950849454113052,5177
|
| 63 |
+
branch_NULL,40,10.0,2026110523.0,0.0521918929861193,0.06397791224793263,18,0.05950562381563122,5177
|
| 64 |
+
branch_NULL,40,10.0,2026110524.0,0.05219691213884403,0.06398524510276504,18,0.05951008885664777,5177
|
| 65 |
+
branch_NULL,40,10.0,2026110525.0,0.05219398493454105,0.0639815662222814,18,0.059503118136518506,5177
|
| 66 |
+
branch_NULL,40,100.0,2026110507.0,0.0567749161771873,0.06887509360777422,18,0.06240169814412215,5177
|
| 67 |
+
branch_NULL,80,10.0,2026110507.0,0.05171139729817477,0.06342191196551662,18,0.05913114293333881,5177
|
| 68 |
+
region_NULL,20,10.0,2026110507.0,0.05292579993554545,0.0648627217412529,18,0.05995375723761605,5177
|
| 69 |
+
region_NULL,80,10.0,2026110507.0,0.05172201127085675,0.06343406195521582,18,0.05915126260102703,5177
|
wu_20261107_anatomy_trace_article/source_data/association_nulls.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
null_type,n_nulls,true_macro_error,null_min,null_mean,null_max,true_advantage_over_mean_null,GP_to_true_gain,gain_fraction_reproduced_by_mean_null,null_errors_le_true,MC_lower_error_rank_p,interpretation
|
| 2 |
+
region,19,0.05218952964470627,0.052189297879214516,0.052206349275378684,0.052221891987422844,1.681963067241138e-05,0.0016494542009766675,0.9898029113736821,1,0.1,finite conditional permutation reference; no animal-level inference
|
| 3 |
+
branch,19,0.05218952964470627,0.05218584556482646,0.05219441244283655,0.05220566762296443,4.882798130274868e-06,0.0016494542009766675,0.997039749192561,2,0.15,finite conditional permutation reference; no animal-level inference
|
wu_20261107_anatomy_trace_article/source_data/author_QC.csv
ADDED
|
@@ -0,0 +1,25 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
condition,fly,inferred_source_excel_row,mapping_basis,author_R_GOhm,reconstructed_R_GOhm,relative_R_difference,tau_ms,negative_step_fit_RMSE_mV,author_excluded,reconstructed_excluded,monitor_delta_pA,nominal_DAC_pA,onset_ms
|
| 2 |
+
WT,1,74,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,0.414825561520021,0.41482535941488274,4.872051218018925e-07,7.900715515642889,1.259379958287453,True,True,-20.1416015625,-40,231.26
|
| 3 |
+
WT,2,75,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,3.09802985984673,3.098028894748135,3.115201075987173e-07,46.207768791720156,13.60266054191366,False,False,-20.1416015625,-40,231.26
|
| 4 |
+
WT,3,76,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,0.268968531319347,0.2689685252618688,2.2521140841114118e-08,3.213517802541524,0.3100224784305743,True,True,-20.1416015625,-40,231.26
|
| 5 |
+
WT,4,77,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,1.0259887340761,1.0259911969025521,2.4004420031698004e-06,6.289053538772674,34.640841427753294,False,False,-19.83642578125,-40,231.26
|
| 6 |
+
WT,5,78,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,1.63283385466921,1.632833808877508,2.8044311983776993e-08,28.32576134384206,4.981681104337597,False,False,-20.1416015625,-40,231.26
|
| 7 |
+
WT,6,79,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,0.80336235952451,0.8033623392397684,2.5249803248250657e-08,16.033757517569413,4.177336399306763,False,False,-20.1416015625,-40,231.26
|
| 8 |
+
WT,7,80,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,0.436521744129391,0.43652173450416365,2.204982330056282e-08,5.722568494916409,0.6458197578326936,True,True,-20.1416015625,-40,231.26
|
| 9 |
+
WT,8,81,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,1.28981251120351,1.2898124876391266,1.8269619150856897e-08,18.434534193154697,1.7331733559718976,False,False,-20.1416015625,-40,231.26
|
| 10 |
+
WT,9,82,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,1.09934918692818,1.0993485032939996,6.218535371083078e-07,14.65783479839107,4.964906256413454,False,False,-20.1416015625,-40,231.26
|
| 11 |
+
WT,10,83,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,1.35560245083886,1.3556024197571355,2.292834788697462e-08,23.267138587080517,1.0877538583497626,False,False,-20.1416015625,-40,231.26
|
| 12 |
+
NaChBac,1,29,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,0.295389783740758,0.29538977073224937,4.403845144107521e-08,3.623043616611295,0.2073128786959268,True,True,-20.1416015625,-40,231.26
|
| 13 |
+
NaChBac,2,30,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,0.646970062133017,0.646969927249873,2.0848436721454533e-07,7.767632893435204,5.983315571916739,True,True,-19.83642578125,-40,231.26
|
| 14 |
+
NaChBac,3,31,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,2.16287206000063,2.162871999031595,2.8188923306693425e-08,28.8313254823468,2.1991206870772273,False,False,-20.1416015625,-40,231.26
|
| 15 |
+
NaChBac,4,32,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,0.592717337718566,0.5927147249384301,4.408138533529282e-06,2.09410079649728,15.195931286839668,True,True,-20.1416015625,-40,231.26
|
| 16 |
+
NaChBac,5,33,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,0.607413540989338,0.6074135816078371,6.687124409765488e-08,4.906498798713186,1.4550680887070575,True,True,-20.1416015625,-40,231.26
|
| 17 |
+
NaChBac,6,34,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,0.226205266525797,0.22620523164887207,1.5418263887845285e-07,5.742920581759393,0.33232897894425323,True,True,-20.1416015625,-40,231.26
|
| 18 |
+
NaChBac,7,35,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,0.593269960894926,0.5932699489915764,2.0063968264594223e-08,6.5039379380659295,0.8114237884876729,True,True,-20.1416015625,-40,231.26
|
| 19 |
+
NaChBac,8,36,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,1.57645888268982,1.5764607564447348,1.1885847042147901e-06,17.540646166755028,7.817592029631036,False,False,-20.1416015625,-40,231.26
|
| 20 |
+
NaChBac,9,37,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,1.92168431186752,1.9216841799585669,6.864236345993646e-08,34.98461122278199,2.7471828233890183,False,False,-20.1416015625,-40,231.26
|
| 21 |
+
NaChBac,10,38,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,2.3743599817375,2.3743599661979724,6.5447226527126645e-09,33.32560122911819,2.109211900740331,False,False,-20.1416015625,-40,231.26
|
| 22 |
+
NaChBac,11,39,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,2.06771207512855,2.067713580967968,7.282635896554979e-07,44.83478565940745,5.533784334615831,False,False,-20.1416015625,-40,231.26
|
| 23 |
+
NaChBac,12,40,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,0.270572480095479,0.270572454557122,9.438638037817526e-08,2.759709119477294,0.5649965496353587,True,True,-20.1416015625,-40,231.26
|
| 24 |
+
NaChBac,13,41,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,0.991253363074116,0.9912533137279451,4.97815924038747e-08,18.107870601590754,1.014371716849287,False,False,-20.1416015625,-40,231.26
|
| 25 |
+
NaChBac,14,42,Condition plus within-condition source row order; checked against full fitted R fingerprint. No explicit file ID in workbook.,1.50964716524111,1.5096471285095803,2.433120183109594e-08,25.724114935615177,1.9155390319322756,False,False,-20.1416015625,-40,231.26
|
wu_20261107_anatomy_trace_article/source_data/cell_contrasts.csv
ADDED
|
@@ -0,0 +1,161 @@
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| 1 |
+
schedule,gid,root_id,eligible,voltage_ABC_minus_mean_mV,voltage_ABC_minus_best_mV,count_ABC_minus_mean,count_ABC_minus_best,responsive_masks
|
| 2 |
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synchronous,0,720575940606579465,False,10.722717279448439,-0.1453703698292088,12.0,0,"1,7"
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| 8 |
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| 9 |
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| 10 |
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synchronous,8,720575940621606755,False,10.717263393905768,-0.033392068064010516,12.0,0,"1,7"
|
| 11 |
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synchronous,9,720575940621770010,True,11.829570466312497,-0.07241692492983987,12.0,0,"1,7"
|
| 12 |
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synchronous,10,720575940622003316,False,11.587834947002477,0.12033034036145551,12.0,0,"1,7"
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| 13 |
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| 14 |
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| 15 |
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| 16 |
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| 34 |
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| 35 |
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| 36 |
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wu_20261107_anatomy_trace_article/source_data/cell_endpoints.csv
ADDED
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@@ -0,0 +1,641 @@
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|
| 1 |
+
schedule,mask,gid,root_id,eligible,mean_soma_mV,waveform_count,latency_from100_ms,latency_from_first_input_ms
|
| 2 |
+
synchronous,1,0,720575940606579465,False,-54.93152816859372,18,21.474999999999994,21.474999999999994
|
| 3 |
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synchronous,1,1,720575940606698697,False,-50.37471180022891,18,19.825000000000003,19.825000000000003
|
| 4 |
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synchronous,1,2,720575940615832577,True,-48.148384153522095,18,21.049999999999997,21.049999999999997
|
| 5 |
+
synchronous,1,3,720575940618341952,True,-46.51976807017947,1,18.575000000000003,18.575000000000003
|
| 6 |
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synchronous,1,4,720575940618662939,False,-53.8545855281846,18,18.900000000000006,18.900000000000006
|
| 7 |
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synchronous,1,5,720575940619077217,False,-54.436102268195725,18,20.75,20.75
|
| 8 |
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synchronous,1,6,720575940619897734,False,-54.49587561306793,18,21.575000000000003,21.575000000000003
|
| 9 |
+
synchronous,1,7,720575940620333958,False,-51.112676903949826,18,16.799999999999997,16.799999999999997
|
| 10 |
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synchronous,1,8,720575940621606755,False,-55.10021444446611,18,21.599999999999994,21.599999999999994
|
| 11 |
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synchronous,1,9,720575940621770010,True,-51.271193919087715,18,22.025000000000006,22.025000000000006
|
| 12 |
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synchronous,1,10,720575940622003316,False,-54.02954987018608,18,21.125,21.125
|
| 13 |
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synchronous,1,11,720575940622412838,False,-49.60297244603795,18,16.599999999999994,16.599999999999994
|
| 14 |
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synchronous,1,12,720575940622836455,True,-53.00494433322054,18,22.099999999999994,22.099999999999994
|
| 15 |
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synchronous,1,13,720575940623973961,False,-53.715910692200254,18,21.674999999999997,21.674999999999997
|
| 16 |
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synchronous,1,14,720575940624107755,False,-51.38072396697088,18,18.5,18.5
|
| 17 |
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synchronous,1,15,720575940625328915,False,-52.08083518254724,18,19.400000000000006,19.400000000000006
|
| 18 |
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synchronous,1,16,720575940625500304,False,-53.94607631080872,18,20.950000000000003,20.950000000000003
|
| 19 |
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synchronous,1,17,720575940626305028,True,-50.91448104352259,18,18.325000000000003,18.325000000000003
|
| 20 |
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synchronous,1,18,720575940627585028,False,-54.23754710800217,18,22.25,22.25
|
| 21 |
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synchronous,1,19,720575940627626244,False,-55.03505145211732,18,22.099999999999994,22.099999999999994
|
| 22 |
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synchronous,1,20,720575940629319106,True,-52.94225971711321,18,22.924999999999997,22.924999999999997
|
| 23 |
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synchronous,1,21,720575940629507706,True,-43.874400051990136,18,12.424999999999997,12.424999999999997
|
| 24 |
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synchronous,1,22,720575940630331244,True,-51.69009878781768,18,20.375,20.375
|
| 25 |
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synchronous,1,23,720575940630775891,False,-53.17348242835626,18,16.924999999999997,16.924999999999997
|
| 26 |
+
synchronous,1,24,720575940630923693,False,-55.30045749636411,18,21.974999999999994,21.974999999999994
|
| 27 |
+
synchronous,1,25,720575940632437331,True,-50.79032264745021,18,17.700000000000003,17.700000000000003
|
| 28 |
+
synchronous,1,26,720575940633103059,False,-50.43956984487885,18,13.200000000000003,13.200000000000003
|
| 29 |
+
synchronous,1,27,720575940634514533,False,-53.12249661976704,18,22.674999999999997,22.674999999999997
|
| 30 |
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synchronous,1,28,720575940634664674,False,-52.731193191077175,18,22.849999999999994,22.849999999999994
|
| 31 |
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synchronous,1,29,720575940643769544,False,-49.24128651578775,18,14.174999999999997,14.174999999999997
|
| 32 |
+
synchronous,1,30,720575940644413732,False,-54.47061753619977,18,19.924999999999997,19.924999999999997
|
| 33 |
+
synchronous,1,31,720575940649022841,True,-44.48655232323548,18,6.900000000000006,6.900000000000006
|
| 34 |
+
synchronous,2,0,720575940606579465,False,-71.23365964251019,0,,
|
| 35 |
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synchronous,2,1,720575940606698697,False,-71.23018687053029,0,,
|
| 36 |
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synchronous,2,2,720575940615832577,True,-63.80442544055886,0,,
|
| 37 |
+
synchronous,2,3,720575940618341952,True,-62.823700169983056,0,,
|
| 38 |
+
synchronous,2,4,720575940618662939,False,-71.23278214508143,0,,
|
| 39 |
+
synchronous,2,5,720575940619077217,False,-71.23338858631952,0,,
|
| 40 |
+
synchronous,2,6,720575940619897734,False,-71.22952198024367,0,,
|
| 41 |
+
synchronous,2,7,720575940620333958,False,-71.22947888234778,0,,
|
| 42 |
+
synchronous,2,8,720575940621606755,False,-71.22619763742078,0,,
|
| 43 |
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synchronous,2,9,720575940621770010,True,-69.1316279984322,0,,
|
| 44 |
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synchronous,2,10,720575940622003316,False,-71.23080678014762,0,,
|
| 45 |
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synchronous,2,11,720575940622412838,False,-71.2311845484065,0,,
|
| 46 |
+
synchronous,2,12,720575940622836455,True,-69.32351791788678,0,,
|
| 47 |
+
synchronous,2,13,720575940623973961,False,-71.2271857445421,0,,
|
| 48 |
+
synchronous,2,14,720575940624107755,False,-71.23122463133878,0,,
|
| 49 |
+
synchronous,2,15,720575940625328915,False,-71.23206260986677,0,,
|
| 50 |
+
synchronous,2,16,720575940625500304,False,-71.23221985626122,0,,
|
| 51 |
+
synchronous,2,17,720575940626305028,True,-69.42964120378821,0,,
|
| 52 |
+
synchronous,2,18,720575940627585028,False,-71.22871873679301,0,,
|
| 53 |
+
synchronous,2,19,720575940627626244,False,-71.2337413269467,0,,
|
| 54 |
+
synchronous,2,20,720575940629319106,True,-67.4014763745282,0,,
|
| 55 |
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synchronous,2,21,720575940629507706,True,-61.59727290066256,0,,
|
| 56 |
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synchronous,2,22,720575940630331244,True,-66.39162646225203,0,,
|
| 57 |
+
synchronous,2,23,720575940630775891,False,-71.2319131747995,0,,
|
| 58 |
+
synchronous,2,24,720575940630923693,False,-71.23335737956606,0,,
|
| 59 |
+
synchronous,2,25,720575940632437331,True,-67.61019204618884,0,,
|
| 60 |
+
synchronous,2,26,720575940633103059,False,-71.23011178072646,0,,
|
| 61 |
+
synchronous,2,27,720575940634514533,False,-71.23512565448897,0,,
|
| 62 |
+
synchronous,2,28,720575940634664674,False,-71.23081040057166,0,,
|
| 63 |
+
synchronous,2,29,720575940643769544,False,-71.23128752588886,0,,
|
| 64 |
+
synchronous,2,30,720575940644413732,False,-71.23226344685295,0,,
|
| 65 |
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synchronous,2,31,720575940649022841,True,-58.33184667049392,0,,
|
| 66 |
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synchronous,4,0,720575940606579465,False,-71.23365964251019,0,,
|
| 67 |
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synchronous,4,1,720575940606698697,False,-71.23018687053029,0,,
|
| 68 |
+
synchronous,4,2,720575940615832577,True,-62.61833215933384,0,,
|
| 69 |
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synchronous,4,3,720575940618341952,True,-63.02713091191681,0,,
|
| 70 |
+
synchronous,4,4,720575940618662939,False,-71.23278214508143,0,,
|
| 71 |
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synchronous,4,5,720575940619077217,False,-71.23338858631952,0,,
|
| 72 |
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synchronous,4,6,720575940619897734,False,-71.22952198024367,0,,
|
| 73 |
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synchronous,4,7,720575940620333958,False,-71.22947888234778,0,,
|
| 74 |
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synchronous,4,8,720575940621606755,False,-71.22619763742078,0,,
|
| 75 |
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synchronous,4,9,720575940621770010,True,-69.11672201347025,0,,
|
| 76 |
+
synchronous,4,10,720575940622003316,False,-71.23080678014762,0,,
|
| 77 |
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synchronous,4,11,720575940622412838,False,-71.2311845484065,0,,
|
| 78 |
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synchronous,4,12,720575940622836455,True,-69.30961672206016,0,,
|
| 79 |
+
synchronous,4,13,720575940623973961,False,-71.2271857445421,0,,
|
| 80 |
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synchronous,4,14,720575940624107755,False,-71.23122463133878,0,,
|
| 81 |
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synchronous,4,15,720575940625328915,False,-71.23206260986677,0,,
|
| 82 |
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synchronous,4,16,720575940625500304,False,-71.23221985626122,0,,
|
| 83 |
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synchronous,4,17,720575940626305028,True,-69.27330472365836,0,,
|
| 84 |
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synchronous,4,18,720575940627585028,False,-71.22871873679301,0,,
|
| 85 |
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synchronous,4,19,720575940627626244,False,-71.2337413269467,0,,
|
| 86 |
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synchronous,4,20,720575940629319106,True,-67.45561089841132,0,,
|
| 87 |
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synchronous,4,21,720575940629507706,True,-61.61768725937909,0,,
|
| 88 |
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synchronous,4,22,720575940630331244,True,-66.43055085500838,0,,
|
| 89 |
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synchronous,4,23,720575940630775891,False,-71.2319131747995,0,,
|
| 90 |
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synchronous,4,24,720575940630923693,False,-71.23335737956606,0,,
|
| 91 |
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synchronous,4,25,720575940632437331,True,-67.49013052398765,0,,
|
| 92 |
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synchronous,4,26,720575940633103059,False,-71.23011178072646,0,,
|
| 93 |
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|
| 94 |
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|
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synchronous,4,29,720575940643769544,False,-71.23128752588886,0,,
|
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|
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|
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|
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|
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|
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|
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|
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synchronous,7,5,720575940619077217,False,-54.48402655377888,18,21.174999999999997,21.174999999999997
|
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synchronous,7,6,720575940619897734,False,-54.49081218280681,18,22.075000000000003,22.075000000000003
|
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|
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synchronous,7,8,720575940621606755,False,-55.13360651253012,18,22.125,22.125
|
| 107 |
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synchronous,7,9,720575940621770010,True,-51.343610844017554,18,22.5,22.5
|
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synchronous,7,10,720575940622003316,False,-53.909219529824625,18,21.650000000000006,21.650000000000006
|
| 109 |
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synchronous,7,11,720575940622412838,False,-49.720335094067,18,17.150000000000006,17.150000000000006
|
| 110 |
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synchronous,7,12,720575940622836455,True,-53.078852376903384,18,22.599999999999994,22.599999999999994
|
| 111 |
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synchronous,7,13,720575940623973961,False,-53.8283857244642,18,22.150000000000006,22.150000000000006
|
| 112 |
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synchronous,7,14,720575940624107755,False,-51.46239194702741,18,19.0,19.0
|
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synchronous,7,15,720575940625328915,False,-52.1650274209497,18,19.875,19.875
|
| 114 |
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synchronous,7,16,720575940625500304,False,-53.974327027912906,18,21.450000000000003,21.450000000000003
|
| 115 |
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synchronous,7,17,720575940626305028,True,-51.11608369313545,18,18.825000000000003,18.825000000000003
|
| 116 |
+
synchronous,7,18,720575940627585028,False,-54.24669572656633,18,22.75,22.75
|
| 117 |
+
synchronous,7,19,720575940627626244,False,-54.818317446971,18,22.575000000000003,22.575000000000003
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bursty_three_epochs,2,18,720575940627585028,False,-68.28562837514822,3,20.200000000000003,20.200000000000003
|
| 565 |
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bursty_three_epochs,2,19,720575940627626244,False,-68.26342064297741,3,20.125,20.125
|
| 566 |
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bursty_three_epochs,2,20,720575940629319106,True,-66.31269747301694,3,18.400000000000006,18.400000000000006
|
| 567 |
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bursty_three_epochs,2,21,720575940629507706,True,-64.34085220982115,3,9.025000000000006,9.025000000000006
|
| 568 |
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bursty_three_epochs,2,22,720575940630331244,True,-65.80411358613225,3,17.549999999999997,17.549999999999997
|
| 569 |
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bursty_three_epochs,2,23,720575940630775891,False,-67.93733925131518,3,16.700000000000003,16.700000000000003
|
| 570 |
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bursty_three_epochs,2,24,720575940630923693,False,-68.48962588370904,3,20.125,20.125
|
| 571 |
+
bursty_three_epochs,2,25,720575940632437331,True,-66.25480260375045,3,15.724999999999994,15.724999999999994
|
| 572 |
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bursty_three_epochs,2,26,720575940633103059,False,-67.73818996337432,3,14.549999999999997,14.549999999999997
|
| 573 |
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bursty_three_epochs,2,27,720575940634514533,False,-68.14983153777338,3,19.724999999999994,19.724999999999994
|
| 574 |
+
bursty_three_epochs,2,28,720575940634664674,False,-67.89688272722213,3,20.349999999999994,20.349999999999994
|
| 575 |
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bursty_three_epochs,2,29,720575940643769544,False,-67.02891178882777,3,12.0,12.0
|
| 576 |
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bursty_three_epochs,2,30,720575940644413732,False,-68.2826818342347,3,18.674999999999997,18.674999999999997
|
| 577 |
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bursty_three_epochs,2,31,720575940649022841,True,-63.36139262826493,3,11.625,11.625
|
| 578 |
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bursty_three_epochs,4,0,720575940606579465,False,-68.56191623032184,3,19.799999999999997,19.799999999999997
|
| 579 |
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bursty_three_epochs,4,1,720575940606698697,False,-67.42379490296044,3,17.025000000000006,17.025000000000006
|
| 580 |
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bursty_three_epochs,4,2,720575940615832577,True,-64.57439751410897,3,14.924999999999997,14.924999999999997
|
| 581 |
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bursty_three_epochs,4,3,720575940618341952,True,-64.83532913527137,3,13.974999999999994,13.974999999999994
|
| 582 |
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bursty_three_epochs,4,4,720575940618662939,False,-68.11298997212104,3,17.450000000000003,17.450000000000003
|
| 583 |
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bursty_three_epochs,4,5,720575940619077217,False,-68.17667796008938,3,18.650000000000006,18.650000000000006
|
| 584 |
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bursty_three_epochs,4,6,720575940619897734,False,-68.03510140346894,3,19.125,19.125
|
| 585 |
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bursty_three_epochs,4,7,720575940620333958,False,-67.57829121929029,3,16.224999999999994,16.224999999999994
|
| 586 |
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bursty_three_epochs,4,8,720575940621606755,False,-68.55824306272127,3,20.25,20.25
|
| 587 |
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bursty_three_epochs,4,9,720575940621770010,True,-66.86498294967794,3,18.849999999999994,18.849999999999994
|
| 588 |
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bursty_three_epochs,4,10,720575940622003316,False,-68.26386745913408,3,19.375,19.375
|
| 589 |
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bursty_three_epochs,4,11,720575940622412838,False,-67.43796152832469,3,15.625,15.625
|
| 590 |
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bursty_three_epochs,4,12,720575940622836455,True,-67.13082432442775,3,19.549999999999997,19.549999999999997
|
| 591 |
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bursty_three_epochs,4,13,720575940623973961,False,-68.15414885481204,3,19.924999999999997,19.924999999999997
|
| 592 |
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bursty_three_epochs,4,14,720575940624107755,False,-67.91101631317655,3,18.0,18.0
|
| 593 |
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bursty_three_epochs,4,15,720575940625328915,False,-67.97438699530215,3,18.325000000000003,18.325000000000003
|
| 594 |
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bursty_three_epochs,4,16,720575940625500304,False,-68.06064031598206,3,18.200000000000003,18.200000000000003
|
| 595 |
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bursty_three_epochs,4,17,720575940626305028,True,-66.85891989664644,3,16.549999999999997,16.549999999999997
|
| 596 |
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bursty_three_epochs,4,18,720575940627585028,False,-68.27864251296481,3,19.849999999999994,19.849999999999994
|
| 597 |
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bursty_three_epochs,4,19,720575940627626244,False,-68.2439293681568,3,19.75,19.75
|
| 598 |
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bursty_three_epochs,4,20,720575940629319106,True,-66.25049783425419,3,17.599999999999994,17.599999999999994
|
| 599 |
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bursty_three_epochs,4,21,720575940629507706,True,-64.34276271665797,3,9.049999999999997,9.049999999999997
|
| 600 |
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bursty_three_epochs,4,22,720575940630331244,True,-65.84183256302907,3,17.400000000000006,17.400000000000006
|
| 601 |
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bursty_three_epochs,4,23,720575940630775891,False,-67.96271289110429,3,16.674999999999997,16.674999999999997
|
| 602 |
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bursty_three_epochs,4,24,720575940630923693,False,-68.4908206367517,3,19.700000000000003,19.700000000000003
|
| 603 |
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bursty_three_epochs,4,25,720575940632437331,True,-66.21353241319402,3,15.674999999999997,15.674999999999997
|
| 604 |
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bursty_three_epochs,4,26,720575940633103059,False,-67.75314240741051,3,14.525000000000006,14.525000000000006
|
| 605 |
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bursty_three_epochs,4,27,720575940634514533,False,-68.12572425068203,3,19.174999999999997,19.174999999999997
|
| 606 |
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bursty_three_epochs,4,28,720575940634664674,False,-67.89916127629908,3,20.075000000000003,20.075000000000003
|
| 607 |
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bursty_three_epochs,4,29,720575940643769544,False,-67.04968724329213,3,12.025000000000006,12.025000000000006
|
| 608 |
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bursty_three_epochs,4,30,720575940644413732,False,-68.26373556380267,3,18.575000000000003,18.575000000000003
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| 609 |
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bursty_three_epochs,4,31,720575940649022841,True,-63.10348541820859,3,11.599999999999994,11.599999999999994
|
| 610 |
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bursty_three_epochs,7,0,720575940606579465,False,-68.52556557362342,3,17.375,17.375
|
| 611 |
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bursty_three_epochs,7,1,720575940606698697,False,-67.44552512479498,3,14.474999999999994,14.474999999999994
|
| 612 |
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bursty_three_epochs,7,2,720575940615832577,True,-64.15505822722896,3,12.700000000000003,12.700000000000003
|
| 613 |
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bursty_three_epochs,7,3,720575940618341952,True,-64.48264831821507,3,11.0,11.0
|
| 614 |
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bursty_three_epochs,7,4,720575940618662939,False,-68.1042414476847,3,14.825000000000003,14.825000000000003
|
| 615 |
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bursty_three_epochs,7,5,720575940619077217,False,-68.3227927702492,3,17.0,17.0
|
| 616 |
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bursty_three_epochs,7,6,720575940619897734,False,-68.01977381829983,3,16.825000000000003,16.825000000000003
|
| 617 |
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bursty_three_epochs,7,7,720575940620333958,False,-67.61082259454375,3,13.525000000000006,13.525000000000006
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| 618 |
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bursty_three_epochs,7,8,720575940621606755,False,-68.5101208313627,3,17.625,17.625
|
| 619 |
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bursty_three_epochs,7,9,720575940621770010,True,-66.84994929482275,3,16.5,16.5
|
| 620 |
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bursty_three_epochs,7,10,720575940622003316,False,-68.23551145466028,3,16.799999999999997,16.799999999999997
|
| 621 |
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bursty_three_epochs,7,11,720575940622412838,False,-67.44408876202263,3,12.875,12.875
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| 622 |
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bursty_three_epochs,7,12,720575940622836455,True,-67.10761958184024,3,17.099999999999994,17.099999999999994
|
| 623 |
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bursty_three_epochs,7,13,720575940623973961,False,-68.1478840339002,3,17.5,17.5
|
| 624 |
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bursty_three_epochs,7,14,720575940624107755,False,-67.90775229476186,3,15.275000000000006,15.275000000000006
|
| 625 |
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bursty_three_epochs,7,15,720575940625328915,False,-67.93595598986882,3,15.674999999999997,15.674999999999997
|
| 626 |
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bursty_three_epochs,7,16,720575940625500304,False,-68.04634702267492,3,15.825000000000003,15.825000000000003
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| 627 |
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bursty_three_epochs,7,17,720575940626305028,True,-66.85581732303312,3,13.75,13.75
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| 628 |
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bursty_three_epochs,7,18,720575940627585028,False,-68.25844072046634,3,17.299999999999997,17.299999999999997
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| 629 |
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bursty_three_epochs,7,19,720575940627626244,False,-68.24939598000388,3,17.400000000000006,17.400000000000006
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| 630 |
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bursty_three_epochs,7,20,720575940629319106,True,-66.15075820369226,3,15.424999999999997,15.424999999999997
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| 631 |
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bursty_three_epochs,7,21,720575940629507706,True,-64.25677709511602,3,8.650000000000006,8.650000000000006
|
| 632 |
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bursty_three_epochs,7,22,720575940630331244,True,-65.79212168794481,3,15.099999999999994,15.099999999999994
|
| 633 |
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bursty_three_epochs,7,23,720575940630775891,False,-67.95243360029309,3,13.700000000000003,13.700000000000003
|
| 634 |
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bursty_three_epochs,7,24,720575940630923693,False,-68.47076525664129,3,17.349999999999994,17.349999999999994
|
| 635 |
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bursty_three_epochs,7,25,720575940632437331,True,-66.2581033128175,3,13.424999999999997,13.424999999999997
|
| 636 |
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bursty_three_epochs,7,26,720575940633103059,False,-67.6637793768692,3,11.650000000000006,11.650000000000006
|
| 637 |
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bursty_three_epochs,7,27,720575940634514533,False,-68.0874440493181,3,16.900000000000006,16.900000000000006
|
| 638 |
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bursty_three_epochs,7,28,720575940634664674,False,-67.92672730487841,3,17.525000000000006,17.525000000000006
|
| 639 |
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bursty_three_epochs,7,29,720575940643769544,False,-67.18049000261331,3,10.375,10.375
|
| 640 |
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bursty_three_epochs,7,30,720575940644413732,False,-68.27986954027548,3,15.775000000000006,15.775000000000006
|
| 641 |
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bursty_three_epochs,7,31,720575940649022841,True,-62.34916115736606,3,7.0,7.0
|
wu_20261107_anatomy_trace_article/source_data/cohort61.csv
ADDED
|
@@ -0,0 +1,62 @@
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| 1 |
+
root_id,candidate
|
| 2 |
+
720575940606579465,abp_R_K3_C0
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| 3 |
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720575940606698697,abp_R_K3_C0
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720575940615832577,abp_R_K3_C0
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720575940618341952,abp_R_K3_C0
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720575940618662939,abp_R_K3_C0
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720575940619077217,abp_R_K3_C0
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720575940619897734,abp_R_K3_C0
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720575940620333958,abp_R_K3_C0
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720575940622412838,abp_R_K3_C0
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720575940622836455,abp_R_K3_C0
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720575940623973961,abp_R_K3_C0
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720575940625328915,abp_R_K3_C0
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720575940625500304,abp_R_K3_C0
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720575940626305028,abp_R_K3_C0
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720575940627585028,abp_R_K3_C0
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720575940627626244,abp_R_K3_C0
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| 22 |
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720575940629319106,abp_R_K3_C0
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| 23 |
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720575940629507706,abp_R_K3_C0
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720575940630331244,abp_R_K3_C0
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| 25 |
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720575940630775891,abp_R_K3_C0
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720575940630923693,abp_R_K3_C0
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720575940632437331,abp_R_K3_C0
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720575940633103059,abp_R_K3_C0
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| 29 |
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720575940634514533,abp_R_K3_C0
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720575940634664674,abp_R_K3_C0
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720575940643769544,abp_R_K3_C0
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720575940644413732,abp_R_K3_C0
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| 33 |
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720575940649022841,abp_R_K3_C0
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| 34 |
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720575940607054770,abp_R_K3_C1
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720575940609371086,abp_R_K3_C1
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720575940610823010,abp_R_K3_C1
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720575940612767126,abp_R_K3_C1
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720575940615671494,abp_R_K3_C1
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720575940617478427,abp_R_K3_C1
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720575940617771521,abp_R_K3_C1
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720575940627085578,abp_R_K3_C1
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720575940631485251,abp_R_K3_C1
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720575940621762330,abp_R_K3_C2
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| 58 |
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720575940625126448,abp_R_K3_C2
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720575940626043454,abp_R_K3_C2
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| 61 |
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720575940630949187,abp_R_K3_C2
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| 62 |
+
720575940634969701,abp_R_K3_C2
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wu_20261107_anatomy_trace_article/source_data/conductance_runs.csv
ADDED
|
@@ -0,0 +1,29 @@
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| 1 |
+
condition,stage,mask,external_nS,recurrent_nS,n_KC_waveforms,n_responding_KC,n_internal_arrivals,n_MBON_arrivals,boundary_charge_pC,recurrent_charge_pC
|
| 2 |
+
balanced_ext0.0001_rec0.0001_m1,main,1,0.1,0.1,0,0,0,0,12.20979258116881,0.0
|
| 3 |
+
balanced_ext0.0001_rec0.0001_m1,fine,1,0.1,0.1,0,0,0,0,12.206676539676002,0.0
|
| 4 |
+
balanced_ext0.0001_rec0.0001_m2,main,2,0.1,0.1,0,0,0,0,12.111556422165542,0.0
|
| 5 |
+
balanced_ext0.0001_rec0.0001_m2,fine,2,0.1,0.1,0,0,0,0,12.108251505348306,0.0
|
| 6 |
+
balanced_ext0.0001_rec0.0001_m4,main,4,0.1,0.1,0,0,0,0,12.203102073732474,0.0
|
| 7 |
+
balanced_ext0.0001_rec0.0001_m4,fine,4,0.1,0.1,0,0,0,0,12.199974058082606,0.0
|
| 8 |
+
balanced_ext0.0001_rec0.0001_m7,main,7,0.1,0.1,0,0,0,0,12.708243873909472,0.0
|
| 9 |
+
balanced_ext0.0001_rec0.0001_m7,fine,7,0.1,0.1,0,0,0,0,12.704945865878074,0.0
|
| 10 |
+
balanced_ext0.001_rec0.001_m1,main,1,1.0,1.0,559,32,33037,2542,54.43858171426736,1161.3083885065018
|
| 11 |
+
balanced_ext0.001_rec0.001_m1,fine,1,1.0,1.0,559,32,33045,2542,54.45792939456894,1160.9393303163288
|
| 12 |
+
balanced_ext0.001_rec0.001_m2,main,2,1.0,1.0,0,0,0,0,60.44411708767916,0.0
|
| 13 |
+
balanced_ext0.001_rec0.001_m2,fine,2,1.0,1.0,0,0,0,0,60.42800858955131,0.0
|
| 14 |
+
balanced_ext0.001_rec0.001_m4,main,4,1.0,1.0,0,0,0,0,62.1010204597146,0.0
|
| 15 |
+
balanced_ext0.001_rec0.001_m4,fine,4,1.0,1.0,0,0,0,0,62.090717349977595,0.0
|
| 16 |
+
balanced_ext0.001_rec0.001_m7,main,7,1.0,1.0,559,32,33153,2542,57.92225855531861,1158.2160979166079
|
| 17 |
+
balanced_ext0.001_rec0.001_m7,fine,7,1.0,1.0,559,32,33149,2542,57.90877473023731,1158.1257308524168
|
| 18 |
+
balanced_ext0.001_rec0.0001_m1,main,1,1.0,0.1,18,1,954,54,62.52033755451225,12.64036857605222
|
| 19 |
+
balanced_ext0.001_rec0.0001_m2,main,2,1.0,0.1,0,0,0,0,60.44411708767916,0.0
|
| 20 |
+
balanced_ext0.001_rec0.0001_m4,main,4,1.0,0.1,0,0,0,0,62.1010204597146,0.0
|
| 21 |
+
balanced_ext0.001_rec0.0001_m7,main,7,1.0,0.1,18,1,889,54,66.06647195725434,11.857721307216675
|
| 22 |
+
balanced_ext0.0001_rec0.001_m1,main,1,0.1,1.0,0,0,0,0,12.20979258116881,0.0
|
| 23 |
+
balanced_ext0.0001_rec0.001_m1,fine,1,0.1,1.0,0,0,0,0,12.206676539676002,0.0
|
| 24 |
+
balanced_ext0.0001_rec0.001_m2,main,2,0.1,1.0,0,0,0,0,12.111556422165542,0.0
|
| 25 |
+
balanced_ext0.0001_rec0.001_m2,fine,2,0.1,1.0,0,0,0,0,12.108251505348306,0.0
|
| 26 |
+
balanced_ext0.0001_rec0.001_m4,main,4,0.1,1.0,0,0,0,0,12.203102073732474,0.0
|
| 27 |
+
balanced_ext0.0001_rec0.001_m4,fine,4,0.1,1.0,0,0,0,0,12.199974058082606,0.0
|
| 28 |
+
balanced_ext0.0001_rec0.001_m7,main,7,0.1,1.0,0,0,0,0,12.708243873909472,0.0
|
| 29 |
+
balanced_ext0.0001_rec0.001_m7,fine,7,0.1,1.0,0,0,0,0,12.704945865878074,0.0
|
wu_20261107_anatomy_trace_article/source_data/contrast_summary.csv
ADDED
|
@@ -0,0 +1,16 @@
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
| 1 |
+
schedule,group,n_cells,mean_voltage_ABC_minus_mean_mV,mean_voltage_ABC_minus_best_mV,total_count_ABC_minus_best,n_count_contrast_positive,n_count_contrast_zero,n_count_contrast_negative,n_distinct_binary_supports
|
| 2 |
+
synchronous,all32,32,11.727163570552245,0.025065063633332274,0,0,32,0,1
|
| 3 |
+
synchronous,eligible10,10,10.929856023639687,0.1680583984099968,0,0,10,0,1
|
| 4 |
+
synchronous,indirect22,22,12.089576091876133,-0.03993190671969706,0,0,22,0,1
|
| 5 |
+
jittered_seed20261106,all32,32,11.934344747373629,0.8120191764634428,27,28,3,1,1
|
| 6 |
+
jittered_seed20261106,eligible10,10,11.217466178486056,0.7991909894859617,7,8,1,1,1
|
| 7 |
+
jittered_seed20261106,indirect22,22,12.260198642322523,0.817850170544116,20,20,2,0,1
|
| 8 |
+
jittered_seed20261107,all32,32,9.829837624422112,0.9581153389496793,29,28,3,1,1
|
| 9 |
+
jittered_seed20261107,eligible10,10,9.331069158254063,1.1255483133554172,8,7,2,1,1
|
| 10 |
+
jittered_seed20261107,indirect22,22,10.056550563589406,0.8820094414925257,21,21,1,0,1
|
| 11 |
+
jittered_seed20261108,all32,32,9.689203278907026,-0.9728164921998199,-29,1,2,29,1
|
| 12 |
+
jittered_seed20261108,eligible10,10,9.145694302124406,-0.8536956354091366,-8,1,1,8,1
|
| 13 |
+
jittered_seed20261108,indirect22,22,9.936252813808217,-1.026962336195585,-21,0,1,21,1
|
| 14 |
+
bursty_three_epochs,all32,32,0.04795857196481923,-0.0014236698706024953,0,0,32,0,1
|
| 15 |
+
bursty_three_epochs,eligible10,10,0.16432944386046913,0.06258243490109408,0,0,10,0,1
|
| 16 |
+
bursty_three_epochs,indirect22,22,-0.004937278896839814,-0.0305173538577373,0,0,22,0,1
|
wu_20261107_anatomy_trace_article/source_data/crossbrain_models.csv
ADDED
|
@@ -0,0 +1,17 @@
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|
|
|
|
|
|
|
|
|
| 1 |
+
direction,arm,alpha,n_target_cells,mean_hellinger2,mean_source_unseen_target_fraction,target_vocab_including_OTHER
|
| 2 |
+
FlyWire_v783_to_MaleCNS_v1_0,source_mean,,129,0.049278233479816344,0.0005945241150672144,16
|
| 3 |
+
FlyWire_v783_to_MaleCNS_v1_0,continuous,10.0,129,0.07024490484900327,0.0005945241150672144,16
|
| 4 |
+
FlyWire_v783_to_MaleCNS_v1_0,GP,10.0,129,0.08317423767044879,0.0005945241150672144,16
|
| 5 |
+
FlyWire_v783_to_MaleCNS_v1_0,GPJ,10.0,129,0.08151030686342191,0.0005945241150672144,16
|
| 6 |
+
FlyWire_v783_to_MaleCNS_v1_0,GP,1.0,129,0.1113017790796112,0.0005945241150672144,16
|
| 7 |
+
FlyWire_v783_to_MaleCNS_v1_0,GPJ,1.0,129,0.10374359234573285,0.0005945241150672144,16
|
| 8 |
+
FlyWire_v783_to_MaleCNS_v1_0,GP,100.0,129,0.055010234524696056,0.0005945241150672144,16
|
| 9 |
+
FlyWire_v783_to_MaleCNS_v1_0,GPJ,100.0,129,0.05489263501082258,0.0005945241150672144,16
|
| 10 |
+
MaleCNS_v1_0_to_FlyWire_v783,source_mean,,128,0.07254512987494431,0.0010207999465811964,16
|
| 11 |
+
MaleCNS_v1_0_to_FlyWire_v783,continuous,10.0,128,0.08474478108262379,0.0010207999465811964,16
|
| 12 |
+
MaleCNS_v1_0_to_FlyWire_v783,GP,10.0,128,0.07273777359431816,0.0010207999465811964,16
|
| 13 |
+
MaleCNS_v1_0_to_FlyWire_v783,GPJ,10.0,128,0.07231595641917626,0.0010207999465811964,16
|
| 14 |
+
MaleCNS_v1_0_to_FlyWire_v783,GP,1.0,128,0.07526941630598669,0.0010207999465811964,16
|
| 15 |
+
MaleCNS_v1_0_to_FlyWire_v783,GPJ,1.0,128,0.08138690943607722,0.0010207999465811964,16
|
| 16 |
+
MaleCNS_v1_0_to_FlyWire_v783,GP,100.0,128,0.07141466602612129,0.0010207999465811964,16
|
| 17 |
+
MaleCNS_v1_0_to_FlyWire_v783,GPJ,100.0,128,0.0712251409730475,0.0010207999465811964,16
|
wu_20261107_anatomy_trace_article/source_data/eligibility.csv
ADDED
|
@@ -0,0 +1,33 @@
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
root_id,ALPN,directVPN,operationalLVIN,eligible_three_families,common_contact_budget
|
| 2 |
+
720575940606579465,0,1,52,False,0
|
| 3 |
+
720575940606698697,0,9,23,False,0
|
| 4 |
+
720575940615832577,7,8,15,True,7
|
| 5 |
+
720575940618341952,7,14,12,True,7
|
| 6 |
+
720575940618662939,0,4,13,False,0
|
| 7 |
+
720575940619077217,4,0,37,False,0
|
| 8 |
+
720575940619897734,0,1,61,False,0
|
| 9 |
+
720575940620333958,2,0,64,False,0
|
| 10 |
+
720575940621606755,0,0,49,False,0
|
| 11 |
+
720575940621770010,1,16,14,True,1
|
| 12 |
+
720575940622003316,0,3,44,False,0
|
| 13 |
+
720575940622412838,0,0,35,False,0
|
| 14 |
+
720575940622836455,1,29,19,True,1
|
| 15 |
+
720575940623973961,0,0,58,False,0
|
| 16 |
+
720575940624107755,0,1,46,False,0
|
| 17 |
+
720575940625328915,0,1,38,False,0
|
| 18 |
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720575940625500304,0,0,48,False,0
|
| 19 |
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720575940626305028,1,4,38,True,1
|
| 20 |
+
720575940627585028,0,3,39,False,0
|
| 21 |
+
720575940627626244,0,6,24,False,0
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| 22 |
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720575940629319106,2,5,22,True,2
|
| 23 |
+
720575940629507706,7,10,10,True,7
|
| 24 |
+
720575940630331244,3,8,33,True,3
|
| 25 |
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720575940630775891,0,0,59,False,0
|
| 26 |
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720575940630923693,0,2,44,False,0
|
| 27 |
+
720575940632437331,2,7,24,True,2
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| 28 |
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720575940633103059,0,0,64,False,0
|
| 29 |
+
720575940634514533,0,21,1,False,0
|
| 30 |
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720575940634664674,0,5,16,False,0
|
| 31 |
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720575940643769544,0,6,39,False,0
|
| 32 |
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720575940644413732,0,1,29,False,0
|
| 33 |
+
720575940649022841,25,31,28,True,25
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