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| """ PyTorch Feature Extraction Helpers | |
| A collection of classes, functions, modules to help extract features from models | |
| and provide a common interface for describing them. | |
| The return_layers, module re-writing idea inspired by torchvision IntermediateLayerGetter | |
| https://github.com/pytorch/vision/blob/d88d8961ae51507d0cb680329d985b1488b1b76b/torchvision/models/_utils.py | |
| Hacked together by / Copyright 2020 Ross Wightman | |
| """ | |
| from collections import OrderedDict, defaultdict | |
| from copy import deepcopy | |
| from functools import partial | |
| from typing import Dict, List, Optional, Sequence, Tuple, Union | |
| import torch | |
| import torch.nn as nn | |
| from timm.layers import Format, _assert | |
| from ._manipulate import checkpoint | |
| __all__ = [ | |
| 'FeatureInfo', 'FeatureHooks', 'FeatureDictNet', 'FeatureListNet', 'FeatureHookNet', 'FeatureGetterNet', | |
| 'feature_take_indices' | |
| ] | |
| def feature_take_indices( | |
| num_features: int, | |
| indices: Optional[Union[int, List[int]]] = None, | |
| as_set: bool = False, | |
| ) -> Tuple[List[int], int]: | |
| """ Determine the absolute feature indices to 'take' from. | |
| Note: This function can be called in forward() so must be torchscript compatible, | |
| which requires some incomplete typing and workaround hacks. | |
| Args: | |
| num_features: total number of features to select from | |
| indices: indices to select, | |
| None -> select all | |
| int -> select last n | |
| list/tuple of int -> return specified (-ve indices specify from end) | |
| as_set: return as a set | |
| Returns: | |
| List (or set) of absolute (from beginning) indices, Maximum index | |
| """ | |
| if indices is None: | |
| indices = num_features # all features if None | |
| if isinstance(indices, int): | |
| # convert int -> last n indices | |
| _assert(0 < indices <= num_features, f'last-n ({indices}) is out of range (1 to {num_features})') | |
| take_indices = [num_features - indices + i for i in range(indices)] | |
| else: | |
| take_indices: List[int] = [] | |
| for i in indices: | |
| idx = num_features + i if i < 0 else i | |
| _assert(0 <= idx < num_features, f'feature index {idx} is out of range (0 to {num_features - 1})') | |
| take_indices.append(idx) | |
| if not torch.jit.is_scripting() and as_set: | |
| return set(take_indices), max(take_indices) | |
| return take_indices, max(take_indices) | |
| def _out_indices_as_tuple(x: Union[int, Tuple[int, ...]]) -> Tuple[int, ...]: | |
| if isinstance(x, int): | |
| # if indices is an int, take last N features | |
| return tuple(range(-x, 0)) | |
| return tuple(x) | |
| OutIndicesT = Union[int, Tuple[int, ...]] | |
| class FeatureInfo: | |
| def __init__( | |
| self, | |
| feature_info: List[Dict], | |
| out_indices: OutIndicesT, | |
| ): | |
| out_indices = _out_indices_as_tuple(out_indices) | |
| prev_reduction = 1 | |
| for i, fi in enumerate(feature_info): | |
| # sanity check the mandatory fields, there may be additional fields depending on the model | |
| assert 'num_chs' in fi and fi['num_chs'] > 0 | |
| assert 'reduction' in fi and fi['reduction'] >= prev_reduction | |
| prev_reduction = fi['reduction'] | |
| assert 'module' in fi | |
| fi.setdefault('index', i) | |
| self.out_indices = out_indices | |
| self.info = feature_info | |
| def from_other(self, out_indices: OutIndicesT): | |
| out_indices = _out_indices_as_tuple(out_indices) | |
| return FeatureInfo(deepcopy(self.info), out_indices) | |
| def get(self, key: str, idx: Optional[Union[int, List[int]]] = None): | |
| """ Get value by key at specified index (indices) | |
| if idx == None, returns value for key at each output index | |
| if idx is an integer, return value for that feature module index (ignoring output indices) | |
| if idx is a list/tuple, return value for each module index (ignoring output indices) | |
| """ | |
| if idx is None: | |
| return [self.info[i][key] for i in self.out_indices] | |
| if isinstance(idx, (tuple, list)): | |
| return [self.info[i][key] for i in idx] | |
| else: | |
| return self.info[idx][key] | |
| def get_dicts(self, keys: Optional[List[str]] = None, idx: Optional[Union[int, List[int]]] = None): | |
| """ return info dicts for specified keys (or all if None) at specified indices (or out_indices if None) | |
| """ | |
| if idx is None: | |
| if keys is None: | |
| return [self.info[i] for i in self.out_indices] | |
| else: | |
| return [{k: self.info[i][k] for k in keys} for i in self.out_indices] | |
| if isinstance(idx, (tuple, list)): | |
| return [self.info[i] if keys is None else {k: self.info[i][k] for k in keys} for i in idx] | |
| else: | |
| return self.info[idx] if keys is None else {k: self.info[idx][k] for k in keys} | |
| def channels(self, idx: Optional[Union[int, List[int]]] = None): | |
| """ feature channels accessor | |
| """ | |
| return self.get('num_chs', idx) | |
| def reduction(self, idx: Optional[Union[int, List[int]]] = None): | |
| """ feature reduction (output stride) accessor | |
| """ | |
| return self.get('reduction', idx) | |
| def module_name(self, idx: Optional[Union[int, List[int]]] = None): | |
| """ feature module name accessor | |
| """ | |
| return self.get('module', idx) | |
| def __getitem__(self, item): | |
| return self.info[item] | |
| def __len__(self): | |
| return len(self.info) | |
| class FeatureHooks: | |
| """ Feature Hook Helper | |
| This module helps with the setup and extraction of hooks for extracting features from | |
| internal nodes in a model by node name. | |
| FIXME This works well in eager Python but needs redesign for torchscript. | |
| """ | |
| def __init__( | |
| self, | |
| hooks: Sequence[Union[str, Dict]], | |
| named_modules: dict, | |
| out_map: Sequence[Union[int, str]] = None, | |
| default_hook_type: str = 'forward', | |
| ): | |
| # setup feature hooks | |
| self._feature_outputs = defaultdict(OrderedDict) | |
| self._handles = [] | |
| modules = {k: v for k, v in named_modules} | |
| for i, h in enumerate(hooks): | |
| hook_name = h if isinstance(h, str) else h['module'] | |
| m = modules[hook_name] | |
| hook_id = out_map[i] if out_map else hook_name | |
| hook_fn = partial(self._collect_output_hook, hook_id) | |
| hook_type = default_hook_type | |
| if isinstance(h, dict): | |
| hook_type = h.get('hook_type', default_hook_type) | |
| if hook_type == 'forward_pre': | |
| handle = m.register_forward_pre_hook(hook_fn) | |
| elif hook_type == 'forward': | |
| handle = m.register_forward_hook(hook_fn) | |
| else: | |
| assert False, "Unsupported hook type" | |
| self._handles.append(handle) | |
| def _collect_output_hook(self, hook_id, *args): | |
| x = args[-1] # tensor we want is last argument, output for fwd, input for fwd_pre | |
| if isinstance(x, tuple): | |
| x = x[0] # unwrap input tuple | |
| self._feature_outputs[x.device][hook_id] = x | |
| def get_output(self, device) -> Dict[str, torch.tensor]: | |
| output = self._feature_outputs[device] | |
| self._feature_outputs[device] = OrderedDict() # clear after reading | |
| return output | |
| def _module_list(module, flatten_sequential=False): | |
| # a yield/iter would be better for this but wouldn't be compatible with torchscript | |
| ml = [] | |
| for name, module in module.named_children(): | |
| if flatten_sequential and isinstance(module, nn.Sequential): | |
| # first level of Sequential containers is flattened into containing model | |
| for child_name, child_module in module.named_children(): | |
| combined = [name, child_name] | |
| ml.append(('_'.join(combined), '.'.join(combined), child_module)) | |
| else: | |
| ml.append((name, name, module)) | |
| return ml | |
| def _get_feature_info(net, out_indices: OutIndicesT): | |
| feature_info = getattr(net, 'feature_info') | |
| if isinstance(feature_info, FeatureInfo): | |
| return feature_info.from_other(out_indices) | |
| elif isinstance(feature_info, (list, tuple)): | |
| return FeatureInfo(net.feature_info, out_indices) | |
| else: | |
| assert False, "Provided feature_info is not valid" | |
| def _get_return_layers(feature_info, out_map): | |
| module_names = feature_info.module_name() | |
| return_layers = {} | |
| for i, name in enumerate(module_names): | |
| return_layers[name] = out_map[i] if out_map is not None else feature_info.out_indices[i] | |
| return return_layers | |
| class FeatureDictNet(nn.ModuleDict): | |
| """ Feature extractor with OrderedDict return | |
| Wrap a model and extract features as specified by the out indices, the network is | |
| partially re-built from contained modules. | |
| There is a strong assumption that the modules have been registered into the model in the same | |
| order as they are used. There should be no reuse of the same nn.Module more than once, including | |
| trivial modules like `self.relu = nn.ReLU`. | |
| Only submodules that are directly assigned to the model class (`model.feature1`) or at most | |
| one Sequential container deep (`model.features.1`, with flatten_sequent=True) can be captured. | |
| All Sequential containers that are directly assigned to the original model will have their | |
| modules assigned to this module with the name `model.features.1` being changed to `model.features_1` | |
| """ | |
| def __init__( | |
| self, | |
| model: nn.Module, | |
| out_indices: OutIndicesT = (0, 1, 2, 3, 4), | |
| out_map: Sequence[Union[int, str]] = None, | |
| output_fmt: str = 'NCHW', | |
| feature_concat: bool = False, | |
| flatten_sequential: bool = False, | |
| ): | |
| """ | |
| Args: | |
| model: Model from which to extract features. | |
| out_indices: Output indices of the model features to extract. | |
| out_map: Return id mapping for each output index, otherwise str(index) is used. | |
| feature_concat: Concatenate intermediate features that are lists or tuples instead of selecting | |
| first element e.g. `x[0]` | |
| flatten_sequential: Flatten first two-levels of sequential modules in model (re-writes model modules) | |
| """ | |
| super(FeatureDictNet, self).__init__() | |
| self.feature_info = _get_feature_info(model, out_indices) | |
| self.output_fmt = Format(output_fmt) | |
| self.concat = feature_concat | |
| self.grad_checkpointing = False | |
| self.return_layers = {} | |
| return_layers = _get_return_layers(self.feature_info, out_map) | |
| modules = _module_list(model, flatten_sequential=flatten_sequential) | |
| remaining = set(return_layers.keys()) | |
| layers = OrderedDict() | |
| for new_name, old_name, module in modules: | |
| layers[new_name] = module | |
| if old_name in remaining: | |
| # return id has to be consistently str type for torchscript | |
| self.return_layers[new_name] = str(return_layers[old_name]) | |
| remaining.remove(old_name) | |
| if not remaining: | |
| break | |
| assert not remaining and len(self.return_layers) == len(return_layers), \ | |
| f'Return layers ({remaining}) are not present in model' | |
| self.update(layers) | |
| def set_grad_checkpointing(self, enable: bool = True): | |
| self.grad_checkpointing = enable | |
| def _collect(self, x) -> (Dict[str, torch.Tensor]): | |
| out = OrderedDict() | |
| for i, (name, module) in enumerate(self.items()): | |
| if self.grad_checkpointing and not torch.jit.is_scripting(): | |
| # Skipping checkpoint of first module because need a gradient at input | |
| # Skipping last because networks with in-place ops might fail w/ checkpointing enabled | |
| # NOTE: first_or_last module could be static, but recalc in is_scripting guard to avoid jit issues | |
| first_or_last_module = i == 0 or i == max(len(self) - 1, 0) | |
| x = module(x) if first_or_last_module else checkpoint(module, x) | |
| else: | |
| x = module(x) | |
| if name in self.return_layers: | |
| out_id = self.return_layers[name] | |
| if isinstance(x, (tuple, list)): | |
| # If model tap is a tuple or list, concat or select first element | |
| # FIXME this may need to be more generic / flexible for some nets | |
| out[out_id] = torch.cat(x, 1) if self.concat else x[0] | |
| else: | |
| out[out_id] = x | |
| return out | |
| def forward(self, x) -> Dict[str, torch.Tensor]: | |
| return self._collect(x) | |
| class FeatureListNet(FeatureDictNet): | |
| """ Feature extractor with list return | |
| A specialization of FeatureDictNet that always returns features as a list (values() of dict). | |
| """ | |
| def __init__( | |
| self, | |
| model: nn.Module, | |
| out_indices: OutIndicesT = (0, 1, 2, 3, 4), | |
| output_fmt: str = 'NCHW', | |
| feature_concat: bool = False, | |
| flatten_sequential: bool = False, | |
| ): | |
| """ | |
| Args: | |
| model: Model from which to extract features. | |
| out_indices: Output indices of the model features to extract. | |
| feature_concat: Concatenate intermediate features that are lists or tuples instead of selecting | |
| first element e.g. `x[0]` | |
| flatten_sequential: Flatten first two-levels of sequential modules in model (re-writes model modules) | |
| """ | |
| super().__init__( | |
| model, | |
| out_indices=out_indices, | |
| output_fmt=output_fmt, | |
| feature_concat=feature_concat, | |
| flatten_sequential=flatten_sequential, | |
| ) | |
| def forward(self, x) -> (List[torch.Tensor]): | |
| return list(self._collect(x).values()) | |
| class FeatureHookNet(nn.ModuleDict): | |
| """ FeatureHookNet | |
| Wrap a model and extract features specified by the out indices using forward/forward-pre hooks. | |
| If `no_rewrite` is True, features are extracted via hooks without modifying the underlying | |
| network in any way. | |
| If `no_rewrite` is False, the model will be re-written as in the | |
| FeatureList/FeatureDict case by folding first to second (Sequential only) level modules into this one. | |
| FIXME this does not currently work with Torchscript, see FeatureHooks class | |
| """ | |
| def __init__( | |
| self, | |
| model: nn.Module, | |
| out_indices: OutIndicesT = (0, 1, 2, 3, 4), | |
| out_map: Optional[Sequence[Union[int, str]]] = None, | |
| return_dict: bool = False, | |
| output_fmt: str = 'NCHW', | |
| no_rewrite: Optional[bool] = None, | |
| flatten_sequential: bool = False, | |
| default_hook_type: str = 'forward', | |
| ): | |
| """ | |
| Args: | |
| model: Model from which to extract features. | |
| out_indices: Output indices of the model features to extract. | |
| out_map: Return id mapping for each output index, otherwise str(index) is used. | |
| return_dict: Output features as a dict. | |
| no_rewrite: Enforce that model is not re-written if True, ie no modules are removed / changed. | |
| flatten_sequential arg must also be False if this is set True. | |
| flatten_sequential: Re-write modules by flattening first two levels of nn.Sequential containers. | |
| default_hook_type: The default hook type to use if not specified in model.feature_info. | |
| """ | |
| super().__init__() | |
| assert not torch.jit.is_scripting() | |
| self.feature_info = _get_feature_info(model, out_indices) | |
| self.return_dict = return_dict | |
| self.output_fmt = Format(output_fmt) | |
| self.grad_checkpointing = False | |
| if no_rewrite is None: | |
| no_rewrite = not flatten_sequential | |
| layers = OrderedDict() | |
| hooks = [] | |
| if no_rewrite: | |
| assert not flatten_sequential | |
| if hasattr(model, 'reset_classifier'): # make sure classifier is removed? | |
| model.reset_classifier(0) | |
| layers['body'] = model | |
| hooks.extend(self.feature_info.get_dicts()) | |
| else: | |
| modules = _module_list(model, flatten_sequential=flatten_sequential) | |
| remaining = { | |
| f['module']: f['hook_type'] if 'hook_type' in f else default_hook_type | |
| for f in self.feature_info.get_dicts() | |
| } | |
| for new_name, old_name, module in modules: | |
| layers[new_name] = module | |
| for fn, fm in module.named_modules(prefix=old_name): | |
| if fn in remaining: | |
| hooks.append(dict(module=fn, hook_type=remaining[fn])) | |
| del remaining[fn] | |
| if not remaining: | |
| break | |
| assert not remaining, f'Return layers ({remaining}) are not present in model' | |
| self.update(layers) | |
| self.hooks = FeatureHooks(hooks, model.named_modules(), out_map=out_map) | |
| def set_grad_checkpointing(self, enable: bool = True): | |
| self.grad_checkpointing = enable | |
| def forward(self, x): | |
| for i, (name, module) in enumerate(self.items()): | |
| if self.grad_checkpointing and not torch.jit.is_scripting(): | |
| # Skipping checkpoint of first module because need a gradient at input | |
| # Skipping last because networks with in-place ops might fail w/ checkpointing enabled | |
| # NOTE: first_or_last module could be static, but recalc in is_scripting guard to avoid jit issues | |
| first_or_last_module = i == 0 or i == max(len(self) - 1, 0) | |
| x = module(x) if first_or_last_module else checkpoint(module, x) | |
| else: | |
| x = module(x) | |
| out = self.hooks.get_output(x.device) | |
| return out if self.return_dict else list(out.values()) | |
| class FeatureGetterNet(nn.ModuleDict): | |
| """ FeatureGetterNet | |
| Wrap models with a feature getter method, like 'get_intermediate_layers' | |
| """ | |
| def __init__( | |
| self, | |
| model: nn.Module, | |
| out_indices: OutIndicesT = 4, | |
| out_map: Optional[Sequence[Union[int, str]]] = None, | |
| return_dict: bool = False, | |
| output_fmt: str = 'NCHW', | |
| norm: bool = False, | |
| prune: bool = True, | |
| ): | |
| """ | |
| Args: | |
| model: Model to wrap. | |
| out_indices: Indices of features to extract. | |
| out_map: Remap feature names for dict output (WIP, not supported). | |
| return_dict: Return features as dictionary instead of list (WIP, not supported). | |
| norm: Apply final model norm to all output features (if possible). | |
| """ | |
| super().__init__() | |
| if prune and hasattr(model, 'prune_intermediate_layers'): | |
| # replace out_indices after they've been normalized, -ve indices will be invalid after prune | |
| out_indices = model.prune_intermediate_layers( | |
| out_indices, | |
| prune_norm=not norm, | |
| ) | |
| self.feature_info = _get_feature_info(model, out_indices) | |
| self.model = model | |
| self.out_indices = out_indices | |
| self.out_map = out_map | |
| self.return_dict = return_dict | |
| self.output_fmt = Format(output_fmt) | |
| self.norm = norm | |
| def forward(self, x): | |
| features = self.model.forward_intermediates( | |
| x, | |
| indices=self.out_indices, | |
| norm=self.norm, | |
| output_fmt=self.output_fmt, | |
| intermediates_only=True, | |
| ) | |
| return features | |