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https://huggingface.co/datasets/denghanning/COMP8800_Research_Project/resolve/main/archive.py
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5.71 kB
| #!/usr/bin/env python3 | |
| """List, verify or restore the independent SHA256 + zstd experiment archive.""" | |
| import argparse,hashlib,json,os,shutil,sqlite3,sys,io | |
| from pathlib import Path | |
| import zstandard as zstd | |
| ROOT=Path(__file__).resolve().parent | |
| class BoundedReader: | |
| def __init__(self,path,offset,length):self.file=path.open('rb');self.file.seek(offset);self.remaining=length | |
| def read(self,n=-1): | |
| n=self.remaining if n<0 else min(n,self.remaining) | |
| data=self.file.read(n);self.remaining-=len(data);return data | |
| def readable(self):return True | |
| def close(self):self.file.close() | |
| def __enter__(self):return self | |
| def __exit__(self,*args):self.close() | |
| def safe(root,name): | |
| p=root/name | |
| if Path(name).is_absolute() or '..' in Path(name).parts:raise ValueError(name) | |
| if not p.resolve().is_relative_to(root.resolve()):raise ValueError('Path escapes destination: '+name) | |
| return p | |
| def main(): | |
| global ROOT | |
| ap=argparse.ArgumentParser(description=__doc__) | |
| ap.add_argument('action',choices=['list','verify','restore']) | |
| ap.add_argument('--archive-root',type=Path,help='Checkpoint dataset directory; defaults to this script directory') | |
| ap.add_argument('--prefix',action='append',default=[],help='Package-relative source prefix; repeat for multiple roots') | |
| ap.add_argument('--release',choices=['KeyCorridor','MiniGridLoCA','DeepSea','SecureCourier']) | |
| ap.add_argument('--output',type=Path,help='New restore directory; never overwrite existing data') | |
| a=ap.parse_args() | |
| if a.archive_root:ROOT=a.archive_root.resolve() | |
| prefixes=a.prefix[:] | |
| if a.release:prefixes.append(a.release) | |
| db=sqlite3.connect('file:'+str(ROOT/'manifest.sqlite')+'?mode=ro',uri=True) | |
| if db.execute('PRAGMA integrity_check').fetchone()[0]!='ok':raise RuntimeError('Manifest database is corrupt') | |
| db.row_factory=sqlite3.Row | |
| selected={r['path']:dict(r) for r in db.execute('SELECT * FROM files') if not prefixes or any(r['path']==p or r['path'].startswith(p.rstrip('/')+'/') for p in prefixes)} | |
| if not selected:raise RuntimeError('No matching files') | |
| select_all=not prefixes | |
| links=json.loads((ROOT/'LINKS.json').read_text()) | |
| chosen=[] | |
| # Close selected directory links recursively before restoring any bytes. | |
| for _ in range(len(links)+1): | |
| changed=False | |
| for link in links: | |
| name=link.get('archive_path');target=link.get('archive_target') | |
| if not name or not target or link in chosen:continue | |
| if select_all or any(name==p or name.startswith(p.rstrip('/')+'/') for p in prefixes): | |
| chosen.append(link);prefixes.append(target);changed=True | |
| for r in db.execute('SELECT * FROM files WHERE path=? OR path LIKE ?', (target,target+'/%')):selected[r['path']]=dict(r) | |
| if not changed:break | |
| unique={r['sha256']:r for r in selected.values()} | |
| restore_groups={(r['sha256'],r['mode'],r['mtime_ns']):r['bytes'] for r in selected.values()} | |
| summary={'estimated_restored_bytes':sum(restore_groups.values()),'files':len(selected),'checkpoint_candidate_paths':sum(r['checkpoint_candidate'] for r in selected.values()),'unique_objects':len(unique),'logical_bytes':sum(r['bytes'] for r in selected.values()),'unique_bytes':sum(r['bytes'] for r in unique.values()),'links':len(chosen)} | |
| print(json.dumps(summary),flush=True) | |
| if a.action=='list':return | |
| if a.action=='restore': | |
| if a.output is None:ap.error('--output is required') | |
| out=a.output.absolute() | |
| if out.exists():raise FileExistsError(out) | |
| out.parent.mkdir(parents=True,exist_ok=True) | |
| if shutil.disk_usage(out.parent).free<summary['estimated_restored_bytes']+2**30:raise RuntimeError('Not enough space for independent restored files') | |
| out.mkdir();restored={} | |
| for i,(sha,r) in enumerate(unique.items()): | |
| blob=ROOT/'objects'/sha[:2]/(sha+'.zst') | |
| if blob.exists():source=blob.open('rb') | |
| else: | |
| record=db.execute('SELECT shard,offset,length FROM objects WHERE sha256=?',(sha,)).fetchone() | |
| if record is None:raise FileNotFoundError(sha) | |
| source=BoundedReader(ROOT/record[0],record[1],record[2]) | |
| h=hashlib.sha256();count=0;dest=None;writer=None | |
| if a.action=='restore': | |
| dest=safe(out,r['path']);dest.parent.mkdir(parents=True,exist_ok=True);writer=dest.open('xb') | |
| try: | |
| with source as f,zstd.ZstdDecompressor().stream_reader(f) as stream: | |
| for b in iter(lambda:stream.read(8<<20),b''): | |
| h.update(b);count+=len(b) | |
| if writer:writer.write(b) | |
| finally: | |
| if writer:writer.close() | |
| if h.hexdigest()!=sha or count!=r['bytes']:raise RuntimeError('Payload verification failed: '+sha) | |
| if dest: | |
| dest.chmod(r['mode']);os.utime(dest,ns=(r['mtime_ns'],r['mtime_ns']));restored[sha]=dest | |
| if (i+1)%2000==0:print('Verified objects:',i+1,'/',len(unique),flush=True) | |
| if a.action=='restore': | |
| copies={(sha,r['mode'],r['mtime_ns']):restored[sha] for sha,r in unique.items()} | |
| for r in selected.values(): | |
| first=restored[r['sha256']];dest=safe(out,r['path']) | |
| if dest==first:continue | |
| dest.parent.mkdir(parents=True,exist_ok=True) | |
| key=(r['sha256'],r['mode'],r['mtime_ns']) | |
| # Deduplicate only files with matching content and metadata within this tree. | |
| if key in copies:os.link(copies[key],dest) | |
| else: | |
| shutil.copyfile(first,dest);dest.chmod(r['mode']);os.utime(dest,ns=(r['mtime_ns'],r['mtime_ns']));copies[key]=dest | |
| for link in sorted(chosen,key=lambda x:len(Path(x['archive_path']).parts)): | |
| dst=safe(out,link['archive_path']);target=safe(out,link['archive_target']) | |
| dst.parent.mkdir(parents=True,exist_ok=True) | |
| if os.path.lexists(dst):raise FileExistsError(dst) | |
| dst.symlink_to(os.path.relpath(target,dst.parent)) | |
| (out/'RESTORE_REPORT.json').write_text(json.dumps({'status':'PASS',**summary,'source_archive':str(ROOT)},indent=2)+'\n') | |
| print('PASS:',a.action,flush=True) | |
| if __name__=='__main__':main() | |