repo stringclasses 454
values | file_path stringlengths 5 201 | extension stringclasses 1
value | content stringlengths 8 509k | num_lines int64 3 16.9k | size_bytes int64 8 511k |
|---|---|---|---|---|---|
jupytext | tests/external/contents_manager/test_contentsmanager_external.py | .py | import re
import pytest
from jupyter_server.utils import ensure_async
import jupytext
from jupytext.compare import compare_notebooks, notebook_model
pytestmark = pytest.mark.asyncio
@pytest.mark.requires_pandoc
async def test_save_load_paired_md_pandoc_notebook(ipynb_py_R_jl_file, tmpdir, cm):
if re.match(r".*... | 54 | 1,782 |
jupytext | tests/external/cli/test_black.py | .py | import os
from copy import deepcopy
from shutil import copyfile
import pytest
from nbformat.v4.nbbase import new_code_cell, new_notebook
from jupytext import read, write
from jupytext.cli import jupytext, pipe_notebook, system
from jupytext.combine import black_invariant
from jupytext.compare import compare, compare_... | 288 | 8,843 |
jupytext | tests/external/cli/test_isort.py | .py | import pytest
from jupytext import reads, writes
from jupytext.cli import pipe_notebook
from jupytext.compare import compare
@pytest.mark.requires_isort
def test_pipe_into_isort():
text_org = """# %%
import numpy as np
np.array([1,2,3])
# %%
import pandas as pd
pd.Series([1,2,3])
# %%
# This is a comment on th... | 42 | 786 |
jupytext | tests/external/cli/test_cli_check.py | .py | import pytest
from nbformat.v4.nbbase import new_code_cell, new_notebook
from jupytext import write
from jupytext.cli import jupytext
@pytest.fixture
def non_black_notebook(python_notebook):
return new_notebook(metadata=python_notebook.metadata, cells=[new_code_cell("1+1")])
@pytest.mark.requires_black
def tes... | 32 | 1,049 |
jupytext | tests/external/round_trip/test_mirror_external.py | .py | import pytest
from jupytext.compare import assert_conversion_same_as_mirror
"""---------------------------------------------------------------------------------
Part I: ipynb -> fmt -> ipynb
---------------------------------------------------------------------------------"""
@pytest.mark.requires_pandoc
def test_... | 54 | 1,708 |
jupytext | tests/data/notebooks/inputs/hydrogen/hydrogen_latex_html_R_magics.py | .py | # %%
1 + 1
# %%
import pandas as pd
pd.Series({'A':5, 'B':2}).plot()
# %%
%matplotlib inline
pd.Series({'A':5, 'B':2}).plot(figsize=(3,2))
# %%
%%html
<p><a href="https://github.com/mwouts/jupytext", style="color: rgb(0,0,255)">Jupytext</a> on GitHub</p>
# %%
%load_ext rpy2.ipython
# %%
%%R -w 400 -h 200
library(g... | 27 | 438 |
jupytext | tests/data/notebooks/inputs/percent/hydrogen.py | .py | # %%
import pandas as pd
# %% Display a data frame
df = pd.DataFrame({'A': [1, 2], 'B': [3, 4]},
index=pd.Index(['x0', 'x1'], name='x'))
df
# %% Pandas plot {"tags": ["parameters"]}
df.plot(kind='bar')
| 11 | 222 |
jupytext | tests/data/notebooks/inputs/marimo/basic_marimo_example.py | .py | import marimo
__generated_with = "0.17.8"
app = marimo.App()
@app.cell(hide_code=True)
def _(mo):
mo.md(r"""
This is a simple marimo notebook
""")
return
@app.cell
def _():
x = 1
return (x,)
@app.cell
def _(x):
y = x+1
y
return
@app.cell
def _():
import marimo as mo
... | 36 | 376 |
jupytext | tests/data/notebooks/inputs/python/light_sample.py | .py | # ---
# jupyter:
# jupytext:
# formats: ipynb,py:light
# ---
# # Sample notebook
a = 1
b = 2
a + b
| 12 | 107 |
jupytext | tests/data/notebooks/inputs/sphinx/plot_notebook.py | .py | # -*- coding: utf-8 -*-
"""
Notebook styled examples
========================
The gallery is capable of transforming Python files into reStructuredText files
with a notebook structure. For this to be used you need to respect some syntax
rules.
It makes a lot of sense to contrast this output rst file with the
:downloa... | 117 | 4,231 |
jupytext | tests/data/notebooks/outputs/ipynb_to_script_vscode_folding_markers/text_outputs_and_images.py | .py | # ---
# jupyter:
# jupytext:
# cell_markers: region,endregion
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# This notebook contains outputs of many different types: text, HTML, plots and errors.
# # Text outputs
#
# Using `print`, `sys.stdout` and `sys.stderr`
i... | 64 | 1,186 |
jupytext | tests/data/notebooks/outputs/ipynb_to_script_vscode_folding_markers/Notebook_with_more_R_magic_111.py | .py | # ---
# jupyter:
# jupytext:
# cell_markers: region,endregion
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# region
# %load_ext rpy2.ipython
import pandas as pd
df = pd.DataFrame(
{
"Letter": ["a", "a", "a", "b", "b", "b", "c", "c", "c"],
"X":... | 29 | 610 |
jupytext | tests/data/notebooks/outputs/ipynb_to_script_vscode_folding_markers/plotly_graphs.py | .py | # ---
# jupyter:
# jupytext:
# cell_markers: region,endregion
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# This notebook contains complex outputs, including plotly javascript graphs.
# # Interactive plots
# We use Plotly's connected mode to make the notebook l... | 27 | 664 |
jupytext | tests/data/notebooks/outputs/ipynb_to_script_vscode_folding_markers/jupyter_again.py | .py | # ---
# jupyter:
# jupytext:
# cell_markers: region,endregion
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
c = '''
title: "Quick test"
output:
ioslides_presentation:
widescreen: true
smaller: true
editor_options:
chunk_output_type console
'''
impor... | 25 | 367 |
jupytext | tests/data/notebooks/outputs/ipynb_to_sphinx/convert_to_py_then_test_with_update83.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# %%time
print('asdf')
"""
Thanks for jupytext!
"""
| 18 | 168 |
jupytext | tests/data/notebooks/outputs/ipynb_to_sphinx/text_outputs_and_images.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
"""
This notebook contains outputs of many different types: text, HTML, plots and errors.
"""
###############################################################################
# # Text outputs
#
# Using `print... | 71 | 1,470 |
jupytext | tests/data/notebooks/outputs/ipynb_to_sphinx/Line_breaks_in_LateX_305.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
"""
This cell uses no particular cell marker
$$
\begin{align}
\dot{x} & = \sigma(y-x)\\
\dot{y} & = \rho x - y - xz \\
\dot{z} & = -\beta z + xy
\end{align}
$$
"""
##########################################... | 43 | 806 |
jupytext | tests/data/notebooks/outputs/ipynb_to_sphinx/plotly_graphs.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
"""
This notebook contains complex outputs, including plotly javascript graphs.
"""
###############################################################################
# # Interactive plots
####################... | 30 | 782 |
jupytext | tests/data/notebooks/outputs/ipynb_to_sphinx/nteract_with_parameter.py | .py | # ---
# jupyter:
# kernel_info:
# name: python3
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
param = 4
""
import pandas as pd
""
df = pd.DataFrame({'A': [1, 2], 'B': [3 + param, 4]},
index=pd.Index(['x0', 'x1'], name='x'))
df
""
# %matplotlib ... | 24 | 347 |
jupytext | tests/data/notebooks/outputs/ipynb_to_sphinx/jupyterlab-slideshow_1441.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3 (ipykernel)
# language: python
# name: python3
# ---
"""
> **Note**
>
> `slide` layer with a `top` of `30%`
"""
| 14 | 184 |
jupytext | tests/data/notebooks/outputs/ipynb_to_sphinx/sample_rise_notebook_66.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
"""
A markdown cell
"""
1+1
###############################################################################
# Markdown cell two
| 17 | 242 |
jupytext | tests/data/notebooks/outputs/ipynb_to_sphinx/jupyter_again.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
c = '''
title: "Quick test"
output:
ioslides_presentation:
widescreen: true
smaller: true
editor_options:
chunk_output_type console
'''
""
import yaml
print(yaml.dump(yaml.load(c)))
""
# ?nex... | 25 | 322 |
jupytext | tests/data/notebooks/outputs/ipynb_to_sphinx/jupyter.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
"""
# Jupyter notebook
This notebook is a simple jupyter notebook. It only has markdown and code cells. And it does not contain consecutive markdown cells. We start with an addition:
"""
a = 1
b = 2
a + b
... | 29 | 576 |
jupytext | tests/data/notebooks/outputs/ipynb_to_percent/text_outputs_and_images.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# %% [markdown]
# This notebook contains outputs of many different types: text, HTML, plots and errors.
# %% [markdown]
# # Text outputs
#
# Using `print`, `sys.stdout` and `sys.stderr`
# %%
import sys
prin... | 74 | 1,250 |
jupytext | tests/data/notebooks/outputs/ipynb_to_percent/Notebook_with_more_R_magic_111.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# %%
# %load_ext rpy2.ipython
import pandas as pd
df = pd.DataFrame(
{
"Letter": ["a", "a", "a", "b", "b", "b", "c", "c", "c"],
"X": [4, 3, 5, 2, 1, 7, 7, 5, 9],
"Y": [0, 4, 3, 6,... | 25 | 527 |
jupytext | tests/data/notebooks/outputs/ipynb_to_percent/jupyter_again.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# %%
c = '''
title: "Quick test"
output:
ioslides_presentation:
widescreen: true
smaller: true
editor_options:
chunk_output_type console
'''
# %%
import yaml
print(yaml.dump(yaml.load(c)))
# ... | 26 | 331 |
jupytext | tests/data/notebooks/outputs/ipynb_to_script_vim_folding_markers/text_outputs_and_images.py | .py | # ---
# jupyter:
# jupytext:
# cell_markers: '{{{,}}}'
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# This notebook contains outputs of many different types: text, HTML, plots and errors.
# # Text outputs
#
# Using `print`, `sys.stdout` and `sys.stderr`
import s... | 64 | 1,179 |
jupytext | tests/data/notebooks/outputs/ipynb_to_script_vim_folding_markers/Notebook_with_more_R_magic_111.py | .py | # ---
# jupyter:
# jupytext:
# cell_markers: '{{{,}}}'
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# {{{
# %load_ext rpy2.ipython
import pandas as pd
df = pd.DataFrame(
{
"Letter": ["a", "a", "a", "b", "b", "b", "c", "c", "c"],
"X": [4, 3, 5,... | 29 | 585 |
jupytext | tests/data/notebooks/outputs/ipynb_to_script_vim_folding_markers/plotly_graphs.py | .py | # ---
# jupyter:
# jupytext:
# cell_markers: '{{{,}}}'
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# This notebook contains complex outputs, including plotly javascript graphs.
# # Interactive plots
# We use Plotly's connected mode to make the notebook lighter ... | 27 | 657 |
jupytext | tests/data/notebooks/outputs/ipynb_to_script_vim_folding_markers/jupyter_again.py | .py | # ---
# jupyter:
# jupytext:
# cell_markers: '{{{,}}}'
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
c = '''
title: "Quick test"
output:
ioslides_presentation:
widescreen: true
smaller: true
editor_options:
chunk_output_type console
'''
import yaml
... | 25 | 360 |
jupytext | tests/data/notebooks/outputs/ipynb_to_hydrogen/text_outputs_and_images.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# %% [markdown]
# This notebook contains outputs of many different types: text, HTML, plots and errors.
# %% [markdown]
# # Text outputs
#
# Using `print`, `sys.stdout` and `sys.stderr`
# %%
import sys
prin... | 74 | 1,248 |
jupytext | tests/data/notebooks/outputs/ipynb_to_hydrogen/Notebook_with_more_R_magic_111.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# %%
%load_ext rpy2.ipython
import pandas as pd
df = pd.DataFrame(
{
"Letter": ["a", "a", "a", "b", "b", "b", "c", "c", "c"],
"X": [4, 3, 5, 2, 1, 7, 7, 5, 9],
"Y": [0, 4, 3, 6, 7... | 26 | 499 |
jupytext | tests/data/notebooks/outputs/ipynb_to_hydrogen/Notebook with html and latex cells.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# %%
%%html
<p><a href="https://github.com/mwouts/jupytext", style="color: rgb(0,0,255)">Jupytext</a> on GitHub</p>
# %%
%%latex
$\frac{\pi}{2}$
# %%
%load_ext rpy2.ipython
# %%
%%R
library(ggplot2)
ggplot... | 29 | 497 |
jupytext | tests/data/notebooks/outputs/ipynb_to_hydrogen/nteract_with_parameter.py | .py | # ---
# jupyter:
# kernel_info:
# name: python3
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# %% inputHidden=false outputHidden=false tags=["parameters"]
param = 4
# %% inputHidden=false outputHidden=false
import pandas as pd
# %% inputHidden=false outputHidden... | 25 | 524 |
jupytext | tests/data/notebooks/outputs/ipynb_to_hydrogen/jupyter_again.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# %%
c = '''
title: "Quick test"
output:
ioslides_presentation:
widescreen: true
smaller: true
editor_options:
chunk_output_type console
'''
# %%
import yaml
print(yaml.dump(yaml.load(c)))
# ... | 26 | 329 |
jupytext | tests/data/notebooks/outputs/ipynb_to_marimo/Notebook with many hash signs.py | .py | import marimo
__generated_with = "0.17.8"
app = marimo.App()
@app.cell(hide_code=True)
def _(mo):
mo.md(r"""
##################################################################
This is a notebook that contains many hash signs.
Hopefully its python representation is not recognized as a Sphinx Gallery s... | 50 | 1,136 |
jupytext | tests/data/notebooks/outputs/ipynb_to_marimo/text_outputs_and_images.py | .py | import marimo
__generated_with = "0.17.8"
app = marimo.App()
@app.cell(hide_code=True)
def _(mo):
mo.md(r"""
This notebook contains outputs of many different types: text, HTML, plots and errors.
""")
return
@app.cell(hide_code=True)
def _(mo):
mo.md(r"""
# Text outputs
Using `print`, `... | 127 | 1,987 |
jupytext | tests/data/notebooks/outputs/ipynb_to_marimo/cat_variable.py | .py | import marimo
__generated_with = "0.17.8"
app = marimo.App()
@app.cell
def _():
cat = 42
return
if __name__ == "__main__":
app.run()
| 15 | 150 |
jupytext | tests/data/notebooks/outputs/ipynb_to_marimo/Notebook with function and cell metadata 164.py | .py | import marimo
__generated_with = "0.17.8"
app = marimo.App()
@app.cell
def _():
1 + 1
return
@app.cell(hide_code=True)
def _(mo):
mo.md(r"""
A markdown cell
And below, the cell for function f has non trivial cell metadata. And the next cell as well.
""")
return
@app.function
def f(x):... | 55 | 610 |
jupytext | tests/data/notebooks/outputs/ipynb_to_marimo/Line_breaks_in_LateX_305.py | .py | import marimo
__generated_with = "0.17.8"
app = marimo.App()
@app.cell(hide_code=True)
def _(mo):
mo.md(r"""
This cell uses no particular cell marker
$$
\begin{align}
\dot{x} & = \sigma(y-x)\\
\dot{y} & = \rho x - y - xz \\
\dot{z} & = -\beta z + xy
\end{align}
$$
""")
re... | 63 | 1,064 |
jupytext | tests/data/notebooks/outputs/ipynb_to_marimo/frozen_cell.py | .py | import marimo
__generated_with = "0.17.8"
app = marimo.App()
@app.cell
def _():
# This is an unfrozen cell. Works as usual.
print("I'm a regular cell so I run and print!")
return
@app.cell
def _():
# This is an frozen cell
print("I'm frozen so Im not executed :(")
return
if __name__ == "_... | 23 | 344 |
jupytext | tests/data/notebooks/outputs/ipynb_to_marimo/plotly_graphs.py | .py | import marimo
__generated_with = "0.17.8"
app = marimo.App()
@app.cell(hide_code=True)
def _(mo):
mo.md(r"""
This notebook contains complex outputs, including plotly javascript graphs.
""")
return
@app.cell(hide_code=True)
def _(mo):
mo.md(r"""
# Interactive plots
""")
return
@app... | 58 | 992 |
jupytext | tests/data/notebooks/outputs/ipynb_to_marimo/notebook_with_complex_metadata.py | .py | import marimo
__generated_with = "0.17.8"
app = marimo.App()
@app.cell
def _():
return
if __name__ == "__main__":
app.run()
| 14 | 137 |
jupytext | tests/data/notebooks/outputs/ipynb_to_marimo/sample_rise_notebook_66.py | .py | import marimo
__generated_with = "0.17.8"
app = marimo.App()
@app.cell(hide_code=True)
def _(mo):
mo.md(r"""
A markdown cell
""")
return
@app.cell
def _():
1+1
return
@app.cell(hide_code=True)
def _(mo):
mo.md(r"""
Markdown cell two
""")
return
@app.cell
def _():
imp... | 37 | 397 |
jupytext | tests/data/notebooks/outputs/ipynb_to_marimo/jupyter.py | .py | import marimo
__generated_with = "0.17.8"
app = marimo.App()
@app.cell(hide_code=True)
def _(mo):
mo.md(r"""
# Jupyter notebook
This notebook is a simple jupyter notebook. It only has markdown and code cells. And it does not contain consecutive markdown cells. We start with an addition:
""")
ret... | 61 | 818 |
jupytext | tests/data/notebooks/outputs/ipynb_to_script/text_outputs_and_images.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# This notebook contains outputs of many different types: text, HTML, plots and errors.
# # Text outputs
#
# Using `print`, `sys.stdout` and `sys.stderr`
import sys
print('using print')
sys.stdout.write('us... | 62 | 1,135 |
jupytext | tests/data/notebooks/outputs/ipynb_to_script/Notebook_with_more_R_magic_111.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# +
# %load_ext rpy2.ipython
import pandas as pd
df = pd.DataFrame(
{
"Letter": ["a", "a", "a", "b", "b", "b", "c", "c", "c"],
"X": [4, 3, 5, 2, 1, 7, 7, 5, 9],
"Y": [0, 4, 3, 6, ... | 25 | 525 |
jupytext | tests/data/notebooks/outputs/ipynb_to_script/plotly_graphs.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# This notebook contains complex outputs, including plotly javascript graphs.
# # Interactive plots
# We use Plotly's connected mode to make the notebook lighter - when connected, the notebook downloads the... | 25 | 613 |
jupytext | tests/data/notebooks/outputs/ipynb_to_script/jupyter_again.py | .py | # ---
# jupyter:
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
c = '''
title: "Quick test"
output:
ioslides_presentation:
widescreen: true
smaller: true
editor_options:
chunk_output_type console
'''
import yaml
print(yaml.dump(yaml.load(c)))
# ?next
| 23 | 316 |
jupytext | src/jupytext_config/labconfig.py | .py | """
helper to inspect / initialize jupyterlab labconfig settings
that are required to open jupytext notebooks in jupyterlab by default
when these settings are not present, a double click on a jupytext
notebook will cause jupyterlab to open it in an editor, i.e. as a text file
"""
import json
import logging
from pathli... | 83 | 2,473 |
jupytext | src/jupytext_config/__main__.py | .py | """Main for Jupytext_config
Call with (e.g.)::
python -m jupytext_config list-default-viewer
"""
import sys
from .jupytext_config import main
if __name__ == "__main__":
sys.exit(main())
| 14 | 199 |
jupytext | src/jupytext_config/jupytext_config.py | .py | """
the code for
jupytext-config set-default-viewer
and related subcommands
"""
import sys
from argparse import ArgumentParser
from pathlib import Path
import jupyter_core.paths as jupyter_core_paths
from .labconfig import LabConfig
class SubCommand:
"""
a subcommand for jupytext-config
"""
def __... | 97 | 2,660 |
jupytext | src/jupytext/header.py | .py | """Parse header of text notebooks"""
import logging
import re
import nbformat
import yaml
from nbformat.v4.nbbase import new_raw_cell
from yaml.representer import SafeRepresenter
from .languages import (
_SCRIPT_EXTENSIONS,
comment_lines,
default_language_from_metadata_and_ext,
)
from .metadata_filter im... | 342 | 12,122 |
jupytext | src/jupytext/compare.py | .py | """Compare two Jupyter notebooks"""
import difflib
import json
import os
import re
from jupytext.marimo import marimo_version
from jupytext.paired_paths import full_path
from .cell_metadata import _IGNORE_CELL_METADATA
from .combine import combine_inputs_with_outputs
from .formats import check_auto_ext, long_form_on... | 412 | 15,096 |
jupytext | src/jupytext/kernels.py | .py | """Find kernel specifications for a given language"""
import os
import sys
from .languages import same_language
from .reraise import reraise
try:
# I prefer not to take a dependency on jupyter_client
from jupyter_client.kernelspec import find_kernel_specs, get_kernel_spec
except ImportError as err:
find_... | 57 | 2,158 |
jupytext | src/jupytext/formats.py | .py | """
In this file the various text notebooks formats are defined. Please contribute
new formats here!
"""
import os
import re
import warnings
import nbformat
import yaml
from .cell_reader import (
DoublePercentScriptCellReader,
HydrogenCellReader,
LightScriptCellReader,
MarkdownCellReader,
RMarkdo... | 829 | 30,958 |
jupytext | src/jupytext/combine.py | .py | """Combine source and outputs from two notebooks"""
import re
from copy import copy
from nbformat import NotebookNode
from .cell_metadata import _IGNORE_CELL_METADATA
from .formats import long_form_one_format
from .header import _DEFAULT_NOTEBOOK_METADATA
from .metadata_filter import restore_filtered_metadata
_BLAN... | 178 | 6,447 |
jupytext | src/jupytext/cell_reader.py | .py | """Read notebook cells from their text representation"""
import re
from collections import defaultdict
from copy import copy
from itertools import count
from nbformat.v4.nbbase import new_code_cell, new_markdown_cell, new_raw_cell
from .doxygen import doxygen_to_markdown
from .languages import _SCRIPT_EXTENSIONS
# ... | 956 | 38,995 |
jupytext | src/jupytext/cell_to_text.py | .py | """Export notebook cells as text"""
import re
import warnings
from copy import copy
from .cell_metadata import (
_IGNORE_CELL_METADATA,
is_active,
metadata_to_double_percent_options,
metadata_to_rmd_options,
metadata_to_text,
)
from .cell_reader import LightScriptCellReader, MarkdownCellReader, RM... | 543 | 21,348 |
jupytext | src/jupytext/languages.py | .py | """Determine notebook or cell language"""
import re
# Jupyter magic commands that are also languages
_JUPYTER_LANGUAGES = [
"R",
"bash",
"sh",
"python",
"python2",
"python3",
"coconut",
"javascript",
"js",
"perl",
"html",
"latex",
"markdown",
"pypy",
"ruby",... | 228 | 8,149 |
jupytext | src/jupytext/pep8.py | .py | """Determine how many blank lines should be inserted between two cells"""
from .stringparser import StringParser
def next_instruction_is_function_or_class(lines):
"""Is the first non-empty, non-commented line of the cell either a function or a class?"""
parser = StringParser("python")
for i, line in enum... | 95 | 2,899 |
jupytext | src/jupytext/doxygen.py | .py | """Convert Markdown equations to doxygen equations and back
See https://github.com/mwouts/jupytext/issues/517"""
import re
def markdown_to_doxygen(string):
"""Markdown to Doxygen equations"""
long_equations = re.sub(r"(?<!\\)\$\$(.*?)(?<!\\)\$\$", r"\\f[\g<1>\\f]", string, flags=re.DOTALL)
inline_equatio... | 19 | 661 |
jupytext | src/jupytext/__main__.py | .py | """Main for Jupytext
Call with (e.g.)::
python -m jupytext my_notebook.ipynb --to Rmd
"""
import sys
from .cli import jupytext
if __name__ == "__main__":
sys.exit(jupytext())
| 14 | 188 |
jupytext | src/jupytext/__init__.py | .py | """Read and write Jupyter notebooks as text files"""
from .formats import NOTEBOOK_EXTENSIONS, get_format_implementation, guess_format
from .jupytext import read, reads, write, writes
from .reraise import reraise
from .version import __version__
try:
from .sync_contentsmanager import build_sync_jupytext_contents_... | 42 | 1,223 |
jupytext | src/jupytext/quarto.py | .py | """Jupyter notebook to Quarto Markdown and back, using 'quarto convert'"""
import json
import os
import shutil
import subprocess
import sys
import tempfile
# Copy nbformat reads and writes to avoid them being patched in the contents manager!!
from nbformat import reads as ipynb_reads
from nbformat import writes as ip... | 164 | 5,995 |
jupytext | src/jupytext/version.py | .py | """Jupytext's version number"""
# Must match [N!]N(.N)*[{a|b|rc}N][.postN][.devN], cf. PEP 440
__version__ = "1.19.5"
| 5 | 119 |
jupytext | src/jupytext/metadata_filter.py | .py | """Notebook and cell metadata filtering"""
from copy import copy
from .cell_metadata import _JUPYTEXT_CELL_METADATA, is_valid_metadata_key
_DEFAULT_NOTEBOOK_METADATA = ",".join(
[
# Preserve Jupytext section
"jupytext",
# Preserve kernel specs
"kernelspec",
# Kernel_info f... | 257 | 9,534 |
jupytext | src/jupytext/marimo.py | .py | """Jupyter notebook to Marimo py format and back, using Marimo"""
import os
from packaging.version import parse
import tempfile
import subprocess
import nbformat
MARIMO_MIN_VERSION = "0.16.3"
class MarimoError(OSError):
"""An error related to Marimo"""
def is_marimo_available(min_version=MARIMO_MIN_VERSION, m... | 156 | 5,344 |
jupytext | src/jupytext/stringparser.py | .py | """A simple file parser that can tell whether the first character of a line
is quoted or not"""
from .languages import _COMMENT
class StringParser:
"""A simple file parser that can tell whether the first character of a line
is quoted or not"""
single = None
triple = None
triple_start = None
... | 86 | 2,427 |
jupytext | src/jupytext/pandoc.py | .py | """Jupyter notebook to Markdown and back, using Pandoc"""
import os
import subprocess
import tempfile
# Copy nbformat reads and writes to avoid them being patched in the contents manager!!
from nbformat import reads as ipynb_reads
from nbformat import writes as ipynb_writes
from packaging.version import parse
class... | 119 | 3,673 |
jupytext | src/jupytext/myst.py | .py | """
This module contains round-trip conversion between
myst formatted text documents and notebooks.
"""
import json
import re
import warnings
from textwrap import dedent
import nbformat as nbf
import yaml
from yaml.representer import SafeRepresenter
from .cell_to_text import three_backticks_or_more
from .metadata_fi... | 423 | 14,922 |
jupytext | src/jupytext/pairs.py | .py | """Functions to read or write paired notebooks"""
from collections import namedtuple
from .formats import long_form_multiple_formats, long_form_one_format
from .paired_paths import paired_paths
NotebookFile = namedtuple("notebook_file", "path fmt timestamp")
class PairedFilesDiffer(ValueError):
"""An error whe... | 56 | 2,226 |
jupytext | src/jupytext/cli.py | .py | """`jupytext` as a command line tool"""
import argparse
import glob
import json
import os
import re
import shlex
import subprocess
import sys
import warnings
from copy import copy
from tempfile import NamedTemporaryFile
from typing import Optional
from nbformat.sign import NotebookNotary
from .combine import combine... | 1,397 | 51,518 |
jupytext | src/jupytext/async_contentsmanager.py | .py | """
This module exposes the AsyncTextFileContentsManager that allows to open
text files as notebooks
"""
import inspect
import itertools
import os
try:
import tomllib
except ImportError:
import tomli as tomllib
from collections import namedtuple
from datetime import timedelta
import nbformat
from tornado.we... | 688 | 29,510 |
jupytext | src/jupytext/config.py | .py | """Find and read Jupytext configuration files"""
import json
import os
from pathlib import Path
try:
import tomllib
except ImportError:
import tomli as tomllib
import warnings
import yaml
from traitlets import Bool, Dict, Enum, Float, List, Unicode, Union
from traitlets.config import Configurable
from trait... | 528 | 20,567 |
jupytext | src/jupytext/cell_metadata.py | .py | """
Convert between text notebook metadata and jupyter cell metadata.
Standard cell metadata are documented here:
See also https://ipython.org/ipython-doc/3/notebook/nbformat.html#cell-metadata
"""
import ast
import re
from json import dumps, loads
try:
from json import JSONDecodeError
except ImportError:
JS... | 490 | 16,823 |
jupytext | src/jupytext/paired_paths.py | .py | """List all the paths associated to a given notebook"""
import os
from .config import find_jupytext_configuration_file
from .formats import (
NOTEBOOK_EXTENSIONS,
long_form_multiple_formats,
long_form_one_format,
short_form_multiple_formats,
short_form_one_format,
)
class InconsistentPath(ValueE... | 333 | 11,566 |
jupytext | src/jupytext/async_pairs.py | .py | import jupytext
from .combine import combine_inputs_with_outputs
from .compare import compare
from .formats import check_file_version, long_form_multiple_formats
from .paired_paths import find_base_path_and_format, full_path
from .pairs import PairedFilesDiffer
async def read_pair(inputs, outputs, read_one_file, mus... | 73 | 2,574 |
jupytext | src/jupytext/jupytext.py | .py | """Read and write Jupyter notebooks as text files"""
import logging
import os
import sys
import warnings
from copy import copy, deepcopy
import nbformat
from nbformat.v4.nbbase import NotebookNode, new_code_cell, new_notebook
from nbformat.v4.rwbase import NotebookReader, NotebookWriter
from .cell_metadata import _I... | 592 | 23,870 |
jupytext | src/jupytext/reraise.py | .py | """Raise the given error at evaluation time"""
def reraise(error):
"""Return a function that raises the given error when evaluated"""
def local_function(*args, **kwargs):
raise error
return local_function
| 11 | 229 |
jupytext | src/jupytext/magics.py | .py | """Escape Jupyter magics when converting to other formats"""
import re
from .languages import _COMMENT, _SCRIPT_EXTENSIONS, usual_language_name
from .stringparser import StringParser
def get_comment(ext):
return re.escape(_SCRIPT_EXTENSIONS[ext]["comment"])
# A magic expression is a line or cell or metakernel... | 188 | 7,346 |
voila | setup.py | .py | # setup.py shim for use with applications that require it.
__import__("setuptools").setup()
| 3 | 92 |
voila | hatch_build.py | .py | import os
import sys
from urllib.request import urlopen
from hatchling.builders.hooks.plugin.interface import BuildHookInterface
JUPYTERLAB_APPUTILS_VERSION = "3.2.8"
JUPYTERLAB_THEME_LIGHT_VERSION = "3.2.8"
CSS_FILES = [
(
f"https://unpkg.com/@jupyterlab/apputils@{JUPYTERLAB_APPUTILS_VERSION}/style/mate... | 50 | 1,667 |
voila | voila/configuration.py | .py | #############################################################################
# Copyright (c) 2018, QuantStack #
# Copyright (c) 2018, Voilà Contributors #
# #
# Distri... | 278 | 9,615 |
voila | voila/app.py | .py | #############################################################################
# Copyright (c) 2018, Voilà Contributors #
# Copyright (c) 2018, QuantStack #
# #
# Distri... | 1,002 | 36,242 |
voila | voila/execute.py | .py | #############################################################################
# Copyright (c) 2018, Voilà Contributors #
# Copyright (c) 2018, QuantStack #
# #
# Distri... | 155 | 5,278 |
voila | voila/utils.py | .py | #############################################################################
# Copyright (c) 2018, Voilà Contributors #
# Copyright (c) 2018, QuantStack #
# #
# Distri... | 377 | 12,860 |
voila | voila/request_info_handler.py | .py | import logging
from typing import Dict
from tornado.websocket import WebSocketHandler
class RequestInfoSocketHandler(WebSocketHandler):
"""A websocket handler used to provide the request info
associated with kernel ids in preheat kernel mode.
Class variables
---------------
- _waiters : A dictio... | 64 | 2,215 |
voila | voila/_version.py | .py | #############################################################################
# Copyright (c) 2018, Voilà Contributors #
# Copyright (c) 2018, QuantStack #
# #
# Distri... | 48 | 1,491 |
voila | voila/__init__.py | .py | #############################################################################
# Copyright (c) 2018, Voilà Contributors #
# Copyright (c) 2018, QuantStack #
# #
# Distri... | 44 | 1,618 |
voila | voila/voila_kernel_manager.py | .py | #############################################################################
# Copyright (c) 2021, Voilà Contributors #
# Copyright (c) 2021, QuantStack #
# #
# Distri... | 462 | 19,132 |
voila | voila/shutdown_kernel_handler.py | .py | import tornado
from jupyter_server.base.handlers import APIHandler
from jupyter_core.utils import ensure_async
class VoilaShutdownKernelHandler(APIHandler):
"""Handler to shut down kernel on page's `beforeunload` event."""
@tornado.web.authenticated
async def post(self, kernel_id):
await ensure_a... | 14 | 424 |
voila | voila/treehandler.py | .py | #############################################################################
# Copyright (c) 2018, Voilà Contributors #
# Copyright (c) 2018, QuantStack #
# #
# Distri... | 64 | 2,644 |
voila | voila/paths.py | .py | #############################################################################
# Copyright (c) 2018, Voilà Contributors #
# Copyright (c) 2018, QuantStack #
# #
# Distri... | 167 | 6,238 |
voila | voila/handler.py | .py | #############################################################################
# Copyright (c) 2018, Voilà Contributors #
# Copyright (c) 2018, QuantStack #
# #
# Distri... | 311 | 12,571 |
voila | voila/static_file_handler.py | .py | #############################################################################
# Copyright (c) 2018, Voilà Contributors #
# Copyright (c) 2018, QuantStack #
# #
# Distri... | 114 | 4,642 |
voila | voila/notebook_renderer.py | .py | #############################################################################
# Copyright (c) 2021, Voilà Contributors #
# Copyright (c) 2021, QuantStack #
# #
# Distri... | 424 | 18,201 |
voila | voila/voila_identity_provider.py | .py | from typing import Any, Optional
from jupyter_server.auth.identity import IdentityProvider
from jupyter_server.auth.login import LoginFormHandler
class VoilaLoginHandler(LoginFormHandler):
def static_url(
self, path: str, include_host: Optional[bool] = None, **kwargs: Any
) -> str:
settings = ... | 22 | 663 |
voila | voila/server_extension.py | .py | #############################################################################
# Copyright (c) 2018, Voilà Contributors #
# Copyright (c) 2018, QuantStack #
# #
# Distri... | 217 | 7,034 |
voila | voila/exporter.py | .py | #############################################################################
# Copyright (c) 2018, Voilà Contributors #
# Copyright (c) 2018, QuantStack #
# #
# Distri... | 199 | 7,470 |
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