Download src/evaluate.py from doriab/CareMedEval: direct link, hf CLI and curl.
- Browser
- Download file 5.04 kB
-
https://huggingface.co/datasets/doriab/CareMedEval/resolve/main/src/evaluate.py
- Command line
-
hf download hf://datasets/doriab/CareMedEval/src/evaluate.py
-
curl -L -o evaluate.py https://huggingface.co/datasets/doriab/CareMedEval/resolve/main/src/evaluate.py
5.04 kB
| import json | |
| import re | |
| from collections import defaultdict | |
| from .data_utils import load_article_text | |
| from .prompt_utils import build_prompt | |
| from .metrics import exact_match,f1_score,hamming_score,lca_score,clean_model_answer | |
| #Model evaluation | |
| def evaluate(llm,tokenizer,sampling_params,questions,article_path,with_think=False): | |
| emr_total=0 | |
| f1_total=0 | |
| lca_total=0 | |
| hamming_total=0 | |
| count=0 | |
| invalid_count=0 | |
| extracted_from_invalid=0 | |
| label_scores=defaultdict(lambda: {"emr":[],"f1":[],"lca":[],"hamming":[]}) | |
| results_list=[] | |
| for q in questions: | |
| article=load_article_text(q["id_article"],article_path) | |
| if not article: | |
| continue | |
| prompt=build_prompt(article,q,tokenizer) | |
| if with_think: | |
| prompt=prompt | |
| else: | |
| prompt="/no_think\n"+prompt | |
| outputs=llm.generate(prompts=[prompt],sampling_params=sampling_params) | |
| model_raw_output=outputs[0].outputs[0].text.strip() | |
| if with_think: | |
| justification_match=re.search(r"<think>\s*(.*?)\s*</think>",model_raw_output, re.DOTALL | re.IGNORECASE) | |
| justification_model=justification_match.group(1).strip() if justification_match else "" | |
| else: | |
| justification_model="" | |
| print(f"\nQuestion {count+1}/{len(questions)} traitée",flush=True) | |
| print(f"\nRaw model output: {model_raw_output}",flush=True) | |
| is_valid_format=bool(re.match(r"^([a-eA-E](?:[,\s]+[a-eA-E])*)$",model_raw_output.strip())) | |
| if not is_valid_format: | |
| invalid_count+=1 | |
| cleaned=clean_model_answer(model_raw_output) | |
| if cleaned: | |
| extracted_from_invalid+=1 | |
| model_answer=clean_model_answer(model_raw_output) | |
| model_answer=model_answer.lower().strip().replace(",","").replace(" ","") | |
| gold_answer="".join(q["correct_answers"]).lower() | |
| emr=exact_match(model_answer,gold_answer) | |
| f1=f1_score(model_answer,gold_answer) | |
| hamming=hamming_score(model_answer,gold_answer) | |
| lca=lca_score(model_answer,gold_answer) | |
| emr_total+=int(emr) | |
| f1_total+=f1 | |
| hamming_total+=hamming | |
| lca_total+=lca | |
| count+=1 | |
| for label in q["labels"]: | |
| label=str(label) | |
| label_scores[label]["emr"].append(int(emr)) | |
| label_scores[label]["f1"].append(f1) | |
| label_scores[label]["lca"].append(lca) | |
| label_scores[label]["hamming"].append(hamming) | |
| print(f"\nQ: {q['question']}\nPredicted: {model_answer} | Gold: {gold_answer} | EMR: {emr} | F1: {f1:.2f} | Hamming: {hamming:.2f} | LCA-score: {lca:.2f}", flush=True) | |
| #Add results per question | |
| results_list.append({ | |
| "question_id": q.get("id"), | |
| "article_id": q.get("id_article"), | |
| "article_date": q.get("article_date"), | |
| "exam_date": q.get("date_exam"), | |
| "question": q["question"], | |
| "raw_output": model_raw_output, | |
| "predicted_answers": list(model_answer.lower()), | |
| "gold_answers": q["correct_answers"], | |
| "justification_model": justification_model, | |
| "justification_human": q.get("justification"), | |
| "emr": round(emr,2), | |
| "f1": round(f1,2), | |
| "hamming": round(hamming,2), | |
| "lca": lca | |
| }) | |
| #Results summary | |
| summary={ | |
| "summary_global":{ | |
| "total_evaluated": count, | |
| "emr_avg": round(emr_total/count,2) if count>0 else 0, | |
| "f1_avg": round(f1_total/count,2) if count>0 else 0, | |
| "hamming_avg": round(hamming_total/count,2) if count>0 else 0, | |
| "lca_avg": round(lca_total/count,2) if count>0 else 0, | |
| "malformatted_percentage": round((invalid_count/count)*100,2) if count>0 else 0, | |
| "extraction_rate": round((extracted_from_invalid/invalid_count*100),2) if invalid_count>0 else 0 | |
| }, | |
| "summary_by_label": {} | |
| } | |
| for label in sorted(label_scores.keys()): | |
| label_emr_avg=sum(label_scores[label]["emr"])/len(label_scores[label]["emr"]) | |
| label_f1_avg=sum(label_scores[label]["f1"])/len(label_scores[label]["f1"]) | |
| label_lca_avg=sum(label_scores[label]["lca"])/len(label_scores[label]["lca"]) | |
| label_hamming_avg=sum(label_scores[label]["hamming"])/len(label_scores[label]["hamming"]) | |
| summary["summary_by_label"][label] = { | |
| "emr_avg": round(label_emr_avg,2), | |
| "f1_avg": round(label_f1_avg,2), | |
| "hamming_avg": round(label_hamming_avg,2), | |
| "lca_avg": round(label_lca_avg,2) | |
| } | |
| #Save results to a JSON file | |
| with open("evaluation_results.json","w",encoding="utf-8") as f: | |
| json.dump({ | |
| "results": results_list, | |
| "summary": summary | |
| }, f,indent=2,ensure_ascii=False) | |
| print("\n=== Results saved in 'evaluation_results.json' ===",flush=True) |