feel / preprocess.py
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Add force preprocessing pipeline
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#!/usr/bin/env python3
"""Reprocess P1-P21 force CSVs using participant-specific ignore rules."""
from __future__ import annotations
import argparse
import csv
import importlib.util
import shutil
from pathlib import Path
import pandas as pd
DEFAULT_PROCESSOR = Path("/media/lab/Seagate Portable Drive/ECCV_dataset/zero_correct.py")
def load_processor(path: Path):
spec = importlib.util.spec_from_file_location("feel_zero_correct", path)
if spec is None or spec.loader is None:
raise RuntimeError(f"Cannot import processor: {path}")
module = importlib.util.module_from_spec(spec)
spec.loader.exec_module(module)
return module
def enabled(value: str):
return value.strip().lower() in {"1", "true", "yes", "y"}
def parse_ignore_before(value: str, side: str = "right"):
"""Parse a global cutoff or sensor-specific cutoffs such as ``4r@2050``."""
value = value.strip().lower()
if not value:
return None, {}
if value.isdigit():
return int(value), {}
rules = {}
for token in value.split(","):
token = token.strip()
if token.count("@") != 1:
raise ValueError(
f"invalid ignore_before rule {token!r}; expected SENSORr@ROW, e.g. 4r@2050"
)
base, end_text = token.split("@")
if len(base) < 2 or base[-1] not in {"l", "r"} or not base[:-1].isdigit():
raise ValueError(
f"invalid ignore_before sensor {base!r}; expected e.g. 4r"
)
if not end_text.isdigit():
raise ValueError(
f"invalid ignore_before row {end_text!r}; expected a non-negative integer"
)
hand = base[-1]
if (hand == "l" and side == "left") or (hand == "r" and side == "right"):
rules.setdefault(int(base[:-1]), []).append((0, int(end_text)))
return None, rules
def raw_input_from_existing(path: Path):
df = pd.read_csv(path)
sensor_cols = sorted(
(column for column in df.columns if column.startswith("sensor") and column[6:].isdigit()),
key=lambda column: int(column[6:]),
)
if not sensor_cols:
raise RuntimeError(f"No sensorN columns in {path}")
for column in sensor_cols:
raw_column = f"raw_{column}"
if raw_column not in df.columns:
raise RuntimeError(f"{path} lacks {raw_column}; cannot reconstruct original sensor data")
df[column] = df[raw_column]
# The correction routine recreates these columns from reconstructed input.
drop = [f"raw_{column}" for column in sensor_cols] + ["raw_force", "force"]
return df.drop(columns=[column for column in drop if column in df.columns])
def main():
parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument("--config", type=Path, default=Path(__file__).with_name("non_named_ignore_rules.csv"))
parser.add_argument("--feel-root", type=Path, default=Path(__file__).resolve().parent)
parser.add_argument("--processor", type=Path, default=DEFAULT_PROCESSOR)
parser.add_argument("--apply", action="store_true", help="Write results; otherwise only validate and report")
parser.add_argument("--only", nargs="*", help="Optional participant subset, for example --only P1 P4")
args = parser.parse_args()
processor = load_processor(args.processor)
selected = set(args.only or [])
with args.config.open(newline="") as handle:
rules = list(csv.DictReader(handle))
failures = []
for row in rules:
participant = row["participant"].strip()
if not enabled(row.get("enabled", "true")) or (selected and participant not in selected):
continue
destination = args.feel_root / participant / "force_aligned_.csv"
ignore = (row.get("ignore") or "").strip()
before_text = (row.get("ignore_before") or "").strip()
try:
raw_df = raw_input_from_existing(destination)
parsed = processor.parse_ignore(ignore, "right")
ignore_before, before_rules = parse_ignore_before(before_text, "right")
for sensor, spans in before_rules.items():
parsed.setdefault(sensor, []).extend(spans)
if not args.apply:
if ignore_before is not None and not 0 <= ignore_before <= len(raw_df):
raise ValueError(f"ignore_before must be between 0 and {len(raw_df)}")
for sensor, spans in before_rules.items():
for _, end in spans:
if not 0 <= end <= len(raw_df):
raise ValueError(
f"ignore_before cutoff for sensor {sensor} must be between "
f"0 and {len(raw_df)}"
)
print(f"VALID {participant}: rows={len(raw_df)}, ignore={ignore or '(none)'}, "
f"ignore_before={before_text or '(none)'}")
continue
corrected = processor.apply_piecewise_zero_correction(
raw_df, parsed, ignore_before=ignore_before
)
if len(corrected) != len(raw_df):
raise RuntimeError("correction changed row count")
backup = destination.with_name("force_aligned_.before_reprocess.csv")
if not backup.exists():
shutil.copy2(destination, backup)
temporary = destination.with_suffix(".csv.tmp")
corrected.to_csv(temporary, index=False)
temporary.replace(destination)
print(f"WROTE {participant}: {len(corrected)} rows, ignore={ignore or '(none)'}, "
f"ignore_before={before_text or '(none)'}")
except Exception as error:
failures.append((participant, str(error)))
print(f"ERROR {participant}: {error}")
if failures:
raise SystemExit(f"Failed participants: {', '.join(name for name, _ in failures)}")
if __name__ == "__main__":
main()